BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15250.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329983 jgi|Araly1|329983|fgenesh1_pm.C_scaffold_7002210 1447 0.0
> Ahg329983 jgi|Araly1|329983|fgenesh1_pm.C_scaffold_7002210
Length=993
Score = 1447 bits (783), Expect = 0.0
Identities = 925/995 (93%), Gaps = 4/995 (0%)
Strand=Plus/Plus
Query 3 ATGGAGGCTCGATGTGACTTTTGTGGAACCGAAAAAGCATTAATCTACTGCAAATCTGAT 62
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGGAGGCTCGATGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGAT 60
Query 63 TCGGCTAAACTTTGTTTAAACTGTGACGTTAATGTACACTCAGCGAATCCTCTGTCTCAA 122
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 61 TTGGCTAAACTTTGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAA 120
Query 123 AGACACACGC-GATCTCTACTCTGCGAGAAATGTTCCTTACAACCCACGGCAGTACACTG 181
|||||||| | || || |||||||||||||||||| ||| |||||||||| | | |||||
Sbjct 121 AGACACACACGGA-CTTTACTCTGCGAGAAATGTTTCTTGCAACCCACGGTAATCCACTG 179
Query 182 TATGAACGAAAATGTTTCTCTTTGCCAAGGATGTCAGTGGACCGCTAGTAACTGCACTGG 241
||||||||| || ||||||||||| ||||||||||| |||||||| | ||||||||||||
Sbjct 180 TATGAACGAGAAGGTTTCTCTTTGTCAAGGATGTCAATGGACCGCAACTAACTGCACTGG 239
Query 242 TTTAGGACACAGACTTCAGAGTCTGAACCCTTACTCTGATTGTCCTTCTCCATCAGATTT 301
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 240 TTTAGGACACAGACTTCAGAATCTGAATCCTTACTCTGGTTGTCCTTCTCCATCAGATTT 299
Query 302 CGGCAAGATCTGGTCTTCAACTTTAGAACCTTCTGTCACAAGTTTGGTCTCTCCATTTTC 361
|| ||||||||||||||| | |||||||||||||||| ||| || ||||||||||||| |
Sbjct 300 CGCCAAGATCTGGTCTTCGATTTTAGAACCTTCTGTCTCAAATTGGGTCTCTCCATTTCC 359
Query 362 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGGTTACACA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGATTACACA 419
Query 422 AACTCAGAACCTTAAAGACTATTCTTCTTTC-TTTCCTATGGAATCTAATCTTCCAAAAG 480
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 420 AACTCAGAATCTTAAAGACTATTCTTCTTTCTTTTCC-ATGGAATCTAATCTTCCTAAAG 478
Query 481 TGATAGAAGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAACTTAGATGATGCGC 540
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 TGATAGAGGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAATTTGGATGATGCGC 538
Query 541 CGTTGAATTTCAACGCAAGCAATGATATAATCGGATGTTCATCACTTGACAATACCAAAT 600
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 539 CATTGAATTTCAACGCAAGCAATGATATTATCGGATGTTCATCACTTGATAATACCAAAT 598
Query 601 GTTACGAGTACGAGGATTCTTTTAAGGAAGAGAATAACATTGGCCTTCCTTCATTACTGC 660
||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 GTTACCAGTATGAGGAGTCTTTTAAGGAAGAGAATAACATTGGAATTCCTTCATTACTGC 658
Query 661 TTCCTACTTTATCCGGGAACGTTGTACCGAACATGTCACTTTCGATGTCTAACCTCACAG 720
||||| | |||||||| || ||||| |||| ||||||| |||||||||| ||| ||||||
Sbjct 659 TTCCTGCGTTATCCGGAAATGTTGTTCCGAGCATGTCAATTTCGATGTCAAACATCACAG 718
Query 721 GAGAAAGCAATGCGACTGATTACCAAGATTGCGGAATTTCACCAGGGTTTCTCATAGGAG 780
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 GAGAAAACAGTGCGACTGATTACCAAGATTGCGGAATTTCGCCAGGGTTTCTCATAGGAG 778
Query 781 ATTCGCCATGGGAATCGAATGTTGAAGTTAGTTTTAATCCAAAATTAAGGGATGAGGCTA 840
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 779 ATTCGCCATGGGAATCGAATGTTGAAGTCAGTTTTAATCCAAAATCAAGGGATGAGGCTA 838
Query 841 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATAAGATATGCAT 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATACGATATGCAT 898
Query 901 CACGCAAAGCCAGAGCTGATACGAGAAAACGGGTCAAAGGGAGATTTGTAAAATCTGGAG 960
|||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 899 CACGCAAAGCTAGAGCTGATACGAGAAAACGAGTGAAAGGAAGATTTGTGAAATCTGGAG 958
Query 961 AAACTTTTGAGTATGATCCGTCACTGGTGATGTGA 995
|||| ||||||||||||||||||||||| ||||||
Sbjct 959 AAACATTTGAGTATGATCCGTCACTGGTTATGTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5