BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15310.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355248 jgi|Araly1|355248|fgenesh1_pg.C_scaffold_7002421 481 7e-135
Ahg946789 jgi|Araly1|946789|scaffold_703018.1 257 1e-67
> Ahg355248 jgi|Araly1|355248|fgenesh1_pg.C_scaffold_7002421
Length=642
Score = 481 bits (260), Expect = 7e-135
Identities = 336/370 (91%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 566 TGGGTGAAACGGAATCCGAGGCCGTAAAAGAACTCGGGTTATGCTGGAGTGCTTTCCGAA 625
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 5 TGGGTGAAACGGAATCCGAGGCCGTAAAAGAACTCGGGTTATGCTGGAATGCTTTCCGAT 64
Query 626 CCAGTTGGTTTCAGTTTTCTTACAACATTCCTGGAACAACTGTTTATCGACTCGTGAAGG 685
|||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 65 CCAGTTGGTTTCAGTTCTCTTACAACATTCCTGGGACAACTGTTTATCGATTCGT----- 119
Query 686 CTCGGAGGAAGGCTGCGAAGCTGCTAAAGGCCTTGATTCTGAAGAAGAAAGCATCAAAAG 745
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 -T--AAGGAAGGCTGCGAAGCTGCTAACGGCCTTGATTCTGAAGAAGAAAGCATCAAAAG 176
Query 746 AAGGACTTGGCGATTTCTT----A----GATATAATATTTGATGAAATGGAAAAGGATGG 797
||||||||||||||||||| | || || ||||||||||||||||||||||||||
Sbjct 177 AAGGACTTGGCGATTTCTTGGACAGTTGGACATTATATTTGATGAAATGGAAAAGGATGG 236
Query 798 GACCGCTTTAGATATAGACAAAGCCGTAAACTTAATATTCGTCTTCTTCATACTCTCCCA 857
| |||||||||| ||||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct 237 GGCCGCTTTAGACATAGACAGAGCCGTGAACTTGATATTCACCTTCTTCATACTCTCCCA 296
Query 858 AGAGACAACTCCTGGTGTTCAAGGAGCGGTTGTGAAGCTTGTAGCAGACCACCCCAGCGT 917
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAGACAACTCCCGGTGTTCTAGGAGCGGTTGTGAAGCTTGTAGCAGACCACCCCAGCGT 356
Query 918 TATGGAAGAA 927
||||||||||
Sbjct 357 TATGGAAGAA 366
Score = 265 bits (143), Expect = 8e-70
Identities = 174/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1015 ACTCACATGGTTATCAAAGAGTCTCTTCGGTTTACTAGTACACAACCTACAGTGCACAGA 1074
||| ||| ||| ||||||||||| ||| |||||||||||||||||||||| ||||| |||
Sbjct 366 ACT-ACA-GGTCATCAAAGAGTCGCTTAGGTTTACTAGTACACAACCTACCGTGCATAGA 423
Query 1075 ATACCTGATCAGGACGTTCAGATTGGAGATTATACATTACCTGCTGGGTGGCTATTTTTT 1134
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATACATGCTCAGGACGTTCAGATTGGAGATTATACATTACCTGCTGGGTGGCTATTTTTT 483
Query 1135 GGCATCCCTCAAGTTCACTTTGATGAAGAAAAGTATGATGATCCACTTACCTTTAATCCA 1194
||||| || |||||||| ||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 484 GGCATTCCGCAAGTTCATTTTGATGAAGAAAAGTATGGTGACCCACTTACTTTTAATCCA 543
Query 1195 TGGAGGTGG 1203
|||||||||
Sbjct 544 TGGAGGTGG 552
> Ahg946789 jgi|Araly1|946789|scaffold_703018.1
Length=277
Score = 257 bits (139), Expect = 1e-67
Identities = 174/191 (91%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 272 TTGATCCCGACGTGAATATGGAGATAGCAAAGGCGAGTTCGCAGTTGCGTGCTACGGAGA 331
|||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| ||||
Sbjct 25 TTGATCCCGACGTGAACATGGAGATGGCAAAGGCGAGTTCGCACTTGGGTGCTACAGAGA 84
Query 332 GCGTAACGCGGATATTTGGAGAA-AACAACCCGTTCCTCCAGAGCAAGGAGATTCATAAA 390
|| ||| ||||||||||||| || |||||| | |||||||||||||||| |||||||||
Sbjct 85 GCTTAAGGCGGATATTTGGA-AAGAACAACGTGCTCCTCCAGAGCAAGGATATTCATAAA 143
Query 391 TATGTCCGGAACTTGACTTCCCGATTTGTTGGTCCCGAGGGTTTAAAAACAAGATTAATT 450
|||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 144 TATGTCCGGAACGTGACTACTCGATTTGTTGGTCCCGACGGTTTAAAAACAAGATTAATT 203
Query 451 CATGACATTGA 461
|||||||||||
Sbjct 204 CATGACATTGA 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5