BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15248.1

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493364 jgi|Araly1|493364|fgenesh2_kg.7__2797__AT4G15248.1         592    1e-168


> Ahg493364 jgi|Araly1|493364|fgenesh2_kg.7__2797__AT4G15248.1
Length=435

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 386/418 (92%), Gaps = 3/418 (1%)
 Strand=Plus/Plus

Query  20   aagaaagagtaaagatgtgtagagg-gtttgagaaagaagaagagagaagaagCGACAAT  78
            |||| |||||||||||||| | ||| | |||||||| ||||||||||||||| |||| ||
Sbjct  1    AAGAGAGAGTAAAGATGTGCAAAGGAG-TTGAGAAAAAAGAAGAGAGAAGAAACGACGAT  59

Query  79   GGAGGATGCCAAAGACTATGCACGGAGAGTCACAAAGCTCCGGTAAGCTGTGAGCTTTGC  138
            ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct  60   GGAGGATGCCAAAGACTATGCACGGAGAGTCCCAGAGCTCCGGTGAGCTGTGAGCTTTGC  119

Query  139  GGCGAGAACGCCACCGTGTATTGTGAGGCAGACGCAGCTTTCCTTTGTAGGAAATGCGAT  198
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  120  GGCGAGAACGCCACCGTGTATTGTGAGGCAGACGCGGCTTTCCTTTGTAGGAAATGTGAT  179

Query  199  CGATGGGTCCATTCTGCTAATTTTCTAGCTCGGAGACATCTCCGGCGCGTGATCTGCACG  258
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  180  CGATGGGTCCATTCTGCTAATTTTCTTGCTCGGAGACATCTCCGGCGCGTGATCTGCACG  239

Query  259  ACCTGTCGGAAGCTAACTCGTCGATGTCTTGTCGGTGATAATTTTAATGTTGTTTTACCG  318
            ||||||| |||| ||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct  240  ACCTGTCAGAAGTTAACTCGTCAATGTCTTGTCGGTGATAGTTTTAATGTCGTTTTACCG  299

Query  319  GAGATAAGGATGATAGCAAGGATTGAAGAACATAGTAGTGATCACAAAATTCCCTTTGTG  378
            |||||||||| ||| |||||| |||||||| ||||||||||||||||| | |||||||||
Sbjct  300  GAGATAAGGACGATGGCAAGGGTTGAAGAAGATAGTAGTGATCACAAAGTCCCCTTTGTG  359

Query  379  TTTCTCTGATTT-TATGTTTTGTTTTTCGCGTAATTAAGATTAAATATTGGTAGGGTT  435
            |||||||||||| | |||||| |||||| |||||| |||||||||| |||||| ||||
Sbjct  360  TTTCTCTGATTTCTTTGTTTTATTTTTCTCGTAATGAAGATTAAATCTTGGTAAGGTT  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19154105678


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5