BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15120.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493376 jgi|Araly1|493376|fgenesh2_kg.7__2809__AT4G15120.1 891 0.0
> Ahg493376 jgi|Araly1|493376|fgenesh2_kg.7__2809__AT4G15120.1
Length=779
Score = 891 bits (482), Expect = 0.0
Identities = 721/826 (87%), Gaps = 58/826 (7%)
Strand=Plus/Plus
Query 1 ATAAATACTAAACAAGGGCTCCTCTTTGATCTCTCCCATAATAATAAGAAGAAGATGGCC 60
||||||||| |||||||||||||||||||| | || | ||||| ||||||||||||
Sbjct 1 ATAAATACTGAACAAGGGCTCCTCTTTGATATATCGC---ATAAT---AAGAAGATGGCC 54
Query 61 AACTCTAACAACGACTGGTCTCAATTCTAcaacaaccaaaccttcttcaccaccgcaacc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 55 AACTCTAACAACGACTGGTCTCAGTTCTACAACAACCAAACCTTCTTCACCACCGCAACC 114
Query 121 tccaccgtcacaaccaccaccaccaccgccacGTCAGCTGATTCTCCTCTGAGTCCGGAT 180
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 115 TCCACCGTCACAACCACCACCACCACC---ACGTCAGCTGATTCTCCTCTGAATCCGGA- 170
Query 181 AA-TCGCCGTGTTGCAAAGCCAACACGTCGGAGATCTAGAGCCTCACGTCGTACACCTAC 239
|| |||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 171 AAGTCGCCGTGTTACAAAGCCAACACGTCGGAGGTCTAGAGCGTCTCGTCGTACACCTAC 230
Query 240 TACACTTTTCAACACCGACACAGCCAACTTCAGAGCCATGGTGCAACAATTCACCGGCGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TACACTTTTCAACACCGACACAGCCAACTTCAGAGCCATGGTGCAACAATTCACCGGCGG 290
Query 300 TCCATCCGCCGTTGCGTTCGGGTCTTCGCCGTCGTCTGGTTTTAGTCTCACCTCGTCTGA 359
|||||| || || || |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 291 TCCATCTGCTGTGGCTTTCGGGTCTTCGTCGTCGTCTGGTTTTAGTCTCACCTCGTCCGA 350
Query 360 TCC-CACTGCCGGAG-TATCTTCCTCTCCTTGGCAATACGCTAATTTGCAGAACCAAATG 417
|| ||||||||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 351 -CCTCACTGCCGGAGCT-TCTTCCTCTCCTTGGCAATACGCTAATTTGCAGAACCATACG 408
Query 418 GCTCAT-A--ACGAGCTAATGCAACAACAGCGACCGTACATGTTTTCGTCGTCAAACAAC 474
||||| | ||||||| ||||||| | |||||||| |||| |||||||||||| ||
Sbjct 409 TCTCATCATCACGAGCTGCCGCAACAAGATAGACCGTACTTGTTCTCGTCGTCAAACCAC 468
Query 475 GTGAGCACTCTTAGCTATCCTAACGCAGTGGCTACCGATGGTTTTGTGGGGGCggaggag 534
||||| |||||| ||||||||||||| |||| | || |||||||||| | |||||| |||
Sbjct 469 GTGAGTACTCTTGGCTATCCTAACGCGGTGGTTTCCAATGGTTTTGTAGCGGCGGATGAG 528
Query 535 agtagagagggtggtggaggaggaggaggaggTTATGCTCCGTCGTCGGAGAGGAATAGC 594
|||||||| ||||| |||||||||||| |||||||||||| ||||||| ||||||
Sbjct 529 AGTAGAGACGGTGG---AGGAGGAGGAGG---TTATGCTCCGTCTTCGGAGACAAATAGC 582
Query 595 AATACTACCTATTCCGAGGAAAAAACGGTATATTATTCTTAGAAATGTTCTTTTTCTAGT 654
|||| | || || || | | | || || || | | |||| ||| |
Sbjct 583 AATA-T---TA----GA--AAT----G-T-T-TT-TT-TT-----T-T-CTTT--CTAAT 614
Query 655 TTTTTACCTATTCCGAGGaaaaaaaa-CATAAAGGAAGAAATGTTAGGTATACTGACTTT 713
|||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 615 TTTT-ACCTATTTCGAGGAAAAAAAAACATAAAGGAAGAAATGTTAGGTATACTGACTTT 673
Query 714 GTTTGTAGCAGAATGAAAACTTTGACTATTGTAATTTTCTTTAGTT--GTTTATTG-TTT 770
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 674 GTTTGTAGCAGAATGAAAACTTTGACTATTGTAATTTTCTTTAGTTATGTTTATTTATTT 733
Query 771 TTCATATTTTGAGGACTT-GTGGACGGATAAATTAAATAAACTTAA 815
|||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 734 TTCATATTTTGAGGACTTTGTGGACGCATAAATTGAATAAACTTAA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5