BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15270.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1 717 0.0
Ahg946800 jgi|Araly1|946800|scaffold_703029.1 311 8e-84
> Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1
Length=1395
Score = 717 bits (388), Expect = 0.0
Identities = 507/563 (90%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 1 ATGAA-AATTCAGCTTGTGTTCATACCATCGCCTGGAATAGGTCATCTCAGGTCAACCGT 59
||||| || | |||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGAAGAA-TGAGCTTGTGTTCATACCGTCGCCAGGAATCGGTCATCTCAGGTCAACCGT 59
Query 60 TGAGTTAGCAAAGCGACTCGTCCGCAGCGATGACCGCCTTTGGATCACCGTAATCATCAT 119
||| |||| |||||||||||| ||||| || ||||||||| ||||||||||||||||||
Sbjct 60 CGAGCTAGCGAAGCGACTCGTCGGCAGCAATTACCGCCTTTCGATCACCGTAATCATCAT 119
Query 120 CCCTTACCCTTCCATTAGCGACGACGAC-GTTGAAACCACCTATATAGCATCTCTCACGA 178
|||||| | || ||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 120 CCCTTA--C--CC--TAGCGACGACGACAG-TGAAACCACCTATATAGCATCCCTCACGA 172
Query 179 CCGCATCTCAAGATCGTCTCAACTACGAAGCCATCTCCGTCGCAAATCAACCAACCGACT 238
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 173 CCGCGTCTCAAGGTCGTCTCAACTACGAAGCCATCTCCGTCGCATATCAACCAACCGCCG 232
Query 239 ATCAAGAGCCAAC-TCAAGTCTACATCGAGAAACAAAAGCCTCAAGTTAGAGATGTTGTC 297
||| |||||| || |||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct 233 ATCCAGAGCC-ACTTCAAGTATACATCGAGAAACAAAAGCCGCAAGTGAGAGATGTGGTC 291
Query 298 GCGAGAATCTTCCATTCAACAGGAGTTGACTCGCCG-CGAGTAGCCGGATTCGTGGTGGA 356
||||||||||| |||||||| ||||||||||| || ||| || |||||||||| |||||
Sbjct 292 GCGAGAATCTTTGATTCAACAAGAGTTGACTCG-CGACGACTATCCGGATTCGTCGTGGA 350
Query 357 CATGTTCTGTTCATCGATGATCGATGTAGTTAACGAATTTGGAGTTCCGTGTTATATGGT 416
|||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 351 CATGTTCTGTTCCTCGATGATCGATGTAGCTAACGAATTCGAAGTTCCGTGTTATATGGT 410
Query 417 ATACACATCAAACGCTACGTGTTTGGGAATCACACTTCATATTCAACGAATGTTCGACGA 476
|||||||||||||||||||| |||||||||| | |||| |||||| ||||| ||||||
Sbjct 411 ATACACATCAAACGCTACGTTTTTGGGAATCTCGTTTCACCTTCAACAAATGTACGACGA 470
Query 477 GAAGAAGTATGACGTAAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATTTTT 536
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 GAAGAAGTATGACGTCAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATGTTT 530
Query 537 GACTCGTCCTTACCCTGTGAAAT 559
|||||||||||||||||||||||
Sbjct 531 GACTCGTCCTTACCCTGTGAAAT 553
Score = 363 bits (196), Expect = 2e-99
Identities = 314/367 (86%), Gaps = 23/367 (6%)
Strand=Plus/Plus
Query 726 CTTT-AGAGGAGATATGTTGGTCGGAGGGATGGAGATAGTCACGACGGTGGATATAGAGA 784
|||| ||||||||| |||||| ||||| ||||||||||| |||| ||| |||||||||||
Sbjct 1034 CTTTAAGAGGAGATTTGTTGGCCGGAGAGATGGAGATAGCCACGGCGGAGGATATAGAGA 1093
Query 785 GAGCGGTCAGGTGTGTGATGGAGAATGATAGTGAGGTTAGGAATAGAGTGAAGGAGATGG 844
||||| | || ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1094 GAGCGATTGGGCGTGTGATGGAGCAGGATAGTGAGGTTAGGAATAGAGTGAAGGAGATGG 1153
Query 845 CTGAGAAGTGTCACGTGGCGTCGATGGACGGTGGATCCTCGCAGGTGGCTTTGCAAAAGT 904
||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| ||
Sbjct 1154 CTGAGAAGTGTCACGGGGCGTTAATGGACGGTGGATCTTCACAGGTTGCTTTGCAAACGT 1213
Query 905 TTATTCAAGACGTGACAGAGAATGTTGTCTGATGGTAGGAAGATGGAAAA-T-CACAGG- 961
||||||||||||||||||||||||| || |||||||||| || ||||| | | |||
Sbjct 1214 TTATTCAAGACGTGACAGAGAATGTGGTTTGATGGTAGG--GA--GAAAACTAGAAAGGA 1269
Query 962 TTGA-CTCTGAGATACGAGTGACTGTTTATG--TA----TGTCATGTCAC--AAAATTTC 1012
||| || |||||||||| ||||||| |||| || ||||||||||| || |||||
Sbjct 1270 GTGACCTATGAGATACGA-TGACTGTGTATGTTTAGGTCTGTCATGTCACGTAACATTTC 1328
Query 1013 ATGAATTTGTCCC---ATA--ATACTACGATAGGTGTATGTGTGTTTTTCTTGGGGTCAA 1067
||||||||||||| ||| ||| || |||||||| |||||||||||||||||||||||
Sbjct 1329 ATGAATTTGTCCCGTAATACTATAATAAGATAGGTGGATGTGTGTTTTTCTTGGGGTCAA 1388
Query 1068 ACTATGT 1074
|||||||
Sbjct 1389 ACTATGT 1395
> Ahg946800 jgi|Araly1|946800|scaffold_703029.1
Length=1442
Score = 311 bits (168), Expect = 8e-84
Identities = 254/296 (86%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 638 TGGTGACGTGGCCGCTTTACGCAGAGCAGAAGATAAGCGCCTTTGCGATGGTGGAGGAGT 697
||||||| |||||||| ||||| ||||||||||||| ||| |||| |||||||||||||
Sbjct 1123 TGGTGACATGGCCGCTCTACGCCGAGCAGAAGATAAACGCGTTTGAGATGGTGGAGGAGC 1182
Query 698 TGGGATTGGCGGTTCAGATACGGAAGTTCTTTAGAGGAGATATGTTGGTCGGAGGGATGG 757
||||||||||||| ||||||| |||| ||| | ||||||| |||| | ||||| |||||
Sbjct 1183 TGGGATTGGCGGTGGAGATACGTAAGTACTTAAAAGGAGATTTGTTCGCCGGAGAGATGG 1242
Query 758 AGATAGTCACGACGGTGGATATAGAGAGAGCGGTCAGGTGTGTGATGGAGAATGATAGTG 817
||| || ||| | | ||||||||||||||| ||||| ||||||||||| | |||||||
Sbjct 1243 AGACGGTTACGGCCGAGGATATAGAGAGAGCTATCAGGCGTGTGATGGAGCAGGATAGTG 1302
Query 818 AGGTTAGGAATAGAGTGAAGGAGATGGCTGAGAAGTGTCACGTGGCGTCGATGGACGGTG 877
| || ||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||
Sbjct 1303 ATGTAAGGAATAGAGTGAAGGAAATGGCTGAGATGTGTCATGTGGCGTTAATGGACGGTG 1362
Query 878 GATCCTCGC-AG-GTGGCTTTGCAAAAGTTTATTCAAGACGTGACAGAGAATGTTG 931
|||| || | || | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1363 GATCTTC-CAAGACT-GCTTTGCAAAAGTTTATTCAAGACGTGATAGAGAATGTTG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5