BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15200.1
Length=2296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890784 jgi|Araly1|890784|Al_scaffold_0007_2770 2713 0.0
> Ahg890784 jgi|Araly1|890784|Al_scaffold_0007_2770
Length=2349
Score = 2713 bits (1469), Expect = 0.0
Identities = 1694/1801 (94%), Gaps = 21/1801 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGATCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGGTCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60
Query 61 GAGGAGATTTTCTCTCGAGGCGGT-CTAAATCTCTTACGATTCTCTGTTTATGGCG-AA- 117
||||||||||||||||||| |||| | ||||||||| |||||||| || ||| || ||
Sbjct 61 GAGGAGATTTTCTCTCGAGACGGTGC-AAATCTCTTTCGATTCTCCGTATAT--CGAAAC 117
Query 118 GATGTGGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTATCGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177
Query 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTTCGGTCCTGCACCGAGTTTCGCGCCA 237
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTCCGGTCCTGCACCGGGTTTCGCGCCT 237
Query 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGAT-TGGTT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGATCTCGT- 296
Query 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCGG 356
Query 357 CCCAAGTGAGGAGACACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTCG 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCCAAGTGAGGAGAAACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTC- 415
Query 417 TCCTCCTCCACAACGGGAGAAGAAGGATGATATCTTGATGAAACTTATCATCGCGGTTGC 476
| ||| |||| | | |||||||||||||| ||||||||||||||||||| || |||||
Sbjct 416 -C-TCCACCACGA-G--AGAAGAAGGATGATGTCTTGATGAAACTTATCATAGCTGTTGC 470
Query 477 TTCTACCGCTGTCTTAACGTTTGTTTTTGTTGCATTGATGTTCTTGTGTTGCTTCAAACG 536
||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 471 TTCAACCGCTGTTTTAACGTTTGTTCTTGTTGCATTGATGTTCTTGTGTTGTTTCAAACG 530
Query 537 CAATTGCAACAACGCGGTTGGTTCTAGAGATGGACCTAGAGATGAAGGACCACTTCTACG 596
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 531 CAATCGCAACAACGCGGTTGGGCCTAGAGATGGACCAAGAGATGAAGGACCACTTCTACG 590
Query 597 TTTATCAACTGGATCTACTGAGAACTCTCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 656
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 TTTATCAACTGGATCTACTGAGAACTCGCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 650
Query 657 TAGTGTTGCTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTT-AAAGAGAAATG 715
||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 651 TAGTGCTACTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTTTAAA-AGAAATG 709
Query 716 GTCATGAGTTTTCAACGGCTGAATCGTCATCGGCAGCTGGACTTCCTCCGTTGAAGCTTC 775
||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 710 GTCATGAATTTTCAACGGCTGAATCTTCATCGGC---TGGACTTCCTCCATTGAAGCTTC 766
Query 776 CCCCGGGAAGATCAGcacctcctccacctcctgctgctgctccacctccacagccacctc 835
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 767 CCCCGGGAAGATCAGCGGCTCCTCCTCCTCCTGCTCCTGCTCCACCTCCACAGCCACCGC 826
Query 836 ctcctcctcctcctaaaccacaacctcctccaccgcctaaaattgctcgtcctccacctG 895
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 827 CTCCTCCTCCACCTAAACCACAACCTCCTCCACCACCTAAAATTGCTCGTCCTCCACCTG 886
Query 896 CACCTCCTAAAGGTGCGGCTCCAAAACGTCAAGGAAACACTTCCTCTGGAGATGCATCTG 955
|||| || ||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 887 CACCACCAAAAGGTGTGGCTCCAAAACGTCAAGGACATACTTCCTCTGGAGATGCATCTG 946
Query 956 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCTTTCTTTTGGGATAAAA 1015
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 947 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCGTTCTTCTGGGATAAAA 1006
Query 1016 TGGCTAACCCTGATCAAAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1075
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TGGCCAACCCTGATCAGAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1066
Query 1076 ACGAAGAGGCGATGGAGTCGCTTTTCGGTTACAACGATGGGAACAAAAACAAGAATGGTC 1135
||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1067 ACGAAGAGGCGATGGAGACGCTTTTCGGTTACAATGATGGTAACAAAAACAAGAACGGTC 1126
Query 1136 AGAAGAGTACTGATTCGTCGTTACGCGAATCTCCTCTACAATATATACAGATCATTGACA 1195
||| |||||| |||||||||| ||||||||||||| | |||||||||||||| |||||||
Sbjct 1127 AGAGGAGTACCGATTCGTCGTCACGCGAATCTCCTGTTCAATATATACAGATAATTGACA 1186
Query 1196 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTCTGAATGTAACAACAGAGGAAG 1255
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1187 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTTTGAATGTAACAACAGAAGAAG 1246
Query 1256 TCGTTGATGCCATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1315
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TCGTCGATGCAATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1306
Query 1316 AGATGGCTCCAACTTCAGAAGAAGAACTCAAACTTAGACTATACTCGGGAGATCTTCACT 1375
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1307 AGATGGCTCCAACATCAGAAGAAGAACTCAAACTTAGACTATACTCGGGCGATCTTCACT 1366
Query 1376 TACTTGGCCCCGCGGAGCGGTTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1435
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TACTTGGCCCCGCGGAACGATTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1426
Query 1436 GTATAGAGTCACTTCTATTTATGATCTCACTTCAAGAAGAAGTCTCTGGACTCAAAGAAG 1495
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1427 GTATAGAGTCACTTCTATTCATGATCTCACTTCAAGAAGAAGTCTCTGGCCTCAAAGAAG 1486
Query 1496 CTCTCGGAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTTTAAAAC 1555
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1487 CTCTCGCAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTCTAAAAC 1546
Query 1556 TACTAGAGGCAGTTCTCAAGACAGGGAATCGAATGAATGTTGGAACTTTCCGCGGTGATG 1615
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1547 TACTAGAGGCAGTTCTCAAGACAGGAAACCGAATGAATGTAGGAACTTTCCGCGGTGATG 1606
Query 1616 CGCAGGCTTTCAAGCTCGATACTCTTTTGAAGCTCTCTGACGTGAAAGGAACTGATGGCA 1675
||||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||
Sbjct 1607 CGCAGGCTTTCAAACTCGATACTCTTTTAAAACTCTCTGACGTCAAGGGAACTGATGGCA 1666
Query 1676 AAACTACACTTTTACATTTTGTTGTTCTTGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1735
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1667 AAACTACACTTTTACATTTCGTTGTTCTCGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1726
Query 1736 TTCGCCTTCAGAGCCGAAGCTTCTCAAGCGTTAAAACCGATGATTCAA-ACGCGGATTCT 1794
|||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||
Sbjct 1727 TTCGCCTTCAGAGCCGAAGCTTCTCAAGTGTTAAAACAGATGATTCAGTA-GCGGATTCT 1785
Query 1795 A 1795
|
Sbjct 1786 A 1786
Score = 708 bits (383), Expect = 0.0
Identities = 463/502 (92%), Gaps = 4/502 (1%)
Strand=Plus/Plus
Query 1796 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGTTTGGCTGCAACATTGG 1855
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1850 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGATTGGCTGCAACATTGG 1909
Query 1856 CGAATATAAGCGGTTCACTTACGAATGCGAGGGAGTTTTTGAAAACAATGGATGAAGAGA 1915
| ||| |||| || || ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1910 CAAATCTAAGTGGCTCGCTTACGAATGCAAGGGAGTTTTTGAAAACGATGGACGAAGAGA 1969
Query 1916 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGATTTTAAATGGT 1975
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1970 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGACATCAAATGGT 2029
Query 1976 TGAAGGAAGAAGAAGAGAGAATCATGGTTTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2035
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2030 TGAAAGAAGAAGAAGAGAGAATAATGGTGTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2089
Query 2036 GGAAGTCTGCGAAAAACGAAGGACTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATAA 2095
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2090 GGAAATCTGCGAAAAACGAAGGGCTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATTA 2149
Query 2096 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACTACAAAGACGACGAACCATTCAGGTA 2155
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||
Sbjct 2150 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACAACGAAGACGAAGAACCATTCGGGTA 2209
Query 2156 AGAAGGAAAGC-GAAATGACAACTTCGGACAGTAATCAACCGTCTCCGGAC-TTCCGACA 2213
||||||||| | || | || |||| |||||||||||||||||||||||| ||| ||||
Sbjct 2210 AGAAGGAAA-CTGATACGATGTCTTCAGACAGTAATCAACCGTCTCCGGACATTC-GACA 2267
Query 2214 ACGTTTGTTTCCAGCGATTGCTGAACGAAGAATGGATAGTTCGGATGATTCAGACGATGA 2273
|||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2268 ACGTTTATTTCCAGCGATTGCTGAACGGAGAATCGACAGTTCGGATGATTCAGACGATGA 2327
Query 2274 AGAGGATAGTTCACCTTCGTAG 2295
|| |||||||||||||| |||
Sbjct 2328 GGAAGATAGTTCACCTTCTTAG 2349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86464856150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5