BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15110.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493377 jgi|Araly1|493377|fgenesh2_kg.7__2810__AT4G15110.1 2870 0.0
> Ahg493377 jgi|Araly1|493377|fgenesh2_kg.7__2810__AT4G15110.1
Length=1874
Score = 2870 bits (1554), Expect = 0.0
Identities = 1785/1892 (94%), Gaps = 34/1892 (2%)
Strand=Plus/Plus
Query 46 TCTCTTTTCATTTGAAGATGG-T--AGCAGCCATGGCTTTTCCTGCCGCTGCTACTTATC 102
||| ||||||||||||||||| | |||| |||||||||||||| ||||||||||||||
Sbjct 1 TCTTTTTTCATTTGAAGATGGTTGCAGCAACCATGGCTTTTCCTTCCGCTGCTACTTATT 60
Query 103 CCACCCATTTCCAAGGCGGCGCTCTTCATCTGGGTAGGACCGATCATTGCCTCTTCGG-- 160
||||||||||||| ||||||| |||||||| | |||||| |||||||| ||
Sbjct 61 CCACCCATTTCCATGGCGGCGGTCTTCATC-------G--CGATCACTGCCTCTTGGGCT 111
Query 161 T-TTCTACCCTCAAACCATTTCCTCTGTGAATTCTCGGAGAGCTTCTGTTTCCATCAAGT 219
| |||||||| |||||| ||| || ||||||||| ||||||||||||||||||
Sbjct 112 TCTTCTACCCACAAACCCTTT--TC-------TCTCGGAGATCTTCTGTTTCCATCAAGT 162
Query 220 GCCAATCTACGGAGCCAAAGACGAATGGTAACATATTGGACAATGCGAGCAACCTTTTGA 279
||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 163 GCCAATCTATGGAGCCAAAGACGAGTGGTAACATATTGGACAATGCAAGCAACCTTTTAA 222
Query 280 CAAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCTCTGTCTCTG 339
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 223 CGAATTTTTTAAGTGGTGGAAGTTTGGGGTCAATGCCTACTGCTGAAGGCGCTGTCTCTG 282
Query 340 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAA 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ATTTGTTTGGAAAGCCTCTCTTTTTATCTCTTTACGACTGGTTCTTGGAGCATGGAGGAG 342
Query 400 TTTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTATTGCAA 459
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 343 TGTATAAACTTGCGTTTGGTCCAAAAGCCTTTGTTGTCATCTCAGATCCCATTGTTGCAA 402
Query 460 GGCATGTCCTCCGGGAAAATGCTTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 519
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 403 GGCATGTCCTTCGGGAAAACGCGTTTTCTTATGACAAGGGAGTTCTTGCTGAGATCTTAG 462
Query 520 AGCCGATTATGGGAAAAGGGTTAATACCGGCTGATCTAGATACGTGGAAGTTAAGAAGAA 579
|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 463 AGCCTATTATGGGAAAAGGGTTAATACCGGCTGACCTTGATACCTGGAAGTTAAGAAGAA 522
Query 580 GAGCTATCACTCCCGCATTCCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 639
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAGCTATCACTCCCGCATTTCATAAATTGTATCTAGAGGCCATGGTCAAAGTATTTAGTG 582
Query 640 ACTGTTCGGAGAAAATGATATTGAAATCTGAGAAACTCATAAGGGAGAAAGAAACTTCAA 699
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 583 ACTGTTCGGAGAAAATGATTTTGAAATCTGAGAAACTCTTAAGGGAGAAAGAAACTTCAA 642
Query 700 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTGGCTCTTGATA 759
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 643 GCGGGGAGGACACCATTGAGTTGGATCTGGAAGCAGAATTCTCGAGTCTAGCTCTTGATA 702
Query 760 TTATAGGTCTTAGCGTGTTCAACTACGATTTTGGCTCTGTCACAAAAGAGTCCCCTGTGA 819
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 703 TTATAGGTCTTAGCGTGTTCAACTACGACTTTGGCTCTGTCACAAAGGAGTCCCCTGTGA 762
Query 820 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCAAGGCAGTTTATGGAACTCTTTTCGAGGCAGAGCATCGGTCTACTTTCTACTTCCCTT 822
Query 880 ATTGGAACTTTCCTCCAGCTAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 939
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATTGGAAATTTCCTCCAGCCAGATGGATAGTTCCGAGGCAACGAAAGTTCCAAAGCGATC 882
Query 940 TGAAGATTATAAACGATTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 999
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGAAGATTATAAACGACTGCCTTGATGGCCTCATTCAAAATGCTAAAGAGACAAGACAGG 942
Query 1000 AAACAGATGTTGAGAAGCTCCAGGAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1059
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 943 AAACAGATGTGGAGAAGCTCCAGCAAAGGGACTACACTAATCTCAAGGATGCAAGTCTTT 1002
Query 1060 TGCGGTTCTTAGTCGATATGCGCGGTGTTGACATTGATGACCGGCAGCTGAGGGATGACT 1119
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1003 TGCGGTTCTTAGTCGATATGCGTGGTGTTGATATTGATGACCGGCAGCTGAGGGATGACT 1062
Query 1120 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTACTTACTTGGGCTGTTT 1179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1063 TGATGACTATGCTAATTGCTGGTCATGAGACAACAGCAGCAGTTCTTACTTGGGCTGTTT 1122
Query 1180 TCCTTCTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TCCTTTTGTCACAAAATCCTGAAAAAATTAGGAAAGCTCAAGCTGAGATTGATGCTGTGC 1182
Query 1240 TTGGTCAAGGTCCACCCACTTATGAATCAATGAAAAAGCTCGAGTACATACGACTGATCG 1299
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1183 TTGGTCACGGTCCACCCACTTATGAATCAATGAAAAACCTCGAGTACATACGACTGATCG 1242
Query 1300 TTGTAGAAGTCCTTCGTCTCTTTCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTGTAGAAGTCCTTCGTCTCTATCCTCAGCCACCTTTGCTCATCAGACGCACTCTCAAAC 1302
Query 1360 CAGAAACATTACCCGGAGGACACAAAGGGGAAAAAGAAGGTCATAAAGTTCCAAAAGGGA 1419
||||||| |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1303 CAGAAACCTTACCCGGGGGATACAAAGGTGAAAAAGAAGGTCATAAAGTCCCAAAAGGGA 1362
Query 1420 CTGATATCTTCATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CTGATATCTTTATTTCTGTGTATAATCTCCATAGATCTCCATACTTTTGGGATAATCCCC 1422
Query 1480 ACGATTTTGAGCCTGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATTGAAGGATGGG 1539
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1423 ACGATTTTGAGCCGGAGAGGTTTTTAAGAACAAAGGAGAGCAATGGAATCGAAGGATGGG 1482
Query 1540 CTGGCTTTGATCCATCTCGTAGCCCCGGGGCACTATATCCGAATGAGATAATAGCAGACT 1599
|||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||
Sbjct 1483 CTGGCTTTGATCCATCTCGTAGCCTTGGGGCACTATATCCTAATGAGATCATATCAGACT 1542
Query 1600 TTGCATTCTTACCATTTGGTGGAGGACCAAGAAAATGCATTGGAGACCAGTTTGCACTAA 1659
|||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 1543 TTGCGTTCTTACCATTTGGTGGAGGGCCAAGAAAATGCGTTGGAGACCAGTTTGCCCTAA 1602
Query 1660 TGGAATCGACCGTCGCACTAGCTATGTTGTTTCAGAAATTCGATGTGGAGCTGCGTGGAA 1719
||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1603 TGGAATCAACCGTCGCACTAGCTATGCTGTTACAGAAATTCGATGTGGAGCTGCGTGGAT 1662
Query 1720 CGCCAGAATCTGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1779
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 CGCCGGAATCCGTTGAACTCGTGAGCGGCGCAACGATTCATGCCAAAAATGGGATGTGGT 1722
Query 1780 GCAAACTAAAGAGAAGATCAAAGTGAAATT-TATGGATAGGCAAAAAGACTCAATTTTAA 1838
|||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||
Sbjct 1723 GCAAACTAAAGAGAAGATCAAAGTGAAAATCTAAGGAGAGGCAAAAAGACTCAATTTTAA 1782
Query 1839 CTTGAAGGAAGCT--GAGTGTAAATGAGAGATGATAT-GCTTATGATTCACTAAAC--G- 1892
||||||||||||| |||||||||||||| | || || |||||||||||||||||| |
Sbjct 1783 CTTGAAGGAAGCTCTGAGTGTAAATGAGAAAGGA-ATTGCTTATGATTCACTAAACTTGC 1841
Query 1893 T-ACATT-CTTGAGATTTTGAAAATGCAAAAA 1922
| ||||| ||||||||||||||||||||||||
Sbjct 1842 TTACATTTCTTGAGATTTTGAAAATGCAAAAA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5