BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15270.1 Length=1138 Score E Sequences producing significant alignments: (Bits) Value Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1 717 0.0 Ahg946800 jgi|Araly1|946800|scaffold_703029.1 311 8e-84 > Ahg493361 jgi|Araly1|493361|fgenesh2_kg.7__2794__AT4G15270.1 Length=1395 Score = 717 bits (388), Expect = 0.0 Identities = 507/563 (90%), Gaps = 14/563 (2%) Strand=Plus/Plus Query 1 ATGAA-AATTCAGCTTGTGTTCATACCATCGCCTGGAATAGGTCATCTCAGGTCAACCGT 59 ||||| || | |||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 1 ATGAAGAA-TGAGCTTGTGTTCATACCGTCGCCAGGAATCGGTCATCTCAGGTCAACCGT 59 Query 60 TGAGTTAGCAAAGCGACTCGTCCGCAGCGATGACCGCCTTTGGATCACCGTAATCATCAT 119 ||| |||| |||||||||||| ||||| || ||||||||| |||||||||||||||||| Sbjct 60 CGAGCTAGCGAAGCGACTCGTCGGCAGCAATTACCGCCTTTCGATCACCGTAATCATCAT 119 Query 120 CCCTTACCCTTCCATTAGCGACGACGAC-GTTGAAACCACCTATATAGCATCTCTCACGA 178 |||||| | || ||||||||||||| | ||||||||||||||||||||| ||||||| Sbjct 120 CCCTTA--C--CC--TAGCGACGACGACAG-TGAAACCACCTATATAGCATCCCTCACGA 172 Query 179 CCGCATCTCAAGATCGTCTCAACTACGAAGCCATCTCCGTCGCAAATCAACCAACCGACT 238 |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 173 CCGCGTCTCAAGGTCGTCTCAACTACGAAGCCATCTCCGTCGCATATCAACCAACCGCCG 232 Query 239 ATCAAGAGCCAAC-TCAAGTCTACATCGAGAAACAAAAGCCTCAAGTTAGAGATGTTGTC 297 ||| |||||| || |||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct 233 ATCCAGAGCC-ACTTCAAGTATACATCGAGAAACAAAAGCCGCAAGTGAGAGATGTGGTC 291 Query 298 GCGAGAATCTTCCATTCAACAGGAGTTGACTCGCCG-CGAGTAGCCGGATTCGTGGTGGA 356 ||||||||||| |||||||| ||||||||||| || ||| || |||||||||| ||||| Sbjct 292 GCGAGAATCTTTGATTCAACAAGAGTTGACTCG-CGACGACTATCCGGATTCGTCGTGGA 350 Query 357 CATGTTCTGTTCATCGATGATCGATGTAGTTAACGAATTTGGAGTTCCGTGTTATATGGT 416 |||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct 351 CATGTTCTGTTCCTCGATGATCGATGTAGCTAACGAATTCGAAGTTCCGTGTTATATGGT 410 Query 417 ATACACATCAAACGCTACGTGTTTGGGAATCACACTTCATATTCAACGAATGTTCGACGA 476 |||||||||||||||||||| |||||||||| | |||| |||||| ||||| |||||| Sbjct 411 ATACACATCAAACGCTACGTTTTTGGGAATCTCGTTTCACCTTCAACAAATGTACGACGA 470 Query 477 GAAGAAGTATGACGTAAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATTTTT 536 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 471 GAAGAAGTATGACGTCAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATGTTT 530 Query 537 GACTCGTCCTTACCCTGTGAAAT 559 ||||||||||||||||||||||| Sbjct 531 GACTCGTCCTTACCCTGTGAAAT 553 Score = 363 bits (196), Expect = 2e-99 Identities = 314/367 (86%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 726 CTTT-AGAGGAGATATGTTGGTCGGAGGGATGGAGATAGTCACGACGGTGGATATAGAGA 784 |||| ||||||||| |||||| ||||| ||||||||||| |||| ||| ||||||||||| Sbjct 1034 CTTTAAGAGGAGATTTGTTGGCCGGAGAGATGGAGATAGCCACGGCGGAGGATATAGAGA 1093 Query 785 GAGCGGTCAGGTGTGTGATGGAGAATGATAGTGAGGTTAGGAATAGAGTGAAGGAGATGG 844 ||||| | || ||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1094 GAGCGATTGGGCGTGTGATGGAGCAGGATAGTGAGGTTAGGAATAGAGTGAAGGAGATGG 1153 Query 845 CTGAGAAGTGTCACGTGGCGTCGATGGACGGTGGATCCTCGCAGGTGGCTTTGCAAAAGT 904 ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| || Sbjct 1154 CTGAGAAGTGTCACGGGGCGTTAATGGACGGTGGATCTTCACAGGTTGCTTTGCAAACGT 1213 Query 905 TTATTCAAGACGTGACAGAGAATGTTGTCTGATGGTAGGAAGATGGAAAA-T-CACAGG- 961 ||||||||||||||||||||||||| || |||||||||| || ||||| | | ||| Sbjct 1214 TTATTCAAGACGTGACAGAGAATGTGGTTTGATGGTAGG--GA--GAAAACTAGAAAGGA 1269 Query 962 TTGA-CTCTGAGATACGAGTGACTGTTTATG--TA----TGTCATGTCAC--AAAATTTC 1012 ||| || |||||||||| ||||||| |||| || ||||||||||| || ||||| Sbjct 1270 GTGACCTATGAGATACGA-TGACTGTGTATGTTTAGGTCTGTCATGTCACGTAACATTTC 1328 Query 1013 ATGAATTTGTCCC---ATA--ATACTACGATAGGTGTATGTGTGTTTTTCTTGGGGTCAA 1067 ||||||||||||| ||| ||| || |||||||| ||||||||||||||||||||||| Sbjct 1329 ATGAATTTGTCCCGTAATACTATAATAAGATAGGTGGATGTGTGTTTTTCTTGGGGTCAA 1388 Query 1068 ACTATGT 1074 ||||||| Sbjct 1389 ACTATGT 1395 > Ahg946800 jgi|Araly1|946800|scaffold_703029.1 Length=1442 Score = 311 bits (168), Expect = 8e-84 Identities = 254/296 (86%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 638 TGGTGACGTGGCCGCTTTACGCAGAGCAGAAGATAAGCGCCTTTGCGATGGTGGAGGAGT 697 ||||||| |||||||| ||||| ||||||||||||| ||| |||| ||||||||||||| Sbjct 1123 TGGTGACATGGCCGCTCTACGCCGAGCAGAAGATAAACGCGTTTGAGATGGTGGAGGAGC 1182 Query 698 TGGGATTGGCGGTTCAGATACGGAAGTTCTTTAGAGGAGATATGTTGGTCGGAGGGATGG 757 ||||||||||||| ||||||| |||| ||| | ||||||| |||| | ||||| ||||| Sbjct 1183 TGGGATTGGCGGTGGAGATACGTAAGTACTTAAAAGGAGATTTGTTCGCCGGAGAGATGG 1242 Query 758 AGATAGTCACGACGGTGGATATAGAGAGAGCGGTCAGGTGTGTGATGGAGAATGATAGTG 817 ||| || ||| | | ||||||||||||||| ||||| ||||||||||| | ||||||| Sbjct 1243 AGACGGTTACGGCCGAGGATATAGAGAGAGCTATCAGGCGTGTGATGGAGCAGGATAGTG 1302 Query 818 AGGTTAGGAATAGAGTGAAGGAGATGGCTGAGAAGTGTCACGTGGCGTCGATGGACGGTG 877 | || ||||||||||||||||| |||||||||| |||||| ||||||| |||||||||| Sbjct 1303 ATGTAAGGAATAGAGTGAAGGAAATGGCTGAGATGTGTCATGTGGCGTTAATGGACGGTG 1362 Query 878 GATCCTCGC-AG-GTGGCTTTGCAAAAGTTTATTCAAGACGTGACAGAGAATGTTG 931 |||| || | || | |||||||||||||||||||||||||||| ||||||||||| Sbjct 1363 GATCTTC-CAAGACT-GCTTTGCAAAAGTTTATTCAAGACGTGATAGAGAATGTTG 1416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42430806621 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5