BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15093.1 Length=1095 Score E Sequences producing significant alignments: (Bits) Value Ahg493378 jgi|Araly1|493378|fgenesh2_kg.7__2811__AT4G15093.1 1402 0.0 > Ahg493378 jgi|Araly1|493378|fgenesh2_kg.7__2811__AT4G15093.1 Length=1046 Score = 1402 bits (759), Expect = 0.0 Identities = 921/994 (93%), Gaps = 31/994 (3%) Strand=Plus/Plus Query 107 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTGAGCA 166 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 76 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTAAGCA 135 Query 167 TAGATGATTCCTTGGAAGCGAGACAATTCTTCAAATCATGGACTCAAAAAGTTCTTCCTC 226 |||| ||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 136 TAGACGATACCTTAGAAGCAAGACAATTCTTCAAATCATGGACTCACAAAGTTCTTCCTC 195 Query 227 AAAAACCCAAATCGATTTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCTGTCA 286 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 196 AAAAACCCAAATCGATCTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCCGTCA 255 Query 287 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTCTGGCTTCCCTGATCCTATGTACA 346 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 256 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTATGGCTTCCCTGATCCTATGTACA 315 Query 347 AGTTGAAATATGAAGCACCAGGAGCAATTGAATTAGGGAAAAGGGTTAAAGAGTTGTTAA 406 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 316 AGTTGAAATATGAAGCACCAGGAGCTATTGAATTAGGGAAGAGGGTTAAAGAGTTGTTAA 375 Query 407 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGAG 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 376 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGTG 435 Query 467 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCTGATATACCCATTTGTCAACTCTCTG 526 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 436 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCCGATATACCGATTTGTCAACTCTCTG 495 Query 527 TTCAATCAAATCAAAATGGGAGTTATCATTACAACATGGGTAAAGCATTGGCTTCATTGA 586 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 496 TTCAATCAAATCAAAATGGGAGTTATCATTATAATATGGGTAAAGCATTGGCTTCATTGA 555 Query 587 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 615 Query 647 ACTTT-AATATCACTGATGGCTCACCCGTTCCTTGGGCCTTGGAGTTTGATCATT-GGCT 704 | ||| ||||||||| |||||||| | ||||||||||| |||||||||||| ||| |||| Sbjct 616 A-TTTCAATATCACTAATGGCTCATCGGTTCCTTGGGCTTTGGAGTTTGAT-ATTTGGCT 673 Query 705 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAAAGCTCC 764 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 674 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAGAGCTCC 733 Query 765 GAATGCGAAAATGGCGCATCCGTGGCCCGAGCATTTGTATCCGTTACATGTTGTGATGGG 824 |||||||||| |||||||||||| ||||||||||||||| |||||||| || | |||||| Sbjct 734 GAATGCGAAAGTGGCGCATCCGTTGCCCGAGCATTTGTACCCGTTACACGTCGCGATGGG 793 Query 825 TGCAGCAGGTGGAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 884 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 TGCAGCTGGTGAAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 853 Query 885 GTCTTATTCTTCTTATAGCTTCACTTCTTCTCTTT-GAA-A-CATTTCAATCTTCATCTC 941 |||||||||||||||||||||||||||||| | || ||| | ||||| || ||| ||||| Sbjct 854 GTCTTATTCTTCTTATAGCTTCACTTCTTCCCCTTAGAAGAACATTTTAAACTTTATCTC 913 Query 942 CTAT-ACTTGTCTTTGATTAAGCTTTtgtgtgtgtgtgtTCATGTCTCTTTAATTAATAA 1000 || | |||||||||||| ||||||||||||||| | | | | | ||| Sbjct 914 CT-TCACTTGTCTTTGACTAAGCTTTTGTGTGT-T-T----A---------A-T-AAT-- 953 Query 1001 TCCAAATCCTGTCTTGTATACGAATACAAATCCTCTATGTACTATAATATATGAAT--GT 1058 ||||| | ||| |||||||| |||||||||||||||||| ||||||| ||||||| || Sbjct 954 -CCAAAACTTGTATTGTATACAAATACAAATCCTCTATGTTCTATAATGTATGAATATGT 1012 Query 1059 CATGTGAATTTCAATAAATTGTGTTGTTTGTAAT 1092 ||||||||||||||||||||||||| |||||||| Sbjct 1013 CATGTGAATTTCAATAAATTGTGTTCTTTGTAAT 1046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40791521190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5