BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15210.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493370 jgi|Araly1|493370|fgenesh2_kg.7__2803__AT4G15210.1 2706 0.0
> Ahg493370 jgi|Araly1|493370|fgenesh2_kg.7__2803__AT4G15210.1
Length=1886
Score = 2706 bits (1465), Expect = 0.0
Identities = 1781/1926 (92%), Gaps = 52/1926 (3%)
Strand=Plus/Plus
Query 2 AGACATGTGAGCTTCATCTACTACT-CATATTGCTTATATTTTCCTACAACACTCTCTCA 60
|||||||||||||||| |||||||| | |||||||||||||||||||||||| ||
Sbjct 1 AGACATGTGAGCTTCAACTACTACTACTTATTGCTTATATTTTCCTACAACA----CT-- 54
Query 61 ACaaaaaaacaaaaaaaaaaGACGTTCTTTCTTTGTTTGTATTTAGAAGAAAAATGGCTA 120
| |||| ||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 55 -C---AAAA-AAAAAAAAACCA-GTTCTTTCTTTGTTTGTATTTAGAAG-AAAATGGCTG 107
Query 121 CCAATTACAACGAGAAGCTTCTTCTTAATTATGTTCCCGTTTACGTTATGCTTCCGTTGG 180
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 108 CCAATTACAACGAAAAGCTTCTTCTTAACTATGTTCCCGTTTACGTTATGCTTCCGCTGG 167
Query 181 GAGTTGTGAATGTGGAAAATGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTTAAAC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 168 GAGTTGTGAATGTGGAAAACGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTCAAGC 227
Query 241 GTCTCAAAGAAGAAGCTGGCGTTGATGGCGTTATGGTCGATGTTTGGTGGGGAATCATAG 300
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 228 GTCTCAAAGAAGAAGCTGGCGTCGACGGCGTGATGGTCGATGTTTGGTGGGGAATCATAG 287
Query 301 AATCCAAAGGTCCCAAACAATATGATTGGACGGCCTACAAAACGCTGTTCCAGCTGATCG 360
|||||||||||||||||||||| |||||||| |||||||||||||| |||||| | ||||
Sbjct 288 AATCCAAAGGTCCCAAACAATACGATTGGACCGCCTACAAAACGCTATTCCAGTTAATCG 347
Query 361 CACGTTTGGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGTGGAAACGTTG 420
| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 348 CGCGTTTAGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGCGGGAACGTCG 407
Query 421 GCGACATCGTTACTATCCCGATCCCACAATGGGTTCGCGATGTCGGTGACAATGATCCCG 480
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 408 GCGACATCGTTACTATCCCGATCCCACAATGGGTGCGCGATGTCGGCGACAACGATCCCG 467
Query 481 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCAATCGGTGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 468 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCCATCGGTGTTG 527
Query 541 ATAATCTTCCCCTATTTGCCGGAAGAACCGCTGTTCAGTTGTACAGTGATTACATGAGTA 600
|||| |||||||| || |||||||||||||| |||||| | |||||||||||||||||||
Sbjct 528 ATAACCTTCCCCTCTTCGCCGGAAGAACCGCGGTTCAGATATACAGTGATTACATGAGTA 587
Query 601 GCTTCAAAGAAAACATGGCGGATTTGATAGAAGCTGGGGTGATTGTTGACATCGAAGTCG 660
||||||||||||||||| |||||||||||||||| || | |||||||||||| |||||||
Sbjct 588 GCTTCAAAGAAAACATGACGGATTTGATAGAAGCCGGCGCGATTGTTGACATTGAAGTCG 647
Query 661 GACTTGG-CCCGGCCGGTGAACTACGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTG 719
||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 GACTTGGTCCC-GCCGGTGAACTTCGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTA 706
Query 720 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 766
Query 780 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGACTTGCCAGAGGACGCCGGAGAATACAAT 839
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 767 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGATTTGCCGGAGGACGCCGGAGAATACAAT 826
Query 840 GACAAGCCGGAGGAGACTGGATTTTTCAAGAAGGA-TGGGACTTATGTCTCGGAGAAGGG 898
||||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||
Sbjct 827 GACAAGCCGGAGGAGACTGGATTTTTCAAGA-GAAATGGGACTTATGTCTCGGAGGAGGG 885
Query 899 GAAGTTTTTCATGACATGGTACTCGAACAAACTAATTTTTCATGGAGATCAGATCTTAGG 958
|||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 886 GAAGTTTTTCTTGACATGGTACTCGAACAAACTCATCTTTCATGGAGATCAGATCATAGG 945
Query 959 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCTGGGAT 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 946 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCGGGGAT 1005
Query 1019 TCACTGGTTGTACAACCACCACAGCCACGCTGCGGAGTTGACTGCTGGATATTACAACCT 1078
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 1006 TCACTGGTTGTACAACCACCACAGCCACGCGGCGGAGCTGACTGCTGGATATTATAACCT 1065
Query 1079 TTTCAAGAGAGATGGTTACCGTCCGATCGCCCGGATGCTCTCAAAACACTACGGCATTCT 1138
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1066 CTTCAAGAGAGATGGTTACCGTCCTATCGCTCGGATGCTCTCAAAACACTACGGCATTCT 1125
Query 1139 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACAGCTGAAGCCCTAAGTGCTCC 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1126 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACCGCTGAAGCCCTAAGTGCTCC 1185
Query 1199 TCAAGAACTTGTTCAAGAGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1258
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CCAAGAACTTGTTCAAGTGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1245
Query 1259 TGAGAACGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAGATTCTTCTTAACGCGAG 1318
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1246 TGAGAATGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAAATTCTTCTTAACGCGAG 1305
Query 1319 GCCTAACGGGGTTAACCCAAACGGTAAGCCGAAGCTTAGAATGTACGGATTTACTTACCT 1378
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1306 GCCTAACGGGGTTAACCCGAATGGTAAACCGAAGCTTAGAATGTACGGATTTACTTACCT 1365
Query 1379 TCGGTTATCCGATACTGTCTTTCAAGAAAACAACTTTGAGCTGTTTAAGAAGTTGGTGAG 1438
||||||||| ||||| |||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 1366 TCGGTTATCTGATACGGTCTTTCAAGAAGACAACTTTAAGCTGTTCAAGAAGTTGGTGAG 1425
Query 1439 GAAAATGCACGCTGATCAAGATTATT---GTGGAGACGCAGCGAAGTACGGGCATGAGAT 1495
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1426 GAAAATGCATGCTGATCAAGATAATTACTGTGGAGACGCAGCGAAGTACGGGCATGAGAT 1485
Query 1496 TGTGCCGTTGAAAACGTCGAATTCGCAGCTGACGCTGGAGGATATCGCCGACGCGGCTCA 1555
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1486 TGTGCCGCTGAAAACGCCGAATTCGCAGCTGACGGTGGAGGATATCGCCGACGCGGCTCA 1545
Query 1556 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGATTTGAAGGTCGACGGTT-AGTTAT 1614
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 1546 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGACATGAAGGTCGACGGTTGA-TTAT 1604
Query 1615 ATTTTATATGATCGATCGTCTAATCACaaagaaagtaagggaaagaatcaaggaagtaag 1674
|||| ||||||| |||||||||||||||||||||||||| ||| ||| | | | | |
Sbjct 1605 ATTT-ATATGATTGATCGTCTAATCACAAAGAAAGTAAGAGAAGGAAAC--GT--G-A-G 1657
Query 1675 aataagaagataataaataaagagaataagaagaGGCATTTGCAACTTTAAGAGGTTAAA 1734
|||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1658 AATAAGAAGAGAATAAATAAAGAGAATAAGAAGAGGTATTTACAACTTTAAGGGGTTAAA 1717
Query 1735 ATTTCTTAAATGAGTCTGAGTTTCGTTGTGTGTTTTGGGTGTACCATAAGAAATAAAACG 1794
||||| |||||| | || ||| || |||| ||| |||| ||||| |||||||||||||
Sbjct 1718 ATTTCGTAAATGT-T-TG-GTT--GT-GTGT-TTT-GGGT-TACCAGAAGAAATAAAACG 1768
Query 1795 TACGGGGTTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAAT-ATTAGTCTGCGTA 1853
| | ||||||||||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 1769 T--GT--TTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAATTATG-G-CTGTGTA 1822
Query 1854 ATaaaaaaaaGTATGT--GTAGTAAAAA--TAAATAACTGTTGCCAGTAAAATAATGCAT 1909
|||||||||||| ||| || ||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1823 ATAAAAAAAAGT-TGTTTGT-GTAAAAAAATAAATAAGTGTTGTCAGTAAAATAATGCAT 1880
Query 1910 CATTGT 1915
||||||
Sbjct 1881 CATTGT 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5