BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15080.1
Length=2893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946828 jgi|Araly1|946828|scaffold_703057.1 3408 0.0
> Ahg946828 jgi|Araly1|946828|scaffold_703057.1
Length=2196
Score = 3408 bits (1845), Expect = 0.0
Identities = 2088/2205 (95%), Gaps = 17/2205 (1%)
Strand=Plus/Plus
Query 331 AAGCTTTGGGAGGAAGCAAAAATGGTGAGGAAACATGGTTGGCAACTTCCTGCTCACAAA 390
||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2 AAGCTTTTGGTGGAAGCAAAAATGGTTAGGAAACATGGTTGGCAACTTCCTGCTCACAAA 61
Query 391 TTTCAGGTGGTTGCGATTACGGTGTTCTGCTTATTGAGTGTAGCATACTATGCGTTTTTC 450
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 62 TTTCAGGTGGTTGCGATTACGGTGTTTTGCTTATTGAGTGTTGCATACTATGCGTTTTTT 121
Query 451 GCTCCTTTTGTTGGAGGACGCATCTGGGAGTATATTCTTCTCGGTGTTTACTCTCCTGTG 510
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 122 GCTCCTTTTGTTGGAGGACGCATTTGGGGGTATATTCTTCTCGGTGTTTACTCTCCTGTG 181
Query 511 GCTCTTATTGTTTTCGTTCTTTATGTTCGTTGTACTGCAATCAATCCTGCTGATCCAGGA 570
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 182 GCTCTTATTGTTTTCGTTCTTTATGTTCGGTGTACTGCAATCAATCCTGCGGATCCAGGA 241
Query 571 ATCATGTCGAAATTCGAAAGAGGTGCGAGTAGAGGTGGTGACTTACCTACTGCCAAAGAT 630
||||||||||||||||| || ||||||| ||||||| ||| |||||| |||||||||||
Sbjct 242 ATCATGTCGAAATTCGATAGGGGTGCGAACAGAGGTGATGATTTACCTGCTGCCAAAGAT 301
Query 631 ATCTCGAGAAAATTTGATGAAACGGGCAGCCACCTGCAGTCTTCCCCTTCGGTTGCTTCC 690
||||| |||||||| |||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 302 ATCTCAAGAAAATTCGATGAAACAGGCAGTCAGCTGCAGTCTTCTCCTTCGGTTGCTTCG 361
Query 691 AGGACTTCTACTTTA-C--CAAACTCTAGTGTGAAAGGTTCTGTTGGAGATGCTCAAAGA 747
||||||||||||||| | |||||||||| ||||| |||||||| |||||||||||||||
Sbjct 362 AGGACTTCTACTTTACCAGCAAACTCTAGCGTGAAGGGTTCTGTAGGAGATGCTCAAAGA 421
Query 748 GTGGAAGCTGCTAAAAGAAAA-TCTTGCTTTAATCCGTTGGCAATATGCTGTGGCGTGTT 806
||||||| |||||||| |||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 422 GTGGAAGATGCTAAAA-AAAATTCTTGCTTTAATCCTTTGGCGATATGCTGTGGCGTGTT 480
Query 807 TGTTTATGAAGATTGTCGTAGCAAAGAAGAGACGGATGAGCAGCAAGGGGATAGGGAAGA 866
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 481 TGTTTATGAAGATTGTCGTAGCAAAGATGAGACGGATGAACAGCAGGGGGATAGGGAAGA 540
Query 867 AGCTCTGTTTTGCACGTTGTGCAATGCTGAGGTCCGTAAGTTTAGCAAGCATTGTCGAAG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCTCTGTTTTGCACGTTGTGCAATGCTGAGGTCCGTAAGTTTAGCAAGCATTGTCGAAG 600
Query 927 TTGCGACAAATGTGTAGATTGTTTCGATCATCATTGCCGGTGGCTTAACAATTGTGTTGG 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 CTGCGACAAATGTGTAGATTGTTTCGATCATCATTGCCGGTGGCTTAACAATTGTGTCGG 660
Query 987 TCGCAAGAATTATATGACTTTTATATCGCTGATGGCTGTCAGTCTTCTCTGGCTCCTTAT 1046
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 TCGCAAGAATTATATGACTTTTATATCCCTGATGGCTGTCAGTCTTCTCTGGCTCCTTAT 720
Query 1047 AGAAGCAGGAGTTGGAATTGCAGTTATAGTGCGTGTATTTGTTAATAAGAAGGACATGGA 1106
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 721 TGAAGCAGGAGTTGGGATTGCAGTTATAGTGCGTGTGTTTGTTAATAAAAAGGACATGGA 780
Query 1107 AACAGAAATCGTCAATAGACTTGGAAATGGATTTTCTCGGGCACCTTTTGCCACAGTTGT 1166
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 AACCGAAATCGTCAATAGACTTGGAAATGGATTTTCTCGGGCACCTTTTGCCACTGTTGT 840
Query 1167 TGGTCTCTGTACTGCTGTTTCCATGCTGGCATTGTTTCCATTAGGTGAACTTTTCTTTTT 1226
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 TGGTCTCTGTACTGCTGTTTCCATGCTGGCATTGTTTCCATTGGGTGAACTTTTCTTTTT 900
Query 1227 CCACATGCTCCTCATTAAAAAGGGCATTACAACTTATGAATATGTTGTGGCAATGAGAGC 1286
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 901 CCACATGCTCCTCATTAAAAAGGGCATTACAACTTACGAGTATGTTGTGGCAATGAGAGC 960
Query 1287 AATGAGCGAGGCACCAGCTGGAGCTTCGATTGATGAGGAAATTCCTAACGTGCTGTATTC 1346
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 AATGAGCGAGGCACCAGCTGGAGCTTCGATTGATGAGGAACTTCCTAACGTGCTGTATTC 1020
Query 1347 TCCCTCTGGATCTGCCACGACCGGCTTTAGTGGTGGAAGCTCCCTCGG-TCTACCATACA 1405
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1021 TCCCTCTGGATCTGCCACGACCGGCTTTAGTGGTGGAAGCTCCCTCGGAT-TACCATACA 1079
Query 1406 AAGGAGCATGGTGCACTCCTCCTAGAGTGTTTGTTGATTATCAGGACGAAGTGATTCCTC 1465
| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 AGGGAGCCTGGTGTACTCCTCCTAGAGTGTTTGTTGATTATCAGGATGAAGTGATTCCTC 1139
Query 1466 ATTTGGATCCTCGGA-TGGTTCCATCAACCGTAGATCCAGATGCAGCTGAAACAGCAGAG 1524
||||||| || | || ||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1140 ATTTGGACCC-CAGAATGGTTCCGTCGACCGTAGATCCAGATGCAGCTGAAACTGCAGAG 1198
Query 1525 AGGGGCAACAAGATTCCAAAGAGACCTGTCAAAATTAGTGCTTGGAAGCTTGCAAAACTG 1584
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1199 AGGGGCAACAAGATTCCAAAGAGACCTGTCAAAATTAGTGCTTGGAAACTCGCAAAATTG 1258
Query 1585 AATTCAAATGAAGCTACAAGAGCAGCAGCCAGAGCCAGAGCATCCTCATCTGTCCTAAGA 1644
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 AATTCAAATGAAGCTACAAGGGCAGCAGCCAGAGCCAGAGCATCCTCATCTGTCTTAAGA 1318
Query 1645 CCAATAGAAAATCGTCATTTACATGATGATGAACTTAGTTCCAGAAGTGGCACCATCAGT 1704
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1319 CCAATAGAAAACCGTCATTTACATGATGATGAGCTTAGTTCCAGAAGTGGCACCATCAGT 1378
Query 1705 GTTGTAAGCAGTGTAAGCACAGAAGCAAATGGAGCTACGCTGAGTAGAGAGATAAGAAAC 1764
|| || |||||||||||||||||||||||||| ||| | |||||| ||| |||||||||
Sbjct 1379 GTAGTCAGCAGTGTAAGCACAGAAGCAAATGGGGCTGTGTTGAGTAAAGAAATAAGAAAC 1438
Query 1765 AATGATCCAATGTTGTCTCATTGTAGAAACTCTTATGCTCCAAGCCAAGGTAGTCGGGAC 1824
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1439 AATGATCCAAGGTTGTCTCATTCTAGAAACTCTTTTGCTCCAAGCCAAGGTAGTCGGGAC 1498
Query 1825 GAGTACGACACAGGGACCCATAGTATGAGCAGTCTCAGCAGTCCAAGTCATGTTCATGAG 1884
||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1499 GAGTACGACACGGGGACCCATAGTGTGAGCAGTTTCAGCAGTCCAAGTCATGTTCATGAG 1558
Query 1885 ACCGTCACACTTAGTCCTCT-CCCTCAGCATCATACAGCTGGCCACCGCTTCACTGCAGC 1943
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 1559 ACCGTCACACTTAGTCCTCTACCC-CAGTATCATACAGCTGGCCACCGCTTCACTGCAGC 1617
Query 1944 GGCCGCGTCGAATTCTTCCCGGCCACCTCTTAATCAAGCAACTAATCACATGATCCACTC 2003
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 GGCCGCGTCAAATTCTTCCCGGCCACCTCTTAATCCAGCAACTAATCACATGATCCACTC 1677
Query 2004 AACCTTTGATGAAAAGATAATGCAGAAAGGAAACCATGCAGATCCACTGCTTCTCCCTGC 2063
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1678 AACCTTTGATGAAAAGATAATGCAGAAAGGAAACCACGCTGATCCACTGCTTCTCCCTGC 1737
Query 2064 TCCTGCTGCTTCTCTTCTGAGAGATGTGAGAAGAACATCAGTTGTTTGGGACCAAGAAGC 2123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1738 TCCTGCAGCTTCTCTTCTGAGAGATGTGAGAAGAACATCAGTTGTTTGGGACCAAGAGGC 1797
Query 2124 AGGTAGATATATATCAGTTCCTGCAACAACATCTGAGCCAAGAACCAGATTCTCCTCACA 2183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1798 AGGTAGATATATATCAGTTCCTGCAACAACATCTGAGCCAAGAACCAGATTATCCTCACA 1857
Query 2184 GAACCAGCCAATTCCTAGCTCACACATGGGTAACACTCAGAATCCAAGACCCGTTGGTCA 2243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1858 GAACCAGCCAATTCCTAGCTCACACATGGGTAACACTCAGAATCCAAGACCCGTTGTTCA 1917
Query 2244 TCCGCCTCAAGATTCTTCATCTGGAAGGGCTCCACCTCCTACGCAGCAGCAGCAAGGAGA 2303
||||||||||||||| || |||||||||||||||||||| ||||||||| | |||||
Sbjct 1918 TCCGCCTCAAGATTCATCGTCTGGAAGGGCTCCACCTCC---GCAGCAGCA--A-GGAGA 1971
Query 2304 GAGACTGATGTATACAGGTGAATCAATATTCTTTGGAGGCCCCCTAGTAAATATCCCAAA 2363
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1972 GAGACTGATGTATACAGGTGACTCAATATTCTTTGGAGGGCCCCTGGTAAATATCCCGAA 2031
Query 2364 TAGAGATGGCCTAAGACACGATGGAGACTCGGGAAGAGAGGGACAAGACCGAATGACATT 2423
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2032 TAGAGATAGCCTAAGACACGATGGAGACTCGGGAAGAGAGGGACAAGACAGAATGACATT 2091
Query 2424 AACACTGCCTCGGGAAGCTAGATTCAAAAGAGACACTACCTCAAACCAACTTCCAGTGTT 2483
||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2092 GACATTGCCTCGGGAAGCTAGATTCAAAAGAGACACAACCTCAAACCAGCTTCCAGTGTT 2151
Query 2484 TGCTCCTGTAGGTACCCGCAAGTAAACCATCAGTCTTTGAAGGCT 2528
|||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 2152 TGCTCCTGTAGGTACCCGCAAGTAAACCATCACTCTGTCAAGGCT 2196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109204732415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5