BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15160.1 Length=1103 Score E Sequences producing significant alignments: (Bits) Value Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1 686 0.0 > Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1 Length=1353 Score = 686 bits (371), Expect = 0.0 Identities = 519/587 (88%), Gaps = 23/587 (4%) Strand=Plus/Plus Query 286 CCAAAACCTCCAaccgtgaagccaccaccacctccctacgtgaagcca-ccaccacctcc 344 ||||||||||| ||||||||| || |||||||| ||| | ||| | || ||||| Sbjct 181 CCAAAACCTCCCACCGTGAAG---CCTCCACCTCCATAC---ATTCCATGC-CCTCCTCC 233 Query 345 cactgtgaagccaccaccacctccttac-gtgaagccaccaccaccccctaccgtgaagc 403 | | || | | ||| |||||| || ||||||||||||||||| || |||||||||| Sbjct 234 C-CCGT--ATTCTCCAAAACCTCC-CACGGTGAAGCCACCACCACCACCAACCGTGAAGC 289 Query 404 caccaccaccacccacgccgt--atactccaccaccacccacgccgtatactcctccacc 461 |||||||||| |||| |||| | | |||||||||||||||||||||||||| ||||| Sbjct 290 CACCACCACCTCCCA--CCGTGAAGCCACCACCACCACCCACGCCGTATACTCCACCACC 347 Query 462 acccacggtgaag---ccaccaccaccaccggtcgttaccccaccaccgccaacaccaac 518 |||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 348 ACCCACCGTGAAGCCACCACCACCACCACCAGTCGTTACCCCGCCACCGCCAACACCAAC 407 Query 519 cccagaggcgccatgtccgccaccaccaccaacaccaTATCCTCCTCCGCCTAAACCGGA 578 ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || Sbjct 408 CCCAGAGGCGCCATGCCCGCCACCTCCACCAACCCCATATCCTCCTCCGCCTAAACCAGA 467 Query 579 AACTTGTCCAATCGACGCACTGAAACTAGGCGCATGTGTGGACGTGCTAGGCGGTTTGAT 638 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 468 GACTTGTCCCATCGACGCTCTGAAACTAGGCGCGTGTGTGGACGTCCTAGGCGGTTTGAT 527 Query 639 TCACATCGGACTAGGGAAAAGCTACGCTAAGGCAAAGTGTTGCCCACTTCTTGACGACTT 698 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || Sbjct 528 TCACATCGGACTAGGGAAAAGCTACGCTAAGGCTAAGTGTTGCCCACTTCTTGAGGGTTT 587 Query 699 AGTGGGTCTTGACGCGGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACAT 758 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 AGTGGGTGTTGACGCTGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACAT 647 Query 759 TGACCTCATTATCCCAATTGCTCTAGAGGTTCTTGTCGACTGTGGTAAGACTCCTCCACC 818 |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||| Sbjct 648 TGACCTCATTATTCCAATTGCTCTTGAGCTTCTTGTCGACTGTGGTAAGACTCC---ACC 704 Query 819 TCGTGGCTTCAAGTGTCCTACTCCGCTAAAAAGGACTCCTCTCTTGG 865 ||||||||||||||||||| ||||||| |||||||||||| |||||| Sbjct 705 TCGTGGCTTCAAGTGTCCTGCTCCGCTCAAAAGGACTCCTTTCTTGG 751 Score = 525 bits (284), Expect = 3e-148 Identities = 348/378 (92%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 43 ATGGCGCTTCTTCACAAGCAAAACATTTCCTTTGTGATACTCCTCCTCCTCGGTCTCCTT 102 |||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| Sbjct 1 ATGGGGCTTCTTCACAAGCAAAACCTCTCCTTTGTGATACTACTCCTCCTCGGTCTCCTC 60 Query 103 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCACCACACCCTGTTAAA 162 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCTCCACACCCTGTTAAA 120 Query 163 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCTACCGTTAAACCACCTACTCACACC 222 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCCACCGTTAAACCACCTACTCACACC 180 Query 223 CCAAAGCCTCCCACTGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCCGCCC-TA 281 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 181 CCAAAACCTCCCACCGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCC-CCCGTA 239 Query 282 TACTCCAAAACCTCCAaccgtgaagccaccaccacctccctac-gtgaagccaccaccac 340 | ||||||||||||| || ||||||||||||||||| || || |||||||||||||||| Sbjct 240 TTCTCCAAAACCTCCCACGGTGAAGCCACCACCACCACCA-ACCGTGAAGCCACCACCAC 298 Query 341 ctcccactgtgaagccaccaccacctccttacgt-gaagccaccaccacc-ccctaccgt 398 ||||||| ||||||||||||||||| || ||| | | | |||||||| ||| ||||| Sbjct 299 CTCCCACCGTGAAGCCACCACCACCACCC-ACGCCGTATACTCCACCACCACCC-ACCGT 356 Query 399 gaagccaccaccaccacc 416 |||||||||||||||||| Sbjct 357 GAAGCCACCACCACCACC 374 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41096504526 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5