BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15160.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1 686 0.0
> Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1
Length=1353
Score = 686 bits (371), Expect = 0.0
Identities = 519/587 (88%), Gaps = 23/587 (4%)
Strand=Plus/Plus
Query 286 CCAAAACCTCCAaccgtgaagccaccaccacctccctacgtgaagcca-ccaccacctcc 344
||||||||||| ||||||||| || |||||||| ||| | ||| | || |||||
Sbjct 181 CCAAAACCTCCCACCGTGAAG---CCTCCACCTCCATAC---ATTCCATGC-CCTCCTCC 233
Query 345 cactgtgaagccaccaccacctccttac-gtgaagccaccaccaccccctaccgtgaagc 403
| | || | | ||| |||||| || ||||||||||||||||| || ||||||||||
Sbjct 234 C-CCGT--ATTCTCCAAAACCTCC-CACGGTGAAGCCACCACCACCACCAACCGTGAAGC 289
Query 404 caccaccaccacccacgccgt--atactccaccaccacccacgccgtatactcctccacc 461
|||||||||| |||| |||| | | |||||||||||||||||||||||||| |||||
Sbjct 290 CACCACCACCTCCCA--CCGTGAAGCCACCACCACCACCCACGCCGTATACTCCACCACC 347
Query 462 acccacggtgaag---ccaccaccaccaccggtcgttaccccaccaccgccaacaccaac 518
|||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 348 ACCCACCGTGAAGCCACCACCACCACCACCAGTCGTTACCCCGCCACCGCCAACACCAAC 407
Query 519 cccagaggcgccatgtccgccaccaccaccaacaccaTATCCTCCTCCGCCTAAACCGGA 578
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 408 CCCAGAGGCGCCATGCCCGCCACCTCCACCAACCCCATATCCTCCTCCGCCTAAACCAGA 467
Query 579 AACTTGTCCAATCGACGCACTGAAACTAGGCGCATGTGTGGACGTGCTAGGCGGTTTGAT 638
|||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 468 GACTTGTCCCATCGACGCTCTGAAACTAGGCGCGTGTGTGGACGTCCTAGGCGGTTTGAT 527
Query 639 TCACATCGGACTAGGGAAAAGCTACGCTAAGGCAAAGTGTTGCCCACTTCTTGACGACTT 698
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 528 TCACATCGGACTAGGGAAAAGCTACGCTAAGGCTAAGTGTTGCCCACTTCTTGAGGGTTT 587
Query 699 AGTGGGTCTTGACGCGGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACAT 758
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGTGGGTGTTGACGCTGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACAT 647
Query 759 TGACCTCATTATCCCAATTGCTCTAGAGGTTCTTGTCGACTGTGGTAAGACTCCTCCACC 818
|||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 648 TGACCTCATTATTCCAATTGCTCTTGAGCTTCTTGTCGACTGTGGTAAGACTCC---ACC 704
Query 819 TCGTGGCTTCAAGTGTCCTACTCCGCTAAAAAGGACTCCTCTCTTGG 865
||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 705 TCGTGGCTTCAAGTGTCCTGCTCCGCTCAAAAGGACTCCTTTCTTGG 751
Score = 525 bits (284), Expect = 3e-148
Identities = 348/378 (92%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 43 ATGGCGCTTCTTCACAAGCAAAACATTTCCTTTGTGATACTCCTCCTCCTCGGTCTCCTT 102
|||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 1 ATGGGGCTTCTTCACAAGCAAAACCTCTCCTTTGTGATACTACTCCTCCTCGGTCTCCTC 60
Query 103 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCACCACACCCTGTTAAA 162
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCTCCACACCCTGTTAAA 120
Query 163 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCTACCGTTAAACCACCTACTCACACC 222
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCCACCGTTAAACCACCTACTCACACC 180
Query 223 CCAAAGCCTCCCACTGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCCGCCC-TA 281
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 181 CCAAAACCTCCCACCGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCC-CCCGTA 239
Query 282 TACTCCAAAACCTCCAaccgtgaagccaccaccacctccctac-gtgaagccaccaccac 340
| ||||||||||||| || ||||||||||||||||| || || ||||||||||||||||
Sbjct 240 TTCTCCAAAACCTCCCACGGTGAAGCCACCACCACCACCA-ACCGTGAAGCCACCACCAC 298
Query 341 ctcccactgtgaagccaccaccacctccttacgt-gaagccaccaccacc-ccctaccgt 398
||||||| ||||||||||||||||| || ||| | | | |||||||| ||| |||||
Sbjct 299 CTCCCACCGTGAAGCCACCACCACCACCC-ACGCCGTATACTCCACCACCACCC-ACCGT 356
Query 399 gaagccaccaccaccacc 416
||||||||||||||||||
Sbjct 357 GAAGCCACCACCACCACC 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5