BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15260.1
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946800 jgi|Araly1|946800|scaffold_703029.1 1408 0.0
Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1 1061 0.0
Ahg333019 jgi|Araly1|333019|fgenesh1_pm.C_scaffold_9000047 741 0.0
Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1 448 8e-125
> Ahg946800 jgi|Araly1|946800|scaffold_703029.1
Length=1442
Score = 1408 bits (762), Expect = 0.0
Identities = 1241/1466 (85%), Gaps = 57/1466 (4%)
Strand=Plus/Plus
Query 21 AAAAACAGAAATGAAGAAGATTGAGCTCGTGTTCATACC-TTCGCCGGGAATCGGCCATC 79
|||||||||||| |||||| ||||||||||||||||| || ||||||||| | ||||
Sbjct 11 AAAAACAGAAAT---GAAGATCGAGCTCGTGTTCATACCGTT-GCCGGGAATTAGTCATC 66
Query 80 TCCGGCCAACCGTGAAGCTAGCAAAGCAACTCATCGGA-AGCGAAGAACATTTTTTCAAT 138
|||| ||| |||||||||| |||||||||||||| || ||||| | || | |||| ||
Sbjct 67 TCCGACCAGCCGTGAAGCTCGCAAAGCAACTCAT-TGAGAGCGACG-ACCGTCTTTCGAT 124
Query 139 CACCGTAATCATCATCCCTTCTAGAAACGACGCCGGTGATGCAACCGCCTATATCGCATC 198
||||||||||||||||||||| ||| ||| |||||||||||| |||||| |||||||
Sbjct 125 CACCGTAATCATCATCCCTTCAAGATTCGATGCCGGTGATGCATCCGCCTCTATCGCA-- 182
Query 199 CCTCGTTGCAGAGTCTCAAGATCGCCTCCGCTACGAACCCATCTCCGTCGAAAAACAACC 258
|||| | || | | ||||||||||| |||||| ||||||||||| |||||||||
Sbjct 183 CCTC--T-CA-CG--AC-GGATCGCCTCCGTTACGAAGCCATCTCCGTCTCAAAACAACC 235
Query 259 ACCAACCGCAAAT--C-TTGAGCCGTCTCAAGTCTACATCGAGAAACAAAAACCACAAGT 315
||||||| | || | || ||| ||||||| ||||||||||||||||| || ||||
Sbjct 236 ACCAACCTCCGATCCCACGGATCCGGCTCAAGTTTACATCGAGAAACAAAAGTCAAAAGT 295
Query 316 GAGAGACACCGTCTCCAGAATCATCAATCCAACAAGAAAACTCGCCGGATTCGTGGTGGA 375
|||||| | ||| |||||||| | |||||||| |||| |||| ||||||||||||||
Sbjct 296 GAGAGATGCAGTCGCCAGAATCGTTGATCCAACACGAAAGCTCGTTGGATTCGTGGTGGA 355
Query 376 CATGTTCTGTTCTTCAATGATCGATATAGCTAACGAATTTGGAGTTCCTTGTTATATGAT 435
|| || ||||| || ||||| ||| ||||||||||||| |||||||| |||||||||||
Sbjct 356 TATATTTTGTTCCTCGATGATTGATGTAGCTAACGAATTCGGAGTTCCGTGTTATATGAT 415
Query 436 CTACACATCAAACGCTACGTTTTTGGGAATCACACTTCACGTTCAAGAAATGTACGA-CG 494
||||||||| ||||||||| || | ||||||| |||||| ||||| |||||||||| |
Sbjct 416 CTACACATCGAACGCTACGGTTCTAGGAATCATGCTTCACCTTCAACAAATGTACGATC- 474
Query 495 ACAAA-AAGTATGACGTCAGCGATTTGGATGAGTCAGTCAACGAATTGGAGTTTCCTTGT 553
| ||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| | |
Sbjct 475 A-AAAGAAGTATGACGTCAGTGAGTTGGAAGAGTCAGTCAACGAGTTGGAGTTTCCGTCT 533
Query 554 TTGACTCGTCCTTATCCAGTGAAGTGCCTTCCTCATATCCTTAGTTCAAAAGATTGGTTA 613
||| ||||||||||||||||||||| ||||||||| |||| | |||||| || ||||||
Sbjct 534 CTGAGTCGTCCTTATCCAGTGAAGTGTCTTCCTCATTTCCTCACTTCAAAGGAGTGGTTA 593
Query 614 CCtt-tttttGC-AGCTCAAGGTAGGTCTTTCCGGAAGATGAAAGGTATTTTGGTAAATA 671
||| | ||| | ||| |||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 594 -CTTCTCTTT-CTAGCACAAGCCAGGTATTTACGGAAGATGAAAGGTATTTTGGTAAATA 651
Query 672 CAGTTGCTGAGCTTGAGCCTCACGCTTTGAAGATGTTTAACAATGTTGATCTTCCTCAAG 731
|||||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||
Sbjct 652 CAGTTGCTGAGCTTGAACCTTACGCTTTAAAAATGTTTAATAATGTTGATCTTCCTCAAG 711
Query 732 CTTATCCTGTTGGACCAGTGTTGCATCTTGATAACGGCGATGACGACGATGAAAAG-AGA 790
||||||| || |||||||||||||| || | | ||||||||||||||| | |
Sbjct 712 CTTATCCGGTAGGACCAGTGTTGCA--TT--T-----C---GACGACGATGAAAAGCA-A 758
Query 791 TTGGAGGTTTTGCGGTGGCTTGATGATCAACCGCCTAAATCTGTTTTGTTTCTCTGTTTT 850
| ||| |||||| |||||| ||||| |||||||| ||||||||| ||||||||||||||
Sbjct 759 TCAGAGATTTTGCAGTGGCTCGATGAGCAACCGCCGAAATCTGTTGTGTTTCTCTGTTTT 818
Query 851 GGAAGTATGGGAGGTTTCACTGAGGAACAAACTAGAGAGGTAGCTGTGGCG-TTAAACCG 909
||||| |||||||||||||| ||||||||| ||||||| | || | ||| || | ||
Sbjct 819 GGAAGCATGGGAGGTTTCACGGAGGAACAAGCTAGAGAAATGGCCATTGCGCTT-GATCG 877
Query 910 AAGTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGATGGAACG 969
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 878 TAGCGGTTATCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGACCGACCG 937
Query 970 TCCCGGAGATTAT-AAGAATCTT-GAGGAGGTTTTACCGGACGGGTTCTTGGAACGGACT 1027
||| |||||| | | | || || || || ||| | |||| |||||| | || |||||
Sbjct 938 TCCTAGAGATT-TCACGGAT-TTGGATGAAGTTCTCCCGGTGGGGTTCCTAGATCGGACA 995
Query 1028 TTGGATAGAGGGAAAGTGATTGGATGGGCTCCACAAGTGGCGGTGTTAG-AGAAGCCGGC 1086
|||||||||||||| ||| | |||||||| ||||||||||| ||| ||| | || |||||
Sbjct 996 TTGGATAGAGGGAAGGTGGTGGGATGGGCACCACAAGTGGCAGTGCTAGCA-AAACCGGC 1054
Query 1087 GATAGGAGGGTTTGTTACTCATTGTGGGTGGAACTCTATG-TTAGAGAGCTTGTGGTTTG 1145
||||||||| |||||||||||||||||||||||||| ||| || || ||||||||||| |
Sbjct 1055 GATAGGAGGATTTGTTACTCATTGTGGGTGGAACTCGATGCTT-GAAAGCTTGTGGTTCG 1113
Query 1146 GTGTTCCGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAGGTTAACGCGTTTGAGATGG 1205
|||||||||||||||| |||||||| ||||| ||||||||| | ||||||||||||||||
Sbjct 1114 GTGTTCCGATGGTGACATGGCCGCTCTACGCCGAGCAGAAGATAAACGCGTTTGAGATGG 1173
Query 1206 TGGAGGAGCTGGGATTGGCGGTGGAGATACGTAAGTGCATTAGT-GGAGATTTGTTGTTG 1264
|||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
Sbjct 1174 TGGAGGAGCTGGGATTGGCGGTGGAGATACGTAAGTAC-TTAAAAGGAGATTTGTTC--G 1230
Query 1265 ATCGGAGAGATGGAGATAGTGACGGCGGAGGATATAGAGAGAGCTATAAGGTGTGTGATG 1324
|||||||||||||| || ||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1231 C-CGGAGAGATGGAGACGGTTACGGCCGAGGATATAGAGAGAGCTATCAGGCGTGTGATG 1289
Query 1325 GAGCAGGATAGTGATGTAAGGAGTCGAGTGAAGGAGATGGCGGAGAAGTGTCACGTGGCG 1384
|||||||||||||||||||||| | |||||||||| ||||| |||| |||||| ||||||
Sbjct 1290 GAGCAGGATAGTGATGTAAGGAATAGAGTGAAGGAAATGGCTGAGATGTGTCATGTGGCG 1349
Query 1385 TTGATGGACGGTGGATCTTCCAAGACGGCTTTGCAAAAGTTTATTCAAGACGTGATAGAG 1444
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1350 TTAATGGACGGTGGATCTTCCAAGACTGCTTTGCAAAAGTTTATTCAAGACGTGATAGAG 1409
Query 1445 AATGTTGCTTAAATTGGATAGAGAGA 1470
||||||||||||||||||| ||||||
Sbjct 1410 AATGTTGCTTAAATTGGATTGAGAGA 1435
> Ahg493362 jgi|Araly1|493362|fgenesh2_kg.7__2795__AT4G15260.1
Length=1550
Score = 1061 bits (574), Expect = 0.0
Identities = 771/861 (90%), Gaps = 33/861 (4%)
Strand=Plus/Plus
Query 792 TGGAGGTTTTGCGGTGGCTTGATGATCAACCGCCTAAATCTGTTTTGTTTCTCTGTTTTG 851
||||| ||||||||||||| ||||| |||||||| ||||||||| ||||||| || ||||
Sbjct 720 TGGAGATTTTGCGGTGGCTCGATGAGCAACCGCCGAAATCTGTTGTGTTTCTTTGCTTTG 779
Query 852 GAAGTATGGGAGGTTTCACTGAGGAACAAACTAGAGAGGTAGCTGTGGCGTTAAACCGAA 911
|||| |||||||||||||||||||| |||||||||||||||||||| |||||| | ||||
Sbjct 780 GAAGCATGGGAGGTTTCACTGAGGAGCAAACTAGAGAGGTAGCTGTAGCGTTAGATCGAA 839
Query 912 GTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGATGGAACGTC 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAATATAATGATGGAACGTC 899
Query 972 CCGGAGATTATAAGAATCTTGAGGAGGTTTTACCGGACGGGTTCTTGGAACGGACTTTGG 1031
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| | ||
Sbjct 900 CCGGAGATTATACGAATCTTGAGGAGGTTTTACCGGAGGGGTTCTTGGAGCGGACGTCGG 959
Query 1032 ATAGAGGGAAAGTGATTGGATGGGCTCCACAAGTGGCGGTGTTAGAGAAGCCGGCGATAG 1091
|||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 960 ATAGAGGGAAAGTGATCGGATGGGCACCACAAGTGGCGGTGCTAGAGAAACCGGCGATAG 1019
Query 1092 GAGGGTTTGTTACTCATTGTGGGTGGAACTCTATGTTAGAGAGCTTGTGGTTTGGTGTTC 1151
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 1020 GAGGGTTTGTTACTCATTGTGGTTGGAACTCGATGCTAGAGAGCTTGTGGTTTGGTGTTC 1079
Query 1152 CGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAGGTTAACGCGTTTGAGATGGTGGAGG 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAGGTTAACGCGTTTGAGATGGTGGAGG 1139
Query 1212 AGCTGGGATTGGCGGTGGAGATACGTAAGTGCATTAGTGGAGATTTGTTGTTGATCGGAG 1271
|| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 AGTTGGGGTTGGCGGTGGAGATACGTAAGTGCATTAGAGGAGATTTGTTGTTGATCGGAG 1199
Query 1272 AGATGGAGATAGTGACGGCGGAGGATATAGAGAGAGCTATAAGGTGTGTGATGGAGCAGG 1331
| ||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1200 AAATGGAGACGGTTACGGCGGAGGATATAGAGAGAGCTATCAGGCGTGTGATGGAGCAGG 1259
Query 1332 ATAGTGATGTAAGGAGTCGAGTGAAGGAGATGGCGGAGAAGTGTCACGTGGCGTTGATGG 1391
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 ATAGTGATGTAAGGAGTAGAGTGAAGGAGATGGCGGAGAAGTGTCACGTGGCGTTAATGG 1319
Query 1392 ACGGTGGATCTTCCAAGACGGCTTTGCAAAAGTTTATTCAAGACGTGATAGAGAATGTTG 1451
||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 1320 ACGGTGGATCTTCGAAGACGGCTTTGGAAAAGTTTATTGAAGACGTGATAGAGAATGTGG 1379
Query 1452 CTTAAATTGGATAGAGAGACTCGCATGGAATTCCAGACTCGCATGTTGAGAGTTCACTAT 1511
|||||||||||| |||||| ||| | | | | |||||||| ||| |||||
Sbjct 1380 ATTAAATTGGATAAAGAGAC--GCAC----T-C-A--C----ATGTTGAGTGTTGACTAT 1425
Query 1512 GAGATCGATGACTCAGGTCCATGTGTTATTATGTATGTTATGTCGttttcgtttttcttt 1571
||||| |||||||| ||||||||| | |||| || | ||||||| ||||| |||
Sbjct 1426 GAGATAGATGACTCCGGTCCATGT---A--ATGTC-GTC-T-TCGTTTT--TTTTT-TTT 1474
Query 1572 ttttgttggaatttgtatacgt--tgtgtacttgtgtttgtgtgtc-tttttaaaatgtt 1628
| ||||||||||||| |||| ||||| |||||| | | | | ||||| |||| ||
Sbjct 1475 T---GTTGGAATTTGTAGACGTACTGTGT--TTGTGTGTCTTTTTAATTTTTTAAATCTT 1529
Query 1629 tACGTAATAAAATGTGATACA 1649
|| ||||||||||||||||||
Sbjct 1530 TATGTAATAAAATGTGATACA 1550
Score = 965 bits (522), Expect = 0.0
Identities = 672/741 (91%), Gaps = 23/741 (3%)
Strand=Plus/Plus
Query 21 AAAAACAGAAATGAAGAAGATTGAGCTCGTGTTCATACCTTCGCCGGGAATCGGCCATCT 80
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAAAACAGAAATGAAGATGATTGAGCTCGTGTTCATACCTTCGCCGGGAATTGGCCATCT 60
Query 81 CCGGCCAACCGTGAAGCTAGCAAAGCAACTCATCGGAAGCGAAGAACATTTTTTCAATCA 140
||||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 CCGGCCAACCGTGAAGCTAGCAAAGCAACTCAT-------------C------TCAATCA 101
Query 141 CCGTAATCATCATCCCTTCTAGAAACGACGCCGGTGATGCAACCGCCTATATCGCATCCC 200
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CCGTAATCATCATCCCTTCCAGAAACGACGCCGGTGATGCAACCGCCTATATCGCATCCC 161
Query 201 TCGTTG-CAGAGTCTCAAGATCGCCTCCGCTACGAACCCATCTCCGTCGAAAAACAACCA 259
|| | |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||
Sbjct 162 TC-ACGACAGAGTCTCAAGATCGTCTCCGTTACGAACCCATCTCCGTCGTAAAAGAACCA 220
Query 260 CCAACCGCAAATCTTGAGCCGTCTCAAGTCTACATCGAGAAACAAAAACCACAAGTGAGA 319
|||||||| ||||| || || |||||||||||||||||||||||||||||| ||||||||
Sbjct 221 CCAACCGCCAATCTAGAACCATCTCAAGTCTACATCGAGAAACAAAAACCAAAAGTGAGA 280
Query 320 GACACCGTCTCCAGAATCATCAATCCAACAAGAAAACTCGCCGGATTCGTGGTGGACATG 379
||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 281 GACACAATCTCCAGAATCATCAATCCAACACGAAAACTCGCTGGATTCGTGGTGGACATG 340
Query 380 TTCTGTTCTTCAATGATCGATATAGCTAACGAATTTGGAGTTCCTTGTTATATGATCTAC 439
|||||||| || ||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 341 TTCTGTTCCTCGATGATCGATGTAGCTAACGAATTCGGAGTTCCGTGTTATATGATCTAC 400
Query 440 ACATCAAACGCTACGTTTTTGGGAATCACACTTCACGTTCAAGAAATGTACGACGACAA- 498
||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 401 ACATCAAACGCGACGTTTCTGGGAATCACACTTCACGTTCAACAAATGTACGACGACAAG 460
Query 499 AAAGTATGACGTCAGCGATTTGGATGAGTCAGTCAACGAATTGGAGTTTCCTTGTTTGAC 558
||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 461 AAA-TGTGACGTCAGCGATTTGGATGAGTCAGTCAACGAATTGGAGTTTCCGTGTTTGAC 519
Query 559 TCGTCCTTATCCAGTGAAGTGCCTTCCTCATATCCTTAGTTCAAAAGATTGGTTACCttt 618
||||||||||||||||||||| |||||||||||||| | |||||| || |||||||| ||
Sbjct 520 TCGTCCTTATCCAGTGAAGTGTCTTCCTCATATCCTCACTTCAAAGGAGTGGTTACCATT 579
Query 619 ttttGCAGCTCAAGGTAGGTCTTTCCGGAAGATGAAAGGTATTTTGGTAAATACAGTTGC 678
|||| |||||||| ||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 580 CTTTGTAGCTCAAGCTAGATTTTTCCGGAAGATGAAGGGTATTTTGGTAAATACAGTTGC 639
Query 679 TGAGCTTGAGCCTCACGCTTTGAAGATGTTTAACAATGTTGATCTTCCTCAAGCTTATCC 738
|||||| || ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 640 TGAGCTAGAACCTCACGCTTTAAAAATGTTTAATAATGTTGATCTTCCTCAAGCTTATCC 699
Query 739 TGTTGGACCAGTGTTGCATCT 759
| |||||||||||||||||||
Sbjct 700 TATTGGACCAGTGTTGCATCT 720
> Ahg333019 jgi|Araly1|333019|fgenesh1_pm.C_scaffold_9000047
Length=1389
Score = 741 bits (401), Expect = 0.0
Identities = 756/919 (82%), Gaps = 58/919 (6%)
Strand=Plus/Plus
Query 542 GAGTTTCCTTGTTTGACTCGTCCTTATCCAGTGAAGTGCCTTCCTCATATC-CTT-AGTT 599
|||||||| |||||||||||||||||||| ||||||| || ||| |||| ||| | ||
Sbjct 484 GAGTTTCCGTGTTTGACTCGTCCTTATCCTGTGAAGTTACTGCCT--TATCTCTTCACTT 541
Query 600 CAAAAGATTGGTTACCttt-ttttGCAGCTCAAGGTAGGTCTTTCCGGAAGATGAAAGGT 658
||||| | ||| ||||||| |||| |||||||| ||| |||| |||||||| |||
Sbjct 542 CAAAACAGTGGCTACCTTTGTTTT-TAGCTCAAGCTAGAAAACTCCGAAAGATGAAGGGT 600
Query 659 ATTTTGGTAAATACAGTTGCTGAGCTTGAGCCTCACGCTTTGAAGATGTTTAACAA---T 715
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 601 ATTTTGGTAAATACAGTTGCTGAGCTTGAGCCACACGCTTTGAAAATGTTCAACAATGTT 660
Query 716 -GT--TGATCTTCCTCAAGCTTATCCTGTTGGACCAGTGTTGCATCTTGATAACGGCGAT 772
|| |||||||||||||| |||||| | |||||||| ||||||| | |||
Sbjct 661 GGTGGTGATCTTCCTCAAGTTTATCCAATAGGACCAGTTTTGCATC----T-----CGA- 710
Query 773 GACGACGATGAAAAG-AGATTGGAGGTTTTGCGGTGGCTTGATGATCAACCGCCTAAATC 831
| ||||| | ||| | || |||| ||||||||||||| ||||| |||||| |||||||
Sbjct 711 -A-GACGA-G--AAGCA-ATCGGAGATTTTGCGGTGGCTCGATGAGCAACCGGCTAAATC 764
Query 832 TGTTTTGTTTCTCTGTTTTGGAAGTATGGGAGGTTTCACTGAGGAACAAACTAGAGAGGT 891
|||| |||| ||||||||||| || ||||||||||| | |||||||||||| | ||| |
Sbjct 765 TGTTGTGTTCCTCTGTTTTGGGAGCATGGGAGGTTTTAATGAGGAACAAACAAAAGAAAT 824
Query 892 AGCTGTGGCGTTA-AACCGAAGTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGC 950
|| || ||| || || ||||| ||| ||||||||||||||||||||||||| ||||| |
Sbjct 825 CGCCGTCGCGCTAGAA-CGAAGCGGTTACCGGTTTCTTTGGTCTCTCCGTCGCGCATCAC 883
Query 951 CGAATATAATGATGGAACGTCCCGGAGATTAT-A-AGAATCTTGAGGAGGTTTTACCGGA 1008
|||||||||| |||||||||||||||||| | | | || || ||||| ||| | |||||
Sbjct 884 GGAATATAATGGTGGAACGTCCCGGAGATT-TCACA-AACCTAGAGGAAGTTCTCCCGGA 941
Query 1009 CGGG-TTCTTGGAA-CGGACTTTGGATAGAGGGAAAGTGATTGGATGGGCTCCACAAGTG 1066
||| ||| | || || || | ||||| |||||| || || |||||||| || ||||||
Sbjct 942 -GGGTTTCCT-AAATCGTACATCGGATAAAGGGAAGGTAATCGGATGGGCACCGCAAGTG 999
Query 1067 GCGGTGTTAGAGAAGCCGGCGATAGGAGGGTTTGTTACTCATTGTGGGTGGAACTCTATG 1126
|||||| ||| ||| ||||||| |||||| || || |||||||| ||||||||||| |||
Sbjct 1000 GCGGTGCTAGCGAAACCGGCGACAGGAGGATTCGTCACTCATTGCGGGTGGAACTCGATG 1059
Query 1127 TTAGAGAGCTTGTGGTTTGGTGTTCCGATGGTGACGTGGCCGCTTTACGCGGAGCAGAAG 1186
||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct 1060 TTAGAGAGCTTGTGGTTTGGTGTTCCGATGGTGGCGTGGCCGCTTTACTCCGAGCAAAAG 1119
Query 1187 GTTAACGCGTTT-GAGATGGTGGAGGAGCTGGGATTGGCGGTGGAGATACGTAAGTGCAT 1245
|| ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 1120 GTAAACGC-TTTCGAGATGGTGGAGGAGCTAGGATTGGCGGTGGAGATACGGAAGT--AT 1176
Query 1246 T-AGT-GGAGATTTGTTGTTGATCGGAGAGATGGAGATAGTGACGGCGGAGGATATAGAG 1303
| | ||||| |||||| | |||||||||||||| || ||||||||||| ||||||
Sbjct 1177 TTAAAAGGAGAGTTGTTG--GC-CGGAGAGATGGAGACGGTCACGGCGGAGGAGATAGAG 1233
Query 1304 AGAGCTAT-AAGGTGTGTGATGGA-GCAGGATAGTGATGTAAG-GAGTCGAGTGAAGGAG 1360
||||| || ||| |||||||||| | ||||| |||| || || || | |||||||||||
Sbjct 1234 AGAGCGATGAAGC-GTGTGATGGAAG-AGGATTGTGACGTTAGAGA-TAGAGTGAAGGAG 1290
Query 1361 ATGGCGGAGAAGTGTC-ACGTGGCGTTGATGGACGGTGGATCTTC-CAAGACGGCTTTGC 1418
||||| |||||| || || ||||||| ||||| ||||||||||| || | ||||||||
Sbjct 1291 ATGGCAAAGAAGT-TCCACTTGGCGTTAATGGAAGGTGGATCTTCACATGT-GGCTTTGC 1348
Query 1419 AAAAGTTTATTCAAGACGT 1437
|||||||||| ||||||||
Sbjct 1349 AAAAGTTTATGCAAGACGT 1367
> Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1
Length=1395
Score = 448 bits (242), Expect = 8e-125
Identities = 406/484 (84%), Gaps = 15/484 (3%)
Strand=Plus/Plus
Query 666 TAAATACAGTTGCTGAGCTTGAGCCTCACGCTTTGAAGATGTTTAACAAT-GT--TGATC 722
||||||||||||||||||| || ||||| ||| |||| |||||||||||| || ||||
Sbjct 554 TAAATACAGTTGCTGAGCTCGAACCTCAAGCTGTGAAAATGTTTAACAATGGTGACGATC 613
Query 723 TTCCTCAAGCTTATCCTGTTGGACCAGTGTTGCATCTTGATAACGGCGATGACGACGATG 782
||||||||| ||||||||||||||||||||||||||| || || | |||||||| ||
Sbjct 614 TTCCTCAAGTTTATCCTGTTGGACCAGTGTTGCATCTCGAAAAAACCTTTGACGACGTTG 673
Query 783 -AAAAGAGATTGGAGGTTTTGCGGTGGCTTGATGATCAACCGCCTAAATCTGTTTTGTTT 841
|||| | || ||| ||||||||||||||||||| |||||||| ||||| ||| ||||
Sbjct 674 AAAAACA-ATCGGATATTTTGCGGTGGCTTGATGAGCAACCGCCAAAATCGGTTGTGTTC 732
Query 842 CTCTGTTTTGGAAGTATGGGAGGTTTCACTGAGGAACAAACTA-GAGAGGTAGCTGTGGC 900
|| || ||||| ||||||||||| |||| |||||||||||| | ||||| | || || ||
Sbjct 733 CTTTGCTTTGGGAGTATGGGAGGCTTCAATGAGGAACAAAC-ACGAGAGATTGCCGTCGC 791
Query 901 GTTAAACCGAAGTGGTCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCGCCGAA-TATAA 959
|||| | ||| |||| |||||||||| ||||| ||||| || |||||||| || | |
Sbjct 792 GTTAGATAGAAATGGTTACCGGTTTCTCTGGTCCCTCCGCCGGGCATCGCCAAACT-TTT 850
Query 960 TGATGGAACGTCCCGGAGATTATAAGAATCTT-GAGGAGGTTTTACCGGACGGG-TTCTT 1017
||| ||| ||||| |||||||||| |||| || ||||||||| ||||||| ||| ||| |
Sbjct 851 TGACGGAGCGTCCTGGAGATTATACGAAT-TTAGAGGAGGTTCTACCGGA-GGGATTCCT 908
Query 1018 GGAACGGACTTTGGATAGAGGGAAAG-TGATTGGATGGGCTCCACAAGTGGCGGTGTTAG 1076
|| ||||| |||||||||||| ||| | || |||||||||||||||||||||||| |||
Sbjct 909 AGATCGGACATTGGATAGAGGG-AAGATAATCGGATGGGCTCCACAAGTGGCGGTGCTAG 967
Query 1077 AGAAGCCGGCGATAGGAGGGTTTGTTACTCATTGTGGGTGGAACTCTATGTTAGAGAGCT 1136
| ||||||||||||||||||||||||||||| || || |||||||| ||| |||||||||
Sbjct 968 AAAAGCCGGCGATAGGAGGGTTTGTTACTCACTGCGGTTGGAACTCGATGCTAGAGAGCT 1027
Query 1137 TGTG 1140
||||
Sbjct 1028 TGTG 1031
Score = 409 bits (221), Expect = 4e-113
Identities = 451/559 (81%), Gaps = 28/559 (5%)
Strand=Plus/Plus
Query 36 GAAGATTGAGCTCGTGTTCATACCTTCGCCGGGAATCGGCCATCTCCGGCCAACCGT-GA 94
||||| |||||| ||||||||||| ||||| |||||||| |||||| || ||||||| |
Sbjct 3 GAAGAATGAGCTTGTGTTCATACCGTCGCCAGGAATCGGTCATCTCAGGTCAACCGTCG- 61
Query 95 AGCTAGCAAAGCAACTCATCGGAAGCGAAGAACATTTTTTCAATCACCGTAATCATCATC 154
||||||| |||| |||| |||| ||| || || |||| ||||||||||||||||||
Sbjct 62 AGCTAGCGAAGCGACTCGTCGGCAGC-AATTACCGCCTTTCGATCACCGTAATCATCATC 120
Query 155 CCTT---CTAGAAACGACGCCGGTGATGCAACCGCCTATATCGCATCCCTCGTTG-CAGA 210
|||| |||| |||||| | |||| |||| ||||||| ||||||||| | | |
Sbjct 121 CCTTACCCTAGCGACGACGACAGTGA---AACCACCTATATAGCATCCCTC-ACGACCGC 176
Query 211 GTCTCAAGATCGCCTCCGCTACGAACCCATCTCCGTCGAAAAACAACCACCAACCGCAAA 270
|||||||| ||| ||| ||||||| |||||||||||| | | | | ||||||||| |
Sbjct 177 GTCTCAAGGTCGTCTCAACTACGAAGCCATCTCCGTCGCATATC-A--ACCAACCGCCGA 233
Query 271 TCTTGAGCCGTC-TCAAGTCTACATCGAGAAACAAAAACCACAAGTGAGAGACACCGTCT 329
|| ||||| | |||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 234 TCCAGAGCC-ACTTCAAGTATACATCGAGAAACAAAAGCCGCAAGTGAGAGATGTGGTCG 292
Query 330 CCAGAATCATCAATCCAACAAGA----A------A--ACTCGCCGGATTCGTGGTGGACA 377
| |||||| | || |||||||| | | ||| |||||||||| |||||||
Sbjct 293 CGAGAATCTTTGATTCAACAAGAGTTGACTCGCGACGACTATCCGGATTCGTCGTGGACA 352
Query 378 TGTTCTGTTCTTCAATGATCGATATAGCTAACGAATTTGGAGTTCCTTGTTATATGATCT 437
|||||||||| || ||||||||| ||||||||||||| | |||||| ||||||||| | |
Sbjct 353 TGTTCTGTTCCTCGATGATCGATGTAGCTAACGAATTCGAAGTTCCGTGTTATATGGTAT 412
Query 438 ACACATCAAACGCTACGTTTTTGGGAATCACACTTCACGTTCAAGAAATGTACGACGACA 497
||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| |
Sbjct 413 ACACATCAAACGCTACGTTTTTGGGAATCTCGTTTCACCTTCAACAAATGTACGACGAGA 472
Query 498 AAAAGTATGACGTCAGCGATTTGGATGAGTCAGTCAACGAATTGGAGTTTCCTTGTTTGA 557
| ||||||||||||||||| ||||| || || |||||||| ||||||||||| |||||||
Sbjct 473 AGAAGTATGACGTCAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATGTTTGA 532
Query 558 CTCGTCCTTATCCAGTGAA 576
|||||||||| || |||||
Sbjct 533 CTCGTCCTTACCCTGTGAA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61896648125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5