BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15200.1 Length=2296 Score E Sequences producing significant alignments: (Bits) Value Ahg890784 jgi|Araly1|890784|Al_scaffold_0007_2770 2713 0.0 > Ahg890784 jgi|Araly1|890784|Al_scaffold_0007_2770 Length=2349 Score = 2713 bits (1469), Expect = 0.0 Identities = 1694/1801 (94%), Gaps = 21/1801 (1%) Strand=Plus/Plus Query 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGATCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGGGAGATTGAGATTAGCGTTTTTGGCGGTCTCTCTCGTTGTTTTCGTTTGTGTTTCC 60 Query 61 GAGGAGATTTTCTCTCGAGGCGGT-CTAAATCTCTTACGATTCTCTGTTTATGGCG-AA- 117 ||||||||||||||||||| |||| | ||||||||| |||||||| || ||| || || Sbjct 61 GAGGAGATTTTCTCTCGAGACGGTGC-AAATCTCTTTCGATTCTCCGTATAT--CGAAAC 117 Query 118 GATGTGGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TCTATCGCAGAGCAAACATGGATTCATCAAAATCCGAGAAGGAAGCTGATCAGTTATCCA 177 Query 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTTCGGTCCTGCACCGAGTTTCGCGCCA 237 |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 178 AAAAAGTTTAGTGTCTCTGCTCCAAATTTAGCTTCCGGTCCTGCACCGGGTTTCGCGCCT 237 Query 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGAT-TGGTT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 238 GGACCTGGGCCAAGTTTTGCGCCAGGTCCTGCACCGAATCCTCGTAGTTATGATCTCGT- 296 Query 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 297 AGCACCTGCAAGTTCTCCAAATGAACCTCCAGCTGAGACACCGGATGAATCGAGTCCCGG 356 Query 357 CCCAAGTGAGGAGACACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTCG 416 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TCCAAGTGAGGAGAAACCGAGTGTTGTTGCTCCTAGTCAAAGTGTTCCGGGTCCTCCTC- 415 Query 417 TCCTCCTCCACAACGGGAGAAGAAGGATGATATCTTGATGAAACTTATCATCGCGGTTGC 476 | ||| |||| | | |||||||||||||| ||||||||||||||||||| || ||||| Sbjct 416 -C-TCCACCACGA-G--AGAAGAAGGATGATGTCTTGATGAAACTTATCATAGCTGTTGC 470 Query 477 TTCTACCGCTGTCTTAACGTTTGTTTTTGTTGCATTGATGTTCTTGTGTTGCTTCAAACG 536 ||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 471 TTCAACCGCTGTTTTAACGTTTGTTCTTGTTGCATTGATGTTCTTGTGTTGTTTCAAACG 530 Query 537 CAATTGCAACAACGCGGTTGGTTCTAGAGATGGACCTAGAGATGAAGGACCACTTCTACG 596 |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 531 CAATCGCAACAACGCGGTTGGGCCTAGAGATGGACCAAGAGATGAAGGACCACTTCTACG 590 Query 597 TTTATCAACTGGATCTACTGAGAACTCTCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 656 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 591 TTTATCAACTGGATCTACTGAGAACTCGCCCACCGTCGCAAGCACGAGCCGGAAAATGTT 650 Query 657 TAGTGTTGCTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTT-AAAGAGAAATG 715 ||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 651 TAGTGCTACTAGTTCGAAAAAGAGGTCGTTTCTTTCTAGAGTATCTTTTAAA-AGAAATG 709 Query 716 GTCATGAGTTTTCAACGGCTGAATCGTCATCGGCAGCTGGACTTCCTCCGTTGAAGCTTC 775 ||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct 710 GTCATGAATTTTCAACGGCTGAATCTTCATCGGC---TGGACTTCCTCCATTGAAGCTTC 766 Query 776 CCCCGGGAAGATCAGcacctcctccacctcctgctgctgctccacctccacagccacctc 835 |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| | Sbjct 767 CCCCGGGAAGATCAGCGGCTCCTCCTCCTCCTGCTCCTGCTCCACCTCCACAGCCACCGC 826 Query 836 ctcctcctcctcctaaaccacaacctcctccaccgcctaaaattgctcgtcctccacctG 895 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 827 CTCCTCCTCCACCTAAACCACAACCTCCTCCACCACCTAAAATTGCTCGTCCTCCACCTG 886 Query 896 CACCTCCTAAAGGTGCGGCTCCAAAACGTCAAGGAAACACTTCCTCTGGAGATGCATCTG 955 |||| || ||||||| ||||||||||||||||||| | |||||||||||||||||||||| Sbjct 887 CACCACCAAAAGGTGTGGCTCCAAAACGTCAAGGACATACTTCCTCTGGAGATGCATCTG 946 Query 956 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCTTTCTTTTGGGATAAAA 1015 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 947 ATGTTGATTCTGAGACTGGAGCTCCAAAAACAAAACTAAAGCCGTTCTTCTGGGATAAAA 1006 Query 1016 TGGCTAACCCTGATCAAAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1075 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 TGGCCAACCCTGATCAGAAAATGGTTTGGCATGAGATTAGCGCCGGTTCATTCCAGTTCA 1066 Query 1076 ACGAAGAGGCGATGGAGTCGCTTTTCGGTTACAACGATGGGAACAAAAACAAGAATGGTC 1135 ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||| Sbjct 1067 ACGAAGAGGCGATGGAGACGCTTTTCGGTTACAATGATGGTAACAAAAACAAGAACGGTC 1126 Query 1136 AGAAGAGTACTGATTCGTCGTTACGCGAATCTCCTCTACAATATATACAGATCATTGACA 1195 ||| |||||| |||||||||| ||||||||||||| | |||||||||||||| ||||||| Sbjct 1127 AGAGGAGTACCGATTCGTCGTCACGCGAATCTCCTGTTCAATATATACAGATAATTGACA 1186 Query 1196 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTCTGAATGTAACAACAGAGGAAG 1255 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1187 CTAGGAAAGCTCAAAACTTATCTATTCTTCTTCGAGCTTTGAATGTAACAACAGAAGAAG 1246 Query 1256 TCGTTGATGCCATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1315 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1247 TCGTCGATGCAATCAAAGAAGGTAATGAGCTCCCAGTGGAGCTTCTACAAACATTGCTGA 1306 Query 1316 AGATGGCTCCAACTTCAGAAGAAGAACTCAAACTTAGACTATACTCGGGAGATCTTCACT 1375 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1307 AGATGGCTCCAACATCAGAAGAAGAACTCAAACTTAGACTATACTCGGGCGATCTTCACT 1366 Query 1376 TACTTGGCCCCGCGGAGCGGTTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1435 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1367 TACTTGGCCCCGCGGAACGATTCTTGAAAATTCTTGTTGATATACCTTTTGCATTTAAAC 1426 Query 1436 GTATAGAGTCACTTCTATTTATGATCTCACTTCAAGAAGAAGTCTCTGGACTCAAAGAAG 1495 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1427 GTATAGAGTCACTTCTATTCATGATCTCACTTCAAGAAGAAGTCTCTGGCCTCAAAGAAG 1486 Query 1496 CTCTCGGAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTTTAAAAC 1555 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1487 CTCTCGCAACTCTCGAGGTGGCTTGCAAGAAACTTAGAAACAGCAGACTGTTTCTAAAAC 1546 Query 1556 TACTAGAGGCAGTTCTCAAGACAGGGAATCGAATGAATGTTGGAACTTTCCGCGGTGATG 1615 ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 1547 TACTAGAGGCAGTTCTCAAGACAGGAAACCGAATGAATGTAGGAACTTTCCGCGGTGATG 1606 Query 1616 CGCAGGCTTTCAAGCTCGATACTCTTTTGAAGCTCTCTGACGTGAAAGGAACTGATGGCA 1675 ||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||||| Sbjct 1607 CGCAGGCTTTCAAACTCGATACTCTTTTAAAACTCTCTGACGTCAAGGGAACTGATGGCA 1666 Query 1676 AAACTACACTTTTACATTTTGTTGTTCTTGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1735 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1667 AAACTACACTTTTACATTTCGTTGTTCTCGAGATCATTCGTTCTGAAGGCGTTCGTGCTC 1726 Query 1736 TTCGCCTTCAGAGCCGAAGCTTCTCAAGCGTTAAAACCGATGATTCAA-ACGCGGATTCT 1794 |||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| Sbjct 1727 TTCGCCTTCAGAGCCGAAGCTTCTCAAGTGTTAAAACAGATGATTCAGTA-GCGGATTCT 1785 Query 1795 A 1795 | Sbjct 1786 A 1786 Score = 708 bits (383), Expect = 0.0 Identities = 463/502 (92%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 1796 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGTTTGGCTGCAACATTGG 1855 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1850 AGCTTGAAGATGTCAAGAGAGCAGCCATCATAGACGCTGATGGATTGGCTGCAACATTGG 1909 Query 1856 CGAATATAAGCGGTTCACTTACGAATGCGAGGGAGTTTTTGAAAACAATGGATGAAGAGA 1915 | ||| |||| || || ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 1910 CAAATCTAAGTGGCTCGCTTACGAATGCAAGGGAGTTTTTGAAAACGATGGACGAAGAGA 1969 Query 1916 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGATTTTAAATGGT 1975 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1970 GCGATTTCGAACGAGCATTAGCTGGATTTATAGAACGTGCAGATGCTGACATCAAATGGT 2029 Query 1976 TGAAGGAAGAAGAAGAGAGAATCATGGTTTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2035 |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 2030 TGAAAGAAGAAGAAGAGAGAATAATGGTGTTGGTGAAAAGCTCTGCTGATTATTTCCATG 2089 Query 2036 GGAAGTCTGCGAAAAACGAAGGACTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATAA 2095 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 2090 GGAAATCTGCGAAAAACGAAGGGCTACGTTTGTTCGCTATAGTGCGCGATTTCTTGATTA 2149 Query 2096 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACTACAAAGACGACGAACCATTCAGGTA 2155 |||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |||| Sbjct 2150 TGTTGGAGAAAGTTTGCAGAGAAGTTAAGGAAACAACGAAGACGAAGAACCATTCGGGTA 2209 Query 2156 AGAAGGAAAGC-GAAATGACAACTTCGGACAGTAATCAACCGTCTCCGGAC-TTCCGACA 2213 ||||||||| | || | || |||| |||||||||||||||||||||||| ||| |||| Sbjct 2210 AGAAGGAAA-CTGATACGATGTCTTCAGACAGTAATCAACCGTCTCCGGACATTC-GACA 2267 Query 2214 ACGTTTGTTTCCAGCGATTGCTGAACGAAGAATGGATAGTTCGGATGATTCAGACGATGA 2273 |||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 2268 ACGTTTATTTCCAGCGATTGCTGAACGGAGAATCGACAGTTCGGATGATTCAGACGATGA 2327 Query 2274 AGAGGATAGTTCACCTTCGTAG 2295 || |||||||||||||| ||| Sbjct 2328 GGAAGATAGTTCACCTTCTTAG 2349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86464856150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5