BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15140.1

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890791 jgi|Araly1|890791|Al_scaffold_0007_2777                    726    0.0  


> Ahg890791 jgi|Araly1|890791|Al_scaffold_0007_2777
Length=504

 Score =  726 bits (393),  Expect = 0.0
 Identities = 471/507 (93%), Gaps = 12/507 (2%)
 Strand=Plus/Plus

Query  31   atggtgaatcaaagaaagctac---aagaagaagaag-ag--gaaaaggagaaTTATCCT  84
            ||||||||||||||| | ||||   |||||||||||| ||  ||||||||||||||||||
Sbjct  1    ATGGTGAATCAAAGATATCTACAAGAAGAAGAAGAAGAAGAAGAAAAGGAGAATTATCCT  60

Query  85   CTCATTACAACCAAAGTAGTTGAGTATTTGCAGCCAGTAATGTGTCGAGAGCTTCTCTGC  144
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTATTACAACCAAAGTAGTTGAGTATTTGCAGCCAGTAATGTGTCGAGAGCTTCTCTGC  120

Query  145  AAATTTCCAGATAACTCTGCTTTTGGATTCGACTACTCACAGAGCTCTCTTTGGTCTCCT  204
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  121  AAATTTCCAGATAACTCTGCTTTTGGATTTGACTACACACAGAGCTCTCTTTGGTCTCCT  180

Query  205  CTCTTGCCTCGAAATTACGCCAGTCCTTCAGATCTAGACTCCGACAGTTGCGTTTGTCGG  264
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  181  CTCTTGCCTCGAAATTACGCTAGTCCTTCAGATCTAGACTCTGACAGTTGCGTTTGTCGG  240

Query  265  AATCTTAAGCTAGGGGAGTTTCAAGTAGGCaagaagaagaagatgaagatgatgtcaatg  324
            ||||||||||| || |||||||||||||||||||||||||||||||||||| |  |||||
Sbjct  241  AATCTTAAGCTTGGAGAGTTTCAAGTAGGCAAGAAGAAGAAGATGAAGATG-T--CAATG  297

Query  325  aagaagaa---caagaagaagaGTAAATTACTGAAACTAGACATACCTTCAATGAAGAAT  381
            ||||||||   ||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct  298  AAGAAGAAGAACAAGAAGAAGAGTAAATTACTGAAATTAGACATAACTTCGATGAAGAAT  357

Query  382  GATGATTCTTCTCCTAAAATTGGCTGTTTTCCTCTCCCTACCAAGGGATGGAATGGTGTG  441
            ||||||  ||||||||||||||| || |||||| | | ||||||||||||||||||||||
Sbjct  358  GATGATGATTCTCCTAAAATTGGTTGCTTTCCTATTCATACCAAGGGATGGAATGGTGTG  417

Query  442  TTAAAGGCAGCTTCAAAACATTTCAAGAAATCGAAAAAGAAGAGAGATTCATTCGCTGAT  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  418  TTAAAGGCAGCTTCAAAACATTTCAAGAAATCGAAAAAGAAGAGAGATTCAGTGGCTGAT  477

Query  502  GCCAAGCTTCTCGACTTCAAATACTAA  528
            || ||||| ||||||||||||| ||||
Sbjct  478  GCTAAGCTACTCGACTTCAAATGCTAA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29049662754


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5