BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15360.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946792 jgi|Araly1|946792|scaffold_703021.1 1960 0.0
Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1 688 0.0
Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1 289 5e-77
> Ahg946792 jgi|Araly1|946792|scaffold_703021.1
Length=1318
Score = 1960 bits (1061), Expect = 0.0
Identities = 1234/1317 (94%), Gaps = 13/1317 (1%)
Strand=Plus/Plus
Query 260 TTGTCTCCTCTTCCTCTATGGCCTACGAGATCTTCAAGGCCCATGACGTGAACGTCTCTT 319
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTGTTTCCTCTGCCTCTATGGCCTACGAGATCTTCAAGGCCCATGACGTGAACGTCTCCA 63
Query 320 CTCGCGGTATTATTGCTCTTGATGAGTCTCTCATGTTTGGGGCTTCTGGCATCTTGAACG 379
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCGCGGTATTGTTGCGCTTGATGAGTCTCTCATGTTTGGGGCTTCTGGCATCTTGAACG 123
Query 380 CTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCATGGCCACTAAGCTACTCCGAC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCATGGCCACTAAGCTACTCCGAC 183
Query 440 CGCAAGTGCTGGAGCGGTCACGAGGTGTTCGTGTTGAAGAGCTACATAGATTTTACAGGA 499
|||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||
Sbjct 184 CGCAAGTGCTGGAGCGGTCACGAGGTATTCGTGTTGAAGAACTACAGCGGTTTTACAGGA 243
Query 500 GCATTCTTGATAAGGCGACGAAGAATGAGAGCGTTGAGATCGGTAAGGAAGCGATGAAGC 559
||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 244 GCATTCTCGATAAGGCCACGAAGAATGAGAGCGTTGAGATTGGTAAAGAAGCAATGAAGC 303
Query 560 TCATGAACAACACCTTGTGTAAACTGATCATGGGAAGGAGTTTTTCAGAGGACAACGGTG 619
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 TCATGAACAACACCTTGTGTAAAATGATCATGGGAAGGAGTTTTTCAGAGGACAACGGTG 363
Query 620 AATCAAATAGAGTCAGGGGCTTGGTTGATGAAACCTATGCCTTGTCCGAGAAGATATTCT 679
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 364 AATCAAATAGAGTCAGGGGCTTGGTTGATGAAACGTATGCTTTGTCAGAGAAGATATTCT 423
Query 680 TGGCAGCTATATTGCGCAGACCTCTTGCAAAACTTCGGATCTCACTATTCAAGAAAGAGA 739
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 424 TGGCAGCTATATTGCGCAGACCTCTTGCGAAGCTTCGGATCTCACTATTCAAGAAACAGA 483
Query 740 TAATGGGTGTCTCCAACAAATTCGATGAGCTACTAGAGAGGATCCTTCAGGAACGCAAAG 799
|||||||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||
Sbjct 484 TAATGGGTGTTTCCAACAAATTCGATGAGCTGCTAGAGAAGATTCTTCAGGAACACAAAG 543
Query 800 AGAATTTGGAAGAGAAGAATAATGAAGGTATGGATATGATGGACGTGTTGTTGGAAGCTT 859
|||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 544 AGAAACTGGAAGAGAAGAATCATGAAGGTATGGATATGATGGACGTGTTGTTGGCAGCTT 603
Query 860 ATGGAGATGAAAACGCTGAGTATAAGATCACATGGAAGCATATCAAGGCATTTTTCGTGG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATGGAGATGAAAACGCTGAGTATAAGATCACATGGAAGCATATCAAGGCATTTTTCGTGG 663
Query 920 AGTTTTTCATTGGAGGGACTGATACCTCAGTGCAAACAACACAATGGGCAATGGCCGAGA 979
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 664 AGTTTTTCATTGGAGGCACTGATACCTCAGTGCAAACAACACAGTGGGCAATGGCCGAGA 723
Query 980 TGATCAATAACGCTAACGTTCTTGAGAGACTGAGAGAAGAAATCGTCTCCGTTGTAGGGG 1039
||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 724 TGATCAACAATTCTAGTGTTCTTGATAGACTGAGAGAAGAAATCGTCTCCGTTGTAGGGG 783
Query 1040 AAACAAGGTTGATCCAAGAAACAGATTTACCAAACCTACCTTATTTGCAAGCAGTGGTTA 1099
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 784 AAACAAGGTTGATCCAAGAAACAGATTTACCAAACCTTCCTTATTTGCAAGCAGTGGTTA 843
Query 1100 AGGAAGTTCTAAGATTGCACCCACCATCACCGGTCTTAATACGGAAGTTCCAAGAAAAAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGAAGTTCTAAGATTGCACCCACCATCACCGGTCTTAATACGGAAGTTCCAAGAAAAAT 903
Query 1160 GTGAGGTCAAAGGATTTTACATACCGGAGAAGACAACACTCATTGTTAATGTTTACGCTA 1219
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 904 GTGAAGTCAAAGGATTTTGCATACCGGAGAAGACAACACTCATTGTTAATGCTTATGCTG 963
Query 1220 TAATGAGAGATTCTGATTCTTGGGAAGATCCTGAGAAATTTAAGCCAGAGAGGTTTCTAA 1279
| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 964 TGATGAGAGATTATGATTCTTGGGAAGATCCTGAAAAATTTAAGCCAGAGAGGTTTTTAA 1023
Query 1280 CTTCTTCAAGATCAGGGGAAGAGGATGA-AAA-AG-A-G--CTTAAGTTTCTTCCTTTTG 1333
|| ||||||||||||| ||||||| || ||| || | | |||| || ||||||||||
Sbjct 1024 GTTTTTCAAGATCAGGGCAAGAGGACGAGAAAGAGCAAGAACTTAGGTACCTTCCTTTTG 1083
Query 1334 GCAGCGGAAGGAGAGGATGTCCTGGAGCAAACCTTGGTTCTATATTTGTAGGAACCGCAA 1393
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 GCAGCGGAAGGAGAGGATGTCCTGGAGCAAATCTTGGTTCTATATTTGTAGGAACCGCAG 1143
Query 1394 TAGGAGTGATGGTGCAGTGCTTTGACTGGAAAATCAAAGAAGATAAGGTCAACATGGAAG 1453
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1144 TAGGAGTGATGGTGCAGTGCTTTGATTGGAAAATCAAAGAAGATAAGGTCAACATGGAAG 1203
Query 1454 AGACTTTTGAAGGAATGACCCTGAAAATGGTTCATCCGCTTACT-TGCACTCC-GTTCTT 1511
|||||||||||||||||||||||||||||||||| || |||| | |||||||| |||||
Sbjct 1204 AGACTTTTGAAGGAATGACCCTGAAAATGGTTCACCCCCTTA-TGTGCACTCCAGTTCTA 1262
Query 1512 CGAACCCAACCTTTATCTTTTGCTTT-TAATCTCTAAATTTCC-GTGTCTGATACTT 1566
|||| |||||||| |||||| ||| |||| ||||||||||| | |||||| |||
Sbjct 1263 AGAACTCAACCTTTTTCTTTTA-TTTCTAATATCTAAATTTCCAGC-TCTGATGCTT 1317
> Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1
Length=1688
Score = 688 bits (372), Expect = 0.0
Identities = 1204/1589 (76%), Gaps = 123/1589 (8%)
Strand=Plus/Plus
Query 10 ATCATCGTTGAGTTCCAAAActtctttatcttcatccttc-tatgcctcttctcactcct 68
||||||||||| || ||||||| ||| || || |||| || || |||||||||| | ||
Sbjct 32 ATCATCGTTGACTTTCAAAACTGCTTCATTTTTATCC-TCTTAAGCCTCTTCTCGGTACT 90
Query 69 ctgtcactctctcttcttcaAGAAACCAAAAG-A-CTC-AC-GAAGCTTTG-TTCTGCCT 123
|||| ||||||||||||| | ||||||||||| | ||| || | ||||| || | |||
Sbjct 91 CTGTTACTCTCTCTTCTTTAGGAAACCAAAAGAACCTCGACTTCA-CTTTGATT-TACCT 148
Query 124 TCAAGCCCTCCTTCTCTTCCAATCATCGGCCATCTTCACCTTCTCCTCTCTGTCCTAACT 183
| |||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| |
Sbjct 149 CCGAGCCCTCCGTCTCTTCCGATCATCGGTCATCTTCACCTTCTTCTCTCTGTTCTAA-T 207
Query 184 -CACAAG-TCTCTT-CAGAAACTCTCC-TCCAAGTACGGACCTCTTCTCCTTATC--CGC 237
||| || ||| || | |||||||||| | |||||||||| || |||| | |||| ||
Sbjct 208 CCAC-AGATCT-TTACTGAAACTCTCCAT-CAAGTACGGATCTATTCT-C-TATCTTCGG 262
Query 238 ATCTTCTATG-TACCCAT-CA-TTCTTGTCTCCTCTTCCTCTATGGCCTACGAGATCTTC 294
|||| || | | ||| | | || ||||||| | || || || || |||||||||
Sbjct 263 GTCTT-TA-GATTCCC-TGTAGCCCTCATCTCCTCAGCATCAATTGCTTATGAGATCTTC 319
Query 295 AAGGCCCATGACGTGAACGTCTCTTCTCGCGGTATT--ATTGC-TCTTGATGAGTCTCTC 351
| || || ||||| ||| |||| ||||| ||| || || | | ||||| | || |
Sbjct 320 AGGGAACACGACGTTAACATCTCGTCTCGTGGT-TTCCCTT-CGAC-CGATGA-T-TC-C 373
Query 352 ATGTTTG-GGGCTTCTGGCATCTTGA-A-C-GCTCCCTATGGAGATTACTGGAAGTTCAT 407
| |||| || ||| || ||| | | | |||||||||||||||||||||||||||||
Sbjct 374 CTTTTTGCCGG-ATCTTTCAGCTTCACATCTGCTCCCTATGGAGATTACTGGAAGTTCAT 432
Query 408 GAAGAAGCTCATGGCCACTAAGCTA-CTCCGA-CCGCAAGTGCTGGAGCGGTCACGAGGT 465
|||||||||| ||| || || || || || || || | || |||||||||||| |
Sbjct 433 GAAGAAGCTCCTGGTTACGAA-CTTGCTTGGAGCC-CAGGCACTCGAGCGGTCACGAAGA 490
Query 466 GTTCGTGTTGAAGAGCTACATAGATTTTACAGGAGCATTCTTG-ATAAGGCGACGAAGAA 524
|| |||| || |||||| || | ||||||| || | | ||| |||| |||| ||| ||
Sbjct 491 GTCCGTGCAGATGAGCTAGATCGGTTTTACAAGAACCTG-TTGGATAAAGCGATGAATAA 549
Query 525 TGAGAGCGTTGAGATCGGTAAGGAAGCGATGAAGCTCA-TGAACAACACCTTGTGTAAAC 583
|||||||| ||||| || ||||||| ||||||||| | ||||||| | | || ||
Sbjct 550 AGAGAGCGTGGAGATATGTGCGGAAGCGTTGAAGCTCAGT-AACAACATCATCTGCAAGT 608
Query 584 TGATCAT-GGGAAGGAGTTTTTCAGAGGACAACGGTGAATCAAATAGAGTCAGGGGCTT- 641
||||||| |||| |||||| ||||||||| || ||||| | | | |||||||| |||
Sbjct 609 TGATCATAGGGA-GGAGTTGTTCAGAGGAGAATGGTGAGGCGGAGAAAGTCAGGG-CTTT 666
Query 642 GGTTGAT-GAAACCTATGCCTTGTCCGA-GAAGATATTCTTGGCAG-CTATATTGCG-C- 696
|| | | || ||| |||| | || |||||| || |||||| | || ||||| |
Sbjct 667 GGCT-ACCGAGTTAGATGGCTTGAC-GAAGAAGATCTTATTGGCAAAC-ATGTTGCGACC 723
Query 697 AGACCTCTTGCAAAA-CTTCG--GATCTCACTATTCAAGAAAG-AGATAATGGGTGTCTC 752
|| | || |||| ||| | | ||||||| || | ||||| | || |||| ||| ||
Sbjct 724 AGGG-T-TTA-AAAAGCTT-GTTG-TCTCACTGTTTA-GAAAGGAAATGATGGATGTTTC 777
Query 753 CAACAAATTCGATGAGCTACTAGAGAGGATCCTTCAGGAACGCAAAGAGAATTTGGAAGA 812
|| | ||| |||||||| || || ||||||||| ||||| |||| || |||| |
Sbjct 778 CAGGAGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAACATGAAGATAAACTGGAC-A 836
Query 813 GAAGAATAATGAAGGTATGGA-TATGATGGACGTGTTGTTGGAAGCTTAT-GGAGATGAA 870
| | || || |||||| || | | ||||||| |||||||| ||||||| || || ||
Sbjct 837 G--GCATCATCAAGGTACAGACT-TAATGGACGCGTTGTTGGCAGCTTATCGG-GACAAA 892
Query 871 AACGCTGAGTATAAGATCAC-ATGGAAGCATATCAAGGCATTTTTCGTGGAGTTT-TTCA 928
|| || |||||||||||| | | |||| ||||||||| | ||||||| ||| | | || |
Sbjct 893 AATGCAGAGTATAAGATCTCTA-GGAACCATATCAAGTCGTTTTTCGCGGA-TCTCTT-A 949
Query 929 TTGG-AGGGACTGATACCTCAGTGCAAACAACACAATGGGCAATGGCCGAGATGATCAAT 987
|| | ||| || || |||| |||||||||||||| ||||||||||| ||||| || ||
Sbjct 950 TTTGCAGGCACCGACACCTTGGTGCAAACAACACAGTGGGCAATGGCGGAGATCATGAAC 1009
Query 988 AACGCTAACGTTCTTGAGAGACTGAGAGAAGAAATCG-TCTCCGTTGTAGGGGA-AACAA 1045
||| |||| |||||||||||| |||||| |||||| | | ||||| ||||| | || ||
Sbjct 1010 AACCCTAAAGTTCTTGAGAGATTGAGAGGAGAAATTGAT-TCCGTGGTAGGAAAGAA-AA 1067
Query 1046 GGTTGATCCAAGAAACAGATTTACCAAACCTACCTTATTTGCAAGCAGTGGTTAAGGAAG 1105
|||| || |||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1068 GGTTAATTCAAGAAACTGATTTACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAG 1127
Query 1106 TTCTAAGATTGCACCCACCATCACCGGTCTTAATACGGAAG-TTC-C--AAGAAAAATGT 1161
|||||| ||||||| || || |||| | ||||| ||| | ||||| |||
Sbjct 1128 GACTAAGACTGCACCCTCCGGGTCCTCTCTT--T--GGAAGGTTCTCCCAAGAAGGGTGT 1183
Query 1162 GAGG-TCAAAGGATTTTACATACC-GGAGAAGACAACACTCATTGTTAATGTTTACGCTA 1219
||| | ||| ||||| |||| ||| || |||| ||| || ||||||| ||| |||
Sbjct 1184 -AGGATTGGAGGGTTTTATGTACCAGGAAAA-ACAATACTTATGGTTAATGCTTATGCTG 1241
Query 1220 TAATGAGAGATTCTGATTCTTGGGAAGATCCTGA-GAAATTTAAGCCAGAGAGGTTTCTA 1278
| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 1242 TGATGAGAGATTCTGATTCTTGGGAAGTTCCTGATGAT-TTTAAGCCAGAGAGGTTTCTA 1300
Query 1279 -ACTTCTTCAAGATCAG-G--GGAAGAGGAT-GAAAA-AG-A-GC--TTAAGTTTC-TTC 1327
| ||| |||||||||| | |||| ||||| ||| | || | || |||||| | ||
Sbjct 1301 GA-TTCGTCAAGATCAGAGCAGGAAAAGGATAGAAGAGAGCAAGCGATTAAGTA-CATTG 1358
Query 1328 CTTTTGGCAGCGGAAGGAGAGGATGTCCTGGAGCAAACCTTGGTTCTATATTTGTAGGAA 1387
|||| || || ||||| ||| | |||||||||| ||| || | | ||| ||| ||||||
Sbjct 1359 CTTTCGGAAGTGGAAGAAGAAGCTGTCCTGGAGAAAATCTAGCATATATCTTTATAGGAA 1418
Query 1388 CCGCAATAGGAGTGATGGTGCAGTGCTTTGACTGGAAAATCAAAGAAGATAAGGTCAACA 1447
| ||||| ||||||||||| ||| | ||||| |||| |||||||||||| || | ||||
Sbjct 1419 CTGCAATTGGAGTGATGGTACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAATTAACA 1478
Query 1448 TGGAAGAGACTTTTGAAGGAATGACCCTGAAAATGGTTCATCCGCTTACT-TGCACTCC- 1505
|||||||||| ||| |||| ||| | ||| |||| |||||| |||| | ||||||
Sbjct 1479 TGGAAGAGACAGTTGTAGGACTGAGCTTGACCATGGCTCATCCTCTTAAGAT-CACTCCT 1537
Query 1506 GTT-CTTCGAACCC-AA-CC-TTTATCTT 1530
||| || ||||| | || || |||| |||
Sbjct 1538 GTTGCT-CGAACACTAATCCCTTTAACTT 1565
> Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1
Length=288
Score = 289 bits (156), Expect = 5e-77
Identities = 238/276 (86%), Gaps = 12/276 (4%)
Strand=Plus/Plus
Query 1258 TTTAAGCCAGAGAGGTTTCTAACTTCTTCAAGATCAGGGGAAGAGGATGA-AAA-AG--A 1313
|||||||| ||||||||||||| ||||||||| | ||| |||| || || ||| || |
Sbjct 10 TTTAAGCCGGAGAGGTTTCTAAGTTCTTCAAG-T--GGGAAAGATGAGGAGAAAGAGCAA 66
Query 1314 GC--TTAAGTTTCTTCCTTTTGGCAGCGGAAGGAGAGGATGTCCTGGAGCAAACCTTGGT 1371
|| |||||| |||||||||||| |||| ||| ||||||||||||||| || || | |
Sbjct 67 GCGTTTAAGTACCTTCCTTTTGGCGGCGGTAGGGGAGGATGTCCTGGAGGTAATCTAGCT 126
Query 1372 TCTATATTTGTAGGAACCGCAATAGGAGTGATGGTGCAGTGCTTTGACTGGAAAATCAAA 1431
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTATATTTGTAGTAACCGCAATTGGAGTGATGGTGCAGTGCTTTGACTGGAAAATCAAA 186
Query 1432 GAAGATAAGGTCAACATGGAAGAGACTTTTGAAGGAATGACCCTGAAA-ATGGTTCATCC 1490
| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||
Sbjct 187 GGAGATAAGGTCAACATGGAAGAGACTTATGAAGGAATGAACCT-AAGCATGGTTCATCC 245
Query 1491 GCTTACTTGCACTCC-GTTCTTCGAACCCAACCTTT 1525
||||| ||||| || |||| ||||| |||||||||
Sbjct 246 GCTTAAGTGCACACCAGTTCCTCGAAGCCAACCTTT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5