BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15075.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493381 jgi|Araly1|493381|fgenesh2_kg.7__2814__AT4G15075.1 726 0.0
> Ahg493381 jgi|Araly1|493381|fgenesh2_kg.7__2814__AT4G15075.1
Length=542
Score = 726 bits (393), Expect = 0.0
Identities = 500/548 (91%), Gaps = 21/548 (4%)
Strand=Plus/Plus
Query 10 GATAGCTACTCCTACGATTTTAAAGATATGCCTAAGTTAGGGGAGGCGGATATCGAAACG 69
|||||||||||||| |||||| |||||||| ||||||||| || ||||||||||||||||
Sbjct 1 GATAGCTACTCCTATGATTTTCAAGATATGTCTAAGTTAGAGGTGGCGGATATCGAAACG 60
Query 70 ACATACCCCGATATCAACAAGTTTGTAACATCAATCACATCTGTCAACCGGCTTTCATTA 129
|||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 61 ACATTCCCTGATATCAACAAGTTTGTTACATCAATCACATCTGTCAAGCGGCTTTCATTA 120
Query 130 TGTGTAAGAGTCAACTCTGCGGAAGAGCTTGAGAATCTGAAGCTTTGTCCATGTGATGCA 189
|| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCGTAAGAGTCAA--C-GCGGAAGAGCTTGAGAATCTGAAGCTTTGTCCATGTGATGCA 177
Query 190 AATTGGTCAAAGTTACTTGTCCGTTTTCTCGAAAATTCGCATAATTTACTAGAGCTAGAG 249
||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||
Sbjct 178 AATTGGTCAAAGTTACTTGTCCGGTTTCTCGAAAATTCTCCTAATTTACGAGAGCTAGAG 237
Query 250 ATCGATCTGAACGATGATCATATAGATAGTTGTGTGGTCGATCCACTGGTTTGCTTGGAG 309
||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 238 ATCGATCTGAATGATGATCATAAAGATAGTTGTTTGG---ATCCACTGGTTTGCTTGGAG 294
Query 310 AATCAGTTGAACTATGTTCCTGAATGTTTGAGGTCGAATCTCGAAACT---AAGTGGACA 366
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 295 AATCAATTGAACTATGTTCCTGAATGTTTGAGGTCGAGTCTCGAAACTTTCAAGTGGACA 354
Query 367 GGGATGCATGGATCACAGAAAGAGATAGATATGCTTAAATATATTTTGAGAAATGCTTGT 426
|| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 355 GGTATACATGGATCACAGAAAGAGATAGAGCTGGTTAAATATATTTTGAGAAATGCTTGT 414
Query 427 TGCTTAAAGACTGCGACAATCTTGTTTAAGTCTACT-C--CAGATACAGAGGATAAACAT 483
||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||| |
Sbjct 415 TGCTTAAAGACTGCGACAATCTTGTTTCAGTCTACTACTACAGAGACAGAGGATAAACGT 474
Query 484 AAGACGATGATCCAGGAGTTGTTACTTTCTTC---AA---CAACA---TGCCAACTCGTA 534
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 475 AAGACGATGATCCAGGAGTTGTTACTTTCTTCTCGAAGTTCAACAACATGCCAACTCGTA 534
Query 535 TTTGATTG 542
||||||||
Sbjct 535 TTTGATTG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5