BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15130.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946822 jgi|Araly1|946822|scaffold_703051.1 1417 0.0
> Ahg946822 jgi|Araly1|946822|scaffold_703051.1
Length=965
Score = 1417 bits (767), Expect = 0.0
Identities = 899/961 (94%), Gaps = 15/961 (2%)
Strand=Plus/Plus
Query 110 gaagaagaagaagaagaaATGAGCGTTAATGGTGAGAACAAGGTCTCAGGAGGAGATAGT 169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 GAAGAAGAAGAAGAAGAAATGAGCGTTAATGGTGAGAACAAGGTCTCAGGAGGAGAGAGC 63
Query 170 TCATCTTCAGATCGACCTGTTAGAGTCTACGCCGATGGGATCTTCGATTTGTTCCATTTC 229
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 64 TCATCTTCAGATCGACCTGTTAGAGTCTACGCCGATGGGATCTACGATTTGTTCCATTTC 123
Query 230 GGCCACGCTCGTGCCATCGAACAAGCCAAAAAATCGTTTCCGAATACGTATCTGCTTGTT 289
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 GGTCACGCTCGTGCCATCGAACAAGCCAAGAAATCGTTTCCGAATACGTATCTGCTTGTT 183
Query 290 GGATGTTGCAATGACGAAATTACGAACAAATTCAAGGGGAAAACTGTGATGACTGAATCT 349
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 184 GGATGCTGCAATGATGAAATTACGAACAAATTCAAGGGGAAGACTGTGATGACGGAATCT 243
Query 350 GAGCGATACGAATCTCTTCGACATTGCAAGTGGGTTGATGAAGTGATTCCAGATGCACCA 409
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 GAACGATACGAATCTCTCCGACATTGCAAGTGGGTTGATGAAGTGATTCCAGATGCTCCA 303
Query 410 TGGGTTCTTACAACAGAGTTTCTTGATAAGCATAAGATAGATTACGTAGCTCACGATGCT 469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGGGTTCTTACTACAGAGTTTCTTGATAAGCATAAGATAGATTACGTAGCTCACGATGCT 363
Query 470 CTTCCCTATGCGGATACTAGTGGAGCTGGAAATGATGTTTATGAGTTTGTAAAGTCGATT 529
||||||||||||||| | | |||||||||||| |||||||| ||||||||||||||||||
Sbjct 364 CTTCCCTATGCGGATGCGACTGGAGCTGGAAACGATGTTTACGAGTTTGTAAAGTCGATT 423
Query 530 GGGAAGTTTAAGGAGACTAAACGAACAGAGGGGATATCGACATCTGATATAATCATGAGA 589
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 GGGAAGTTTAAAGAAACTAAACGAACAGAGGGGATATCGACATCCGATATAATCATGAGA 483
Query 590 ATAGTGAAAGATTATAACCAGTATGTGTTGCGTAATCTGGACCGAGGTTATTCAAGAGAA 649
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 484 ATAGTGAAGGATTATAACCAGTATGTGTTGCGTAATCTGGATCGAGGATATTCAAGAGAA 543
Query 650 GAACTCGGTGTCAGCTTCG---AGGAGAAGAGGCTTAGAGTGAATATGAGATTGAAGAAA 706
||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 544 GAACTCGGTGTTAGTTTCGTTAAGGAGAAGAGGCTTAGAGTGAACATGAGATTGAAGAAA 603
Query 707 CTACAAGAGAAAGTTAAAGAACAACAAGAAAAGATACAAACCGTAGCAAAAACTGCTGGG 766
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTACAAGAGAAAGTGAAAGAACAACAAGAAAAGATACAAACCGTAGCAAAAACTGCTGGG 663
Query 767 ATGCACCATGATGAGTGGCTTGAAAATGCTGATCGTTGGGTGGCTGGATTTCTTGAAATG 826
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 664 ATGCACCATGATGAGTGGCTTGAAAACGCTGATCGTTGGGTTGCTGGATTTCTTGAAATG 723
Query 827 TTTGAGGAAGGTTGTCATAAAATGGGAACAGCCATCAGAGATGGGATTCAGCAACGGCTA 886
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 724 TTTGAGGAAGGTTGTCATAAAATGGGAACAGCCATCAGAGATGGGATCCAGCAACGGCTA 783
Query 887 ATGAGGCAAGAATCGGAAGAGAACCGGCGATTGCTTCAAAATGGACTGACGATTTCC-AA 945
|||||||||||||| ||||||||||| || ||||||||||||||||| || |||||| ||
Sbjct 784 ATGAGGCAAGAATCAGAAGAGAACCGACGCTTGCTTCAAAATGGACTAACAATTTCCGAA 843
Query 946 AGACAATGACGATGAACAAATGTCTGATG-ACAACGAGTTTGCA----GA--A-GAAGAC 997
| |||||||||||||||||||||| || | | | ||| ||| || | |||||
Sbjct 844 A-ACAATGACGATGAACAAATGTCAGAAGGAGAG-GAGAC-GCAACATGACCATGAAGAT 900
Query 998 TGCGTCAATGTGAGCAACAAAGGGATTGAAACAGTAAAGAAATGAGAGATTTTGGGTCAT 1057
||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 901 TGCTTAAATGTGAGCAACAAAGGGATTGAATCAGTAAAGAAATGAGAGATTTTGGCTCAT 960
Query 1058 G 1058
|
Sbjct 961 G 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5