BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15093.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493378 jgi|Araly1|493378|fgenesh2_kg.7__2811__AT4G15093.1 1402 0.0
> Ahg493378 jgi|Araly1|493378|fgenesh2_kg.7__2811__AT4G15093.1
Length=1046
Score = 1402 bits (759), Expect = 0.0
Identities = 921/994 (93%), Gaps = 31/994 (3%)
Strand=Plus/Plus
Query 107 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTGAGCA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 76 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTAAGCA 135
Query 167 TAGATGATTCCTTGGAAGCGAGACAATTCTTCAAATCATGGACTCAAAAAGTTCTTCCTC 226
|||| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 136 TAGACGATACCTTAGAAGCAAGACAATTCTTCAAATCATGGACTCACAAAGTTCTTCCTC 195
Query 227 AAAAACCCAAATCGATTTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCTGTCA 286
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 196 AAAAACCCAAATCGATCTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCCGTCA 255
Query 287 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTCTGGCTTCCCTGATCCTATGTACA 346
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 256 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTATGGCTTCCCTGATCCTATGTACA 315
Query 347 AGTTGAAATATGAAGCACCAGGAGCAATTGAATTAGGGAAAAGGGTTAAAGAGTTGTTAA 406
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 316 AGTTGAAATATGAAGCACCAGGAGCTATTGAATTAGGGAAGAGGGTTAAAGAGTTGTTAA 375
Query 407 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGAG 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 376 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGTG 435
Query 467 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCTGATATACCCATTTGTCAACTCTCTG 526
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 436 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCCGATATACCGATTTGTCAACTCTCTG 495
Query 527 TTCAATCAAATCAAAATGGGAGTTATCATTACAACATGGGTAAAGCATTGGCTTCATTGA 586
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 496 TTCAATCAAATCAAAATGGGAGTTATCATTATAATATGGGTAAAGCATTGGCTTCATTGA 555
Query 587 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 615
Query 647 ACTTT-AATATCACTGATGGCTCACCCGTTCCTTGGGCCTTGGAGTTTGATCATT-GGCT 704
| ||| ||||||||| |||||||| | ||||||||||| |||||||||||| ||| ||||
Sbjct 616 A-TTTCAATATCACTAATGGCTCATCGGTTCCTTGGGCTTTGGAGTTTGAT-ATTTGGCT 673
Query 705 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAAAGCTCC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 674 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAGAGCTCC 733
Query 765 GAATGCGAAAATGGCGCATCCGTGGCCCGAGCATTTGTATCCGTTACATGTTGTGATGGG 824
|||||||||| |||||||||||| ||||||||||||||| |||||||| || | ||||||
Sbjct 734 GAATGCGAAAGTGGCGCATCCGTTGCCCGAGCATTTGTACCCGTTACACGTCGCGATGGG 793
Query 825 TGCAGCAGGTGGAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 884
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TGCAGCTGGTGAAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 853
Query 885 GTCTTATTCTTCTTATAGCTTCACTTCTTCTCTTT-GAA-A-CATTTCAATCTTCATCTC 941
|||||||||||||||||||||||||||||| | || ||| | ||||| || ||| |||||
Sbjct 854 GTCTTATTCTTCTTATAGCTTCACTTCTTCCCCTTAGAAGAACATTTTAAACTTTATCTC 913
Query 942 CTAT-ACTTGTCTTTGATTAAGCTTTtgtgtgtgtgtgtTCATGTCTCTTTAATTAATAA 1000
|| | |||||||||||| ||||||||||||||| | | | | | |||
Sbjct 914 CT-TCACTTGTCTTTGACTAAGCTTTTGTGTGT-T-T----A---------A-T-AAT-- 953
Query 1001 TCCAAATCCTGTCTTGTATACGAATACAAATCCTCTATGTACTATAATATATGAAT--GT 1058
||||| | ||| |||||||| |||||||||||||||||| ||||||| ||||||| ||
Sbjct 954 -CCAAAACTTGTATTGTATACAAATACAAATCCTCTATGTTCTATAATGTATGAATATGT 1012
Query 1059 CATGTGAATTTCAATAAATTGTGTTGTTTGTAAT 1092
||||||||||||||||||||||||| ||||||||
Sbjct 1013 CATGTGAATTTCAATAAATTGTGTTCTTTGTAAT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5