BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15350.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1 2248 0.0
Ahg494842 jgi|Araly1|494842|fgenesh2_kg.8__658__AT5G47990.1 1293 0.0
Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1 483 2e-135
Ahg933050 jgi|Araly1|933050|scaffold_401038.1 276 4e-73
Ahg930044 jgi|Araly1|930044|scaffold_302501.1 167 3e-40
> Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1
Length=1564
Score = 2248 bits (1217), Expect = 0.0
Identities = 1454/1569 (93%), Gaps = 13/1569 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTATTGATCATCTTCATCCTCTTATGTCTCTTGTCATTCCTATGTTACTCTCTC 60
||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1 ATGGCAGCATTGATCATCTTCATCCTCTTATGTCTCTTCACATTCCTCTGTTACTCTCTC 60
Query 61 TTCTTCATGAAACCTAAA-GATTCACGAGATGGCCGTGACCTTCCTCCGAGCCCTCCTTC 119
|||||||||||||| ||| || |||||||||| |||||||||||||||||| ||||||||
Sbjct 61 TTCTTCATGAAACC-AAAGGACTCACGAGATGACCGTGACCTTCCTCCGAGTCCTCCTTC 119
Query 120 TCTTCCAATCATCGGTCATCTTCACCTAATTCTTCTGTCTACTTTAACCCACAAGTCTTT 179
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TCTTCCTATCATCGGTCATCTTCACCTAATTCTTCTCTCTACTTTAACCCACAAGTCTTT 179
Query 180 TCAGAGACTCTCATCAAAGTATGGGCCTCTTCTCCATCTCCGCATCTTCCACGTACCTAT 239
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 180 TCAGAGACTCTCATCCAAGTATGGACCTCTTCTCCATCTCCGCATCTTCCACGTTCCCAT 239
Query 240 AGTCCTCGCCTCCTCAGCCTCAGTGGCCTACGAAATCTTCAGGGACCAAGACGTGAATGT 299
||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TGTCCTCGTCTCCTCGGCCTCAGTGGCCTACGATATCTTCAGGGACCAAGACGTGAATGT 299
Query 300 ATCATTTCGGCATTCGCCTCCGATTGAAGAGTCTCTCTTTTTGGGGTCGTATAGCTTCAT 359
||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 300 ATCCTTTCGGCATTCCCCTCCGATCGAGGAGTCTCTCTTTTTGGGATCGTATAGCTTCAT 359
Query 360 TAGCGCCCCCTATGGAGATTACTGGAAATTCATGAGGAAGCTCATGGTTACCAAGATTCT 419
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CAGCGCTCCTTATGGAGATTACTGGAAATTCATGAGGAAGCTCATGGTTACAAAGATTCT 419
Query 420 TGGACCGCAGGCACTCGAGCGGTCACGAAGATTCCGTGAAGATGAGCTTGATAGGTTTTA 479
||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 420 TGGACCGCAAGCACTCCAGCGGTCACGAAGATTCCGTGAAGATGAGCTTGATCGGTTCTA 479
Query 480 TAAAACTCTGCTCGACAAGGCGATG-AAGAAGGAGAGTGTTGAGATTGTTGAGGAAGCAG 538
|||| ||| ||||| ||||||| | |||||||||| ||||||||| | |||||||||||
Sbjct 480 CAAAAATCTACTCGATAAGGCGA-GTAAGAAGGAGATTGTTGAGATCGGTGAGGAAGCAG 538
Query 539 CGAAGCTCAATAACAACACCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGAGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGAAGCTCAATAACAACACCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGAGA 598
Query 599 CCGGTGAGGCGGAGAGAATCAGAGGCTTGGTGACTGAATCAATGGCTTTGACAAAGAAAA 658
||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 599 GCGGTGAGGCAGAGAGGGTCAGAGGCTTGGTGACTGAGTCAATGGCCTTGACAAAGAAAA 658
Query 659 TTTTCTTGGCGACCATCTTTCACAAACCGCTTAAGAAGCTCGGGATCTCACTTTTCAAAA 718
|||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 659 TTTTCTTGGCGACCATCTTTGACAAACCACTTAAGAAGCTCGGGATCTCACTGTTCAAAA 718
Query 719 AGGAGATAATGAGTGTTTCCCGCAAGTTCGATGAGCTACTAGAGAAGATTCTTGTGGAAC 778
||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 719 AGGAGATAATGAGTGTTTCCCACAAGTTCGACGAGCTGCTAGAGAAGATTCTTGTGGAAC 778
Query 779 ACGAAGAGAAAATGGAGGAGCATCATCAAGGTACTGATATGATGGATGTGTTGTTGGAAG 838
|| |||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 779 ACAAAGAGAAACTGGACGAGGATCATCAAGGTACTGACATGATGGATGTGTTGTTGGAAG 838
Query 839 CTTATCGAGACGAAAACGCTGAGTATAAGATCACAAGAAACCATATCAAGTCAATGTTTG 898
||||| |||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 839 CTTATAAAGACGAAAACGCAGAGTATAAAATCACAAGAAACCATATCAAGTCCTTGTTTG 898
Query 899 TGGATCTTTTCATTGCTGGTACTGATACATCATCAACCACTATACAATGGATCATGGCGG 958
|||| ||||||||||| || ||||| || ||||| ||||||||||| |||||||||||||
Sbjct 899 TGGAACTTTTCATTGCAGGCACTGACACCTCATCGACCACTATACAGTGGATCATGGCGG 958
Query 959 AGATCATTAACCATCCCAAGATTCTTGAGAGGCTAAGAGAAGAAATCGATTTTGTTGTAG 1018
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 959 AGATCATTAACCATCCCAAGATTCTTGAGAGACTAAGAGAAGAAATCAATTCCGTTGTAG 1018
Query 1019 GGAAAA-CAAGGTTGATTCAAGAAACTGACCTACCGAACCTCCTTTACTTGCAAGCGATA 1077
|||||| | || |||||||||||||||||| |||| ||||||| |||||||||||| |||
Sbjct 1019 GGAAAAGC-AGATTGATTCAAGAAACTGACTTACCCAACCTCCCTTACTTGCAAGCAATA 1077
Query 1078 ATCAAAGAAGGGCTAAGATTGCATCCGCCGGGGCCACTCTTACCAAGAACGGTCCAAGAA 1137
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1078 ATCAAAGAAGGGCTAAGATTGCATCCGCCGGGGCCTCTCTTGCCAAGAACGGTCCAAGAA 1137
Query 1138 AGGTGTGAAATTAAAGGGTTCCACATACCAGAGAAGACTATACTTGTTGTCAATTCTTAT 1197
||||||||||||| |||||||||||||||||||||||| || ||| |||| |||||||||
Sbjct 1138 AGGTGTGAAATTAGAGGGTTCCACATACCAGAGAAGACAATTCTTATTGTTAATTCTTAT 1197
Query 1198 GCTATAATGAGAGATCCTGATTTTTGGGAAGATCCTGACGAGTTTAAGCCAGAGAGATTT 1257
|||||||||||||||||||||| |||||||||||| || |||||||| || ||||| |||
Sbjct 1198 GCTATAATGAGAGATCCTGATTATTGGGAAGATCCGGAGGAGTTTAAACCTGAGAGGTTT 1257
Query 1258 TTATCTATTT-CAAGATCAGGGCAAGAGGACGAGATAAGAGATAAATTCCTAAAATACAT 1316
||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 TTAGGT-TTTCCAAGATCAGGACAAGAGGACGAGATAAGAGATAAATTCCTAAAATATAT 1316
Query 1317 TCCTTTTGCCAGCGGCAGGAGAGGTTGTCCAGGAACAAATCTAGCTTATGCT-TCTGTAG 1375
||||||||||||||| |||||||||||||| ||||||||||||||| ||| | |||||||
Sbjct 1317 TCCTTTTGCCAGCGGAAGGAGAGGTTGTCCTGGAACAAATCTAGCTCATG-TCTCTGTAG 1375
Query 1376 GAACCGCGGTTGGAGTGATGGTGCAATGCTTTGATTGGAAAATTGAAGGAGAGAATGTCA 1435
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 1376 GAACCGCGGTTGGAGTGATGGTGCAGTGCTTTGATTGGAAAATCAAAGGAGAGAAAGTCA 1435
Query 1436 ACATGAATGAGGCTGCTGGAACAATGGTGTTGACCATGGCTCACCCTCTTAAGTGCACTC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACATGAATGAGGCTGCTGGAACAATGGTGTTGACCATGGCTCACCCTCTTAAGTGCACTC 1495
Query 1496 CTGTTCCTCGAACCCTAAACCTTTTA---CCTCCCTAGTTCTTGACTTGGGGATGTCAGC 1552
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1496 CTGTTCCTCGAACCCTAAACCTTTTATTACCTTCCTAGTTCTTGACTTGGAGATGTCAGC 1555
Query 1553 TTGCTTTCT 1561
|||||||||
Sbjct 1556 TTGCTTTCT 1564
> Ahg494842 jgi|Araly1|494842|fgenesh2_kg.8__658__AT5G47990.1
Length=1715
Score = 1293 bits (700), Expect = 0.0
Identities = 1260/1527 (83%), Gaps = 52/1527 (3%)
Strand=Plus/Plus
Query 14 TCATCTTCATCCTCTTATGTCTCTTGTCATTCCTATGTTACTCTCTCTTCTTCATGAAAC 73
|||||||| ||||||||||||| |||||| ||| | |||| ||| ||||||| |||||
Sbjct 38 TCATCTTCGTCCTCTTATGTCTTTTGTCACGCCTCTTTTACGATCTTTTCTTCAGGAAAC 97
Query 74 CTAAAGATTCACGAGATGGCCGTGACCTTCCTCCGAGCCCTCCTTCTCTT-CCAATCATC 132
| ||||| ||||||| |||| |||| |||||||||||||||| || || || |||||
Sbjct 98 CAAAAGACTCACGAGCTGGCTGTGATTTTCCTCCGAGCCCTCCATC-ATTACCGATCATT 156
Query 133 GGTCATCTTCACCTAATTCTTCTGTCTACTT-TAACCCACAAGTCTTTTCAGAGACTCTC 191
|| ||||||||||| | || ||| | | || || |||| ||||||| |||| | || |
Sbjct 157 GGGCATCTTCACCTTA-TCCTCT-T-T-GTTCCAATCCACCAGTCTTTCCAGAAAATCGC 212
Query 192 AT-CAAAGTATGGGCCTCTTCTCCATCTCCGCATCTTCCACGTACCTATAGTCCTCGCCT 250
|| |||| ||||| ||||| ||||| |||||| ||||| || | || |||||||| | ||
Sbjct 213 ATCCAAA-TATGGACCTCTCCTCCACCTCCGCTTCTTCAACTTCCCCATAGTCCTTGTCT 271
Query 251 CCTCAG-CCTCAGTGGCCTACGAAATCTTCAGGGACCAAGACGTGAATGTATCATTTCGG 309
|||| | ||||| |||||||||| ||||||| || ||||||||||||||| || | |||
Sbjct 272 CCTC-GCCCTCAATGGCCTACGAGATCTTCAAGGCCCAAGACGTGAATGTCTCCTCTCGC 330
Query 310 CATTCGCCTCCGATTGAAGAGTCTCTCTTTTTGGGGTCGTATAGCTTCATTAGCGCCCCC 369
| | | ||||| || || ||||||||| |||| || |||| |||||||| | | | |||
Sbjct 331 CCTCCCCCTCCAATCGAGGAGTCTCTCATTTTAGGATCGTCCAGCTTCATCAACACTCCC 390
Query 370 TATGGAGATTACTGGAAATTCATGAGGAAGCTCATGGTTACCAAGA-TT-CTTGGACCGC 427
|| |||||||||| ||||||||||| |||| |||||| | |||| | || || |||||||
Sbjct 391 TACGGAGATTACTCGAAATTCATGAAGAAGTTCATGG-T-CCAAAAGTTGCTCGGACCGC 448
Query 428 AGGCACTCGAGCGGTCACG-AAGATTCCGTGAAGATGAGCTTGATAGGTTTTA-TAAAAC 485
|||||||| | | ||| || |||| |||||| ||||||||| ||| |||| || |||||
Sbjct 449 AGGCACTCCAACAGTCGCGAAAGA-TCCGTGCAGATGAGCTGGATCGGTTCTACAAAAAC 507
Query 486 TCTGCTCGACAAGGCGATGAAGAAGGAGAGTGTTGAGATTGTTGAGGAAGCAGCGAAGCT 545
||||| || |||||||||||||| ||||| |||||||||| | | |||||| ||||||
Sbjct 508 -CTGCTTGATAAGGCGATGAAGAATGAGAGCGTTGAGATTGGTAATGAAGCAATGAAGCT 566
Query 546 CAATAACAACACCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGAGACCGGTGA 605
|| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 567 CACTAACAACACCATCTGCAAGATGATTATGGGGAGGAGTTGTTCCGAGGAGAACGGTGA 626
Query 606 GGCGGAGAGAATCAGAGGCTTGGTGACTGAATC-AATGGCTTTGACAAAGAAA-ATTTTC 663
||| |||| | ||||||||||||| || || || | | | |||||||||||| | ||||
Sbjct 627 GGCTGAGACAGTCAGAGGCTTGGTAACCGAGTCGATTTTC-TTGACAAAGAAACA-TTTC 684
Query 664 TTGGCGACCATCTTTCACAAACCGCTTAAGAAGCTCGGGATCTCACTT-TTCAAAAAGGA 722
|||| | |||| ||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 685 TTGGGGGCCATGTTTCACAAACCGCTTAAGAAGCTCGGGATCTCA-TTGTTCGCAAAGGA 743
Query 723 GAT-AATGAGTGTTTCCCGCAAGTTCGATGAGCTACTAGAGAAGATTCTTGTGGAACACG 781
|| ||||||||||||| |||||| || ||||| || |||||||||||||| |||| |
Sbjct 744 -ATTAATGAGTGTTTCCAACAAGTTTGACGAGCTGCTGGAGAAGATTCTTGTTAAACATG 802
Query 782 AAGAGAAAATGGAGGAGCATCATCAAGGTACTGATATGATGGATGTGTTGTTGGAAGCTT 841
|||||||| || |||||||||||||| ||||||| ||| ||||| ||||||||||||| |
Sbjct 803 AAGAGAAATTGCAGGAGCATCATCAATGTACTGACATGTTGGATATGTTGTTGGAAGCGT 862
Query 842 ATCGAGACGAAAACGCTGAGTATAAGATCACAAGAAACCATATCAAGTCAATGTTTGTGG 901
|| |||||||||| || ||||| |||||||| ||| |||| |||||||| |||| ||||
Sbjct 863 ATGGAGACGAAAAGGCAGAGTACAAGATCACTAGAGACCAAATCAAGTCCTTGTTCGTGG 922
Query 902 ATCTTTTCATTGCTGGTACTGA-TACATCATC-AACCACTATACAATGGATCA-TGGCGG 958
|||| |||| ||| || ||||| | | || | ||| |||||||| |||| || ||||||
Sbjct 923 ATCTGTTCAGTGCCGGCACTGAATCC-TCGGCGAAC-ACTATACAGTGGA-CAATGGCGG 979
Query 959 AGATCATTAACCATCCCAAGATT-CTTGAGAGGCTAAGAGAAGAAATCGATTTTGTTGTA 1017
||||||||||| | || || ||| || ||||| || |||||||||||||||| |||||||
Sbjct 980 AGATCATTAACAAGCCTAACATTTCT-GAGAGACTGAGAGAAGAAATCGATTCTGTTGTA 1038
Query 1018 GGGAAAACAAGGTTGATTCAAGAAACTGACCTACCGAACCTCCTTTACTTGCAAGCGATA 1077
|| || | ||||||| ||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 1039 GGTAATATAAGGTTGGTTCAAGAAACTGATCTACCGAACCTCCCTTACTTGCAAGCCATA 1098
Query 1078 ATCAAAGAAGGGCTAAGATTGCATCCGCCGGGGCCACTCTTACCAAGAACGGTCCAAGAA 1137
|||||||||||||| |||||||||| || || || | || | || || ||||||||
Sbjct 1099 GTCAAAGAAGGGCTACGATTGCATCCTCCAGGACCTGTGGTA--AGGA-CGTTCCAAGAA 1155
Query 1138 AGGTGTGAAATTAAAGGGTTCCACATACCAGAGAAGACTAT-ACTTGTTGTCAAT-TCTT 1195
| |||||||| ||||| ||| ||||||| ||||| || | |||| |||| ||| | ||
Sbjct 1156 ACATGTGAAATCAAAGGATTCTACATACCGGAGAAAAC-ACGACTTTTTGTTAATAT-TT 1213
Query 1196 ATGCTATAATGAGAGATCCTGATTTTTGGGAAGATCCTGACGAGTTTAAGCCAGAGAGAT 1255
||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
Sbjct 1214 ATGCTATAATGAGAGATCCTGATTTCTGGGAAGATCCTGAGGAGTTTAAACCAGAGAGGT 1273
Query 1256 TTTTATCTAT-TTCAAGATCAGGGCAAGAGGACGAGATAAGAGATAA-ATTCCTAAAATA 1313
||||| || | |||||||| ||||||||| || |||| |||||| | || | |||||||
Sbjct 1274 TTTTAACT-TCTTCAAGATTAGGGCAAGAAGATGAGAAAAGAGAGGACATGC-TAAAATA 1331
Query 1314 CATTCCTTTTGCCAGCGGCAGGAGAGGTTGTCCAGGAACAAATCTAGCTTATGCT-TCTG 1372
||||||||| | ||||| ||||||| |||||| ||| || ||||||||||||| || |
Sbjct 1332 CATTCCTTTCGGTAGCGGAAGGAGAGCTTGTCCTGGATCACATCTAGCTTATGCCGTC-G 1390
Query 1373 TAGGAACCGCGGTTGGAGTGATGGTGCAATGCTTTGATTGGAAAATTGAAGGAGAGAATG 1432
| |||| | ||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct 1391 TTGGAAGTGTAATTGGAGTGATGGTGCAAAACTTTGATTGGAGAATCAAAGGAGAAAAAA 1450
Query 1433 TCAACATGAATGAGGCTGCTGGAACAATGGTGTTGACCATGGCTCACCCTCTTAAGTGCA 1492
|||||||||| |||| | |||||||||| ||||||||||||||| |||||| ||||||
Sbjct 1451 TCAACATGAAGGAGG--G-TGGAACAATGACGTTGACCATGGCTCAGCCTCTTCAGTGCA 1507
Query 1493 CTCCTGTTCCTCGAACCCTAAAC-CTT 1518
||||||||||||||||||||||| |||
Sbjct 1508 CTCCTGTTCCTCGAACCCTAAACACTT 1534
> Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1
Length=1562
Score = 483 bits (261), Expect = 2e-135
Identities = 1089/1472 (74%), Gaps = 123/1472 (8%)
Strand=Plus/Plus
Query 103 CCTCCGAGCCCTCCTTCTCTTCCAATCATCGGTCATCTTCACCTAATTCTTCTGTCTACT 162
||||| ||||||||||||||||| ||||| ||||||||||||| |||| || | | ||
Sbjct 118 CCTCCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCACC---TTCTCCTCTTTGCT 174
Query 163 TTAACCCACAAGTCTTTTCAGAGACTCTCAT-CAAAGTATGGGCCTCTTCTCCATCTCCG 221
| || |||||||| |||||| | | |||||| |||| || || ||| |||||||||| ||
Sbjct 175 TCAATCCACAAGTGTTTTCAAAAAATCTCATCCAAA-TACGGACCTTTTCTCCATCTTCG 233
Query 222 CATCTTCCACGTACCTA-TAGTCCTCGCCTCCTCAGCCTCAGTGGCCTACGAAATCTTC- 279
||| ||||| || || | || | || | ||||| ||||||| ||| ||||| ||||||
Sbjct 234 CATTTTCCATGTCCCCATTA-TTCTTGTGTCCTCTGCCTCAGCGGCTTACGATATCTTCA 292
Query 280 AGGGACCAAGACGTGAATGTATCATT-TC--GG-CAT-TCGC-CTCCGATTGAAGAGTC- 332
||| | || || | || || || || || || || | || | ||| |||| | |
Sbjct 293 AGGCA-CACGATATTAAAGTCTC-TTATCGAGGTGATGTTGCAAT-CGA-TGAA-TG-CA 346
Query 333 TCTCTTTTTGGGGTCGTATAGCTTCA-TT-AGCGCCCCCTATGGAGATTACTGGAAATTC 390
| | | ||| || || | | | | | || || || || | || ||||||||||||||||
Sbjct 347 T-TGTGTTT-GGTTCTTCT-GGAT-ATTTCAGAGCTCCATCTGAAGATTACTGGAAATTC 402
Query 391 ATGAGGAAGCTCATGGTTACCAAGATTCTTGGACCGCAGGCACTCGAGCGGTCACGAAGA 450
|||||||||||||| | | | | |||||||| || || || |||||| |||| |
Sbjct 403 ATGAGGAAGCTCATCATGGCTAGGGCGCTTGGACCCCAAGCGCTAGAGCGGACACGTGGT 462
Query 451 -TTCCGTGAAGATGAGCTT-GATAGGTTTTATA-AAACTCTGCTCGACAAGGCGATGAAG 507
||| ||| || |||| || || |||||| ||| ||| | | ||||| |||||||| ||
Sbjct 463 GTTC-GTGTAGCTGAG-TTAGAAAGGTTTCATAGAAA-TATACTCGATAAGGCGATTAAA 519
Query 508 AAGGAGAGTGTTGAGATTGTTGAGGAAGCA-GCGA-AGCTCAATAACAACACCATCTGCA 565
|| | || || |||| | ||| |||||| | || | ||| |||||||||| || | |
Sbjct 520 AAACAAAGCCTTAAGATCGGTGAAGAAGCAAG-GATA-CTCGTTAACAACACCCTCGGAA 577
Query 566 AGATGATCATGGGGAGGAGTTGTTCTG-AGGAGACCGGTGAGGCGGAGAGAA-T--CAGA 621
| |||| | | || || |||| ||| | || ||| | ||| | ||| | || | ||||
Sbjct 578 AAATGAGCCTTGGAAGTAGTTTTTCAGTAG-AGAACAATGATG-GGACAAAAGTTTCAGA 635
Query 622 GGCTTGGTGACTGAA-TCAA-TGGCTTTGACAAAGAAAATTTTCT-TGGCGACCA-TCTT 677
|| | | | || | | || |||| | | || |||| | |||| || | | ||
Sbjct 636 ATTTTC-T-A-TCAAGTTAGCTGA-TTTGTCTCA-AATGTTTTGTGTGGC-ACAAATATT 689
Query 678 TCACAAACCGCTTA-AGAAGCTCGGGATCTCACTTTTCAAA-AAGGAGATAATG-AGTGT 734
||| || ||||| | ||||| | |||||||| ||||| ||| ||| |||| ||| | |||
Sbjct 690 TCATAAGCCGCT-AGAGAAGGTGGGGATCTCTCTTTT-AAAGAAGCAGATTATGGA-TGT 746
Query 735 TTCCCGCAAGTTCGATGAGCTACTAGAGAAGATTCTTGTGGAAC-ACGAAGAGAAAA-TG 792
||| | || || || ||| | ||||| || ||||||||| || |||| | ||||| ||
Sbjct 747 TTCACATAAATTTGAGGAGTTGCTAGAAAATATTCTTGTG-AAGTACGAGG-GAAAAATG 804
Query 793 GAGGAGCATCATCAAGGTACTGATATG-ATGGATGTGTTGTTGGAAGCTTATCGAGACGA 851
| || ||||| ||| |||||| || ||||||| || |||| |||||||| ||||||
Sbjct 805 AACGACCATCA--AAG-TACTGA-ATTCATGGATGCATTATTGGCAGCTTATCAAGACGA 860
Query 852 AAACGCTGAGTATAAGATCACAAGAAACCATATCAAGTCAATGTTTGTGGATCTTTTCAT 911
|||||| |||||||||||||| || |||||||||||| || | || | ||| || ||| |
Sbjct 861 AAACGCAGAGTATAAGATCACTAGGAACCATATCAAGGCATTATTAGCGGAGCTATTCTT 920
Query 912 TG---CTGGT-ACTGATACATCATCAACCACTATACAATGGATCA-TGGCG-GAGATCAT 965
|| | ||| | | | | || ||||| || | | |||| || ||| | || ||| |
Sbjct 921 TGGAGCCGGTGAGTCCT-CTTCTTCAACAAC-A--CGATGGG-CAATGG-GAGAAATC-T 973
Query 966 T-AACCATCCC-AAGATTCTT-GAGAGGCTAAGAGAAGAAATCGATTTTGTTGTAGGGAA 1022
| ||| | ||| ||||| ||| ||||| | ||||||||||| ||||| || || |||||
Sbjct 974 TCAACAA-CCCTAAGAT-CTTTGAGAGATTGAGAGAAGAAATAGATTTAGTGGT-GGGAA 1030
Query 1023 A-ACAAGGTTGATTCAAGAAACTGACCTACCGAACCT-CCTTTACTTGCAAGC-GATAAT 1079
| ||||||||||||||||||| ||| ||||| || || || | |||||||||| | | |
Sbjct 1031 ATACAAGGTTGATTCAAGAAAGTGATCTACCAAAACTTCCAT-ACTTGCAAGCAG-TCGT 1088
Query 1080 CAAAGAAGGGCTAAGATTGCATCCGCCGGG-GCCACTCTTACCAAGA-ACGGTCCAAGAA 1137
||||||| ||||||||||| ||| ||| || |||| |||||| | | || ||
Sbjct 1089 CAAAGAATCTCTAAGATTGCACCCGGTGGGAGCGG-TCTTGCCAAGAGAATTTACAC-AA 1146
Query 1138 AGGT-GTGAA-ATTAAAGGGTTCCACATACCA-GAGAAGA-CTAT-ACTTGTTGTCAATT 1192
| | || || ||| ||||||| | |||| | ||| || | || |||||| |||||
Sbjct 1147 -GATTGT-AACATTGGAGGGTTCTATATAC-ATGAGG-GAAC-ATCACTTGTCATCAATG 1201
Query 1193 CTTATGCTATAATGAGAGATCCTGATTTTTGGGAAGATCCTGACGAGTTTAAGCCAGAGA 1252
||||| |||||||||||||||||||| |||||||||||||| | |||||||| |||||||
Sbjct 1202 CTTATTCTATAATGAGAGATCCTGATATTTGGGAAGATCCTAATGAGTTTAAACCAGAGA 1261
Query 1253 GATTTTTATCTATTTCAAGATCAGGGCAAGAGGACGAGATAAGAGAT-AAATTCCTAAAA 1311
| ||| || ||| |||||||||||| |||||||| |||| || ||| ||| | ||||
Sbjct 1262 GGTTTCTAACTACTTCAAGATCAGGACAAGAGGAAGAGAAAAAAGAGCAAACAC-TAAAG 1320
Query 1312 TACATTCCTTTTGCCAGCGGCA-GGAGAGGTTGTCCAGGAACAAATCTAGCTTATGC-TT 1369
| | | ||||||| | |||| | ||||||| ||||| ||| |||||| | |||| | ||
Sbjct 1321 TTCCTCCCTTTTGGC-GCGGGAAGGAGAGGATGTCCTGGATTAAATCTTGGTTATACCTT 1379
Query 1370 CTGTAGGAACCGCGGTTGGAGTGATGGTGCAATGCTTTGATTGGAAAATTGAAGGAGAGA 1429
|||| |||| | ||||||||||||||||||||||||| ||| | || |||||||| |
Sbjct 1380 A-GTAGAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAGATCGAAGGAGATA 1438
Query 1430 ATGTCAACATG-AATGA-GGCTGCTGGAACAA--TGGTG-TTG-ACCATGGCTCA-CCCT 1482
| ||||||||| || || || | | ||| || | | ||| | ||||||| |||
Sbjct 1439 AAGTCAACATGGAA-GAAGGTT-CAGGATTAAGATTTTTCTTGGATT-TGGCTCATCCC- 1494
Query 1483 CTTAAGTGCACTCCTGTTCCTCGAACCCTAAA 1514
|||||||||||||||||| |||||| | ||||
Sbjct 1495 CTTAAGTGCACTCCTGTTGCTCGAATCATAAA 1526
> Ahg933050 jgi|Araly1|933050|scaffold_401038.1
Length=373
Score = 276 bits (149), Expect = 4e-73
Identities = 285/349 (82%), Gaps = 16/349 (5%)
Strand=Plus/Plus
Query 1181 TTGTTGTCAATTCTTATGCTATAATGAGAGATCCTGATTTTTGGGAAGATCCTGACGAGT 1240
||||| | ||| |||||||||||||||||||||| || |||||||||||| ||||
Sbjct 1 TTGTTATTAATGGTTATGCTATAATGAGAGATCCTAATAACTGGGAAGATCCTCTGGAGT 60
Query 1241 TTAAGCCAGAGAGATTT-TT-ATCTATTTCAAGATCAGGGCAAGAGGACGAGATAAGAGA 1298
|||| || ||||| ||| || || | |||||||||| | ||| |||||| ||||| |||
Sbjct 61 TTAAACCCGAGAGGTTTCTTGAT-T-CTTCAAGATCAAGCCAAAAGGACGCGATAAAAGA 118
Query 1299 TA-AATTCCTAAAATACATTCCTTTTGCCAGCGGCAGGAGAGGTTGTCCAGGAACAAATC 1357
| || |||||| ||||||| |||| | || || |||||||| ||||| ||| ||||||
Sbjct 119 -AGAAGTCCTAAGATACATTGCTTTCGGGAGTGGAAGGAGAGGCTGTCCTGGAGCAAATC 177
Query 1358 TAGCTTATGCT-TCTGTAGGAACCGCGGTTGGAGTGATGGTGCAATGCTTTGATTGGAAA 1416
|||||||| || ||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 178 TAGCTTAT-CTCTCTGTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAG 236
Query 1417 ATTGAAGGAGAGAATG-TCAACATGAATGAGGCTGCTGGAACAATGG-TGTTGACCATGG 1474
|| ||||||| || | |||||||||||||||||||||||| ||| | || |||||||
Sbjct 237 ATCAAAGGAGATAA-GATCAACATGAATGAGGCTGCTGGAAAAATAACTATT-ACCATGG 294
Query 1475 CTCAC-CCTCTTAAGTGCACTCCTGTTCCTCGAACCCTAAACCT-TTTA 1521
| || ||||||| ||||| || |||||||||||||| ||| || ||||
Sbjct 295 C-CAATCCTCTTACGTGCAGTCTTGTTCCTCGAACCC-AAATCTCTTTA 341
> Ahg930044 jgi|Araly1|930044|scaffold_302501.1
Length=944
Score = 167 bits (90), Expect = 3e-40
Identities = 201/254 (79%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 14 TCATCTTCATCCTCTTATGTCTCTTGTCATTCCTATGTTACTCTCTCTTCTTCATGAAAC 73
|||| |||||| || | || ||||| ||| || | ||||||||| |||| |||| |||||
Sbjct 59 TCATATTCATCTTCCTGTGCCTCTTCTCAATCGTCTGTTACTCTATCTTTTTCAAGAAAC 118
Query 74 CTAAA-GATTCACGAGATGGCCGTGACCTTCCTCCGAGCCCTCCTTCTCTTCCAATCATC 132
| ||| || |||| || ||| || | || ||||| |||||||| |||||||||||||||
Sbjct 119 C-AAAGGACTCAC--GA-GGCTGTAATCTACCTCCCAGCCCTCCGTCTCTTCCAATCATC 174
Query 133 GGTCATCTTCACCTAATTCTTCTGTCTACTTTAACCCACAAGTCTTTTCAGAGACTCTCA 192
|||||||||||||| | || || ||| || || ||||||||||||| |||| | ||||
Sbjct 175 GGTCATCTTCACCT--T-CTCCTCTCTTCTCTATCCCACAAGTCTTTACAGAAAATCTCC 231
Query 193 TCAAAGTATGGGCCTCTTCTCCATCTCCGCATCTTCCACGTACCTAT-AGTCCTCGCCTC 251
|| |||||||| || || ||||||||||| || || |||| || || | |||| | ||
Sbjct 232 TCTAAGTATGGACCCCTCCTCCATCTCCGGATTTTTAACGTCCCCATCA-TCCTTGTTTC 290
Query 252 CTCAGCCTCAGTGG 265
|| ||||||||||
Sbjct 291 GTCTGCCTCAGTGG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5