BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15390.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946787 jgi|Araly1|946787|scaffold_703016.1 1384 0.0
Ahg355315 jgi|Araly1|355315|fgenesh1_pg.C_scaffold_7002488 1120 0.0
Ahg936799 jgi|Araly1|936799|scaffold_500990.1 1068 0.0
> Ahg946787 jgi|Araly1|946787|scaffold_703016.1
Length=1371
Score = 1384 bits (749), Expect = 0.0
Identities = 1174/1374 (85%), Gaps = 50/1374 (4%)
Strand=Plus/Plus
Query 24 GACGATGAAGGTTGAAACCATTAGTAAAGAAATCATAAAGCCATCTTCGCCAACTCCAAA 83
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 26 GACGATGAAGGTTGAAACCATCGGTAAAGAAATCATAAAGCCATCTTCCCCAACTCCAAA 85
Query 84 TAATCTCCAAACTCTCCAACTCTCAATTTACGATCACATCCTTCCTCCAG-TTTACACAG 142
| |||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 86 TGATCTCCGAACTCTCCAACTCTCAATTTATGATCACATCCTTCCTCC-GATTTACACAT 144
Query 143 TAGCCTTTCTCTTCTACACCAAAAATGATTTGATCTCTCAAGAACACACTTCCCACAAAC 202
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 145 TAGCCTTTCTCTTCTACACCAAAAATGATCTCATCTCTCAAGAACACACTTCCCACAAAC 204
Query 203 TCAAGACTTCTCTGTCTGAAACCCTGACCAAGTTCTACCCTCTTGCCGGAAGAATCACCG 262
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 205 TCAAGACTTCTCTGTCCGAAACCTTGACCAAGTTCTACCCTCTTGCCGGAAGAATCAACG 264
Query 263 GAGTAACCGTCGATTGTACCGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCAATAACT 322
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 GAGTAACCGTAGATTGTAACGATGAAGGAACTATCTTTGTCGATGCTCGTGTCAATAACT 324
Query 323 GTCCTCTCACTGAATTTCTCAAGTGCCCTGATTTCGACGCCCTCCAACAGTTGCTTCCTC 382
|| ||||| |||| ||| |||| |||| |||||||||| |||||||||||||||||||||
Sbjct 325 GTTCTCTCTCTGATTTTTTCAAATGCCTTGATTTCGACTCCCTCCAACAGTTGCTTCCTC 384
Query 383 TAGATGTTGTAGACAACCCATACGTGGCTGCTGCCACGTGGCCTTTGCTGCTCGTGAAGG 442
|||| ||||| |||||||||||| |||||||||| || |||||||||||||| |||||||
Sbjct 385 TAGACGTTGTGGACAACCCATACATGGCTGCTGCGACCTGGCCTTTGCTGCTTGTGAAGG 444
Query 443 CAACTTACTTCGGATGCGGAGGCATGGCCATAGGAATCTGCATCACTCACAAAATCGCGG 502
||||||||||| ||| ||||||||||| ||||||||||||||| |||| || || || |
Sbjct 445 CAACTTACTTCCAATGTGGAGGCATGGCAATAGGAATCTGCATCTCTCATAAGATTGCCG 504
Query 503 ACGCAGCCTCCATCTCGACTTTCATTCGGTCCTGGGCCGCCACGGCTCGAGGAGAGAACG 562
||||| |||| ||||| | ||||||| | |||||| | | ||||||||||||| ||
Sbjct 505 ACGCAACCTCTATCTCTAGTTTCATTAAGAGCTGGGCTGGTATGGCTCGAGGAGAGGCCG 564
Query 563 ATGCCGCTGCGATGGAAAGT-CCTGTA-TTTGCTGGTGCGAATTTCTACCCACCAGCCAA 620
| | || | | ||| || || | | ||||| | || || |||||||||||||||||
Sbjct 565 AAGACG--GAG-TGGCGGGTACC-G-AGTTTGCCGCAGCAAACTTCTACCCACCAGCCAA 619
Query 621 TGAGGCTTTTAAGCTACCTGCGGACGAACAAGCCGGCAAGAGAAGCAGCATTACAAAGAG 680
||||| |||||| | || | ||| ||||||||| |||||||||||| || || |||||
Sbjct 620 CGAGGCCTTTAAGTTTCCGGTGGATGAACAAGCCAACAAGAGAAGCAGTATCACGAAGAG 679
Query 681 ATTTGTGTTCGAAGCTTCTAAGGTGGAAGA-TCTCAGGACCAAAGCCGCTAGTGAAGAAA 739
|||||||||||| ||||||||| | ||||| | | ||||| |||| |||||||| ||||
Sbjct 680 ATTTGTGTTCGATGCTTCTAAGTTAGAAGAGT-TGAGGACTAAAGTCGCTAGTGCAGAAG 738
Query 740 CAGTAGACCA-ACCTACGCGGGTGGAGAGCGTTACTGCGCT-CATCTGGAAATGCTTCGT 797
| |||||| | |||||| |||||||||||||| |||||||| | |||||||| | |||||
Sbjct 739 CCGTAGAC-AGACCTACACGGGTGGAGAGCGTCACTGCGCTTC-TCTGGAAAGGGTTCGT 796
Query 798 C---GC---ATCCTCAAAGACAACTACTTGTGATCACAAAGTGCTGGTCCAGCTTGCTAA 851
| || |||||||| ||| ||||||||||||| |||||| || |||| | | |||
Sbjct 797 CTCTGCGGCATCCTCAACGACTACTACTTGTGATCTGAAAGTGTTGATCCAACCAGTTAA 856
Query 852 CTTGCGGTCCAAGATACCTTCCCTTCTG-CA-AGAAAGCTCT-ATCGGAAATCTCATGTT 908
|||||| ||||||||||| || |||||| || | ||| || | ||||||||| ||||| |
Sbjct 857 CTTGCGCTCCAAGATACCCTCGCTTCTGTCACA-AAA-CT-TGATCGGAAATGTCATGCT 913
Query 909 CTCTTCTGTGGTCTTGAGTATTGGTCGAGGAGGGGAAGTTAAAATTGAAGAGGCCGTTAG 968
|||||||||||| |||||| |||||| || ||||||||| ||||||||||||||||||||
Sbjct 914 CTCTTCTGTGGTTTTGAGTGTTGGTCAAGAAGGGGAAGTGAAAATTGAAGAGGCCGTTAG 973
Query 969 AGACTTAC-GaaaaaaaaaGGAGGAGTTAGGAACTGTGATCCTAGACGAGG-GTGGGTCA 1026
|||||||| |||||| || | | || ||| || |||||||| |||||||| | ||||||
Sbjct 974 AGACTTACAGAAAAAGAA-GAATGACTTACAAATTGTGATCCAAGACGAGGAG-GGGTCA 1031
Query 1027 TCTGACTCATCTTCCATGATCGGTTCGAAACTAGCAAATCTGATGCTCACCAACTATTCT 1086
||| ||| ||||||||||| ||||| ||||||||||||||||| || |||| |
Sbjct 1032 TCT---TCA------ATGATCGGTTCTAAACTTGCAAATCTGATGCTCACTAATTATT-T 1081
Query 1087 CG--GTTGAGCTATGAGACTCATGAACCCTATACCGTGAGTAGCTGGTGTAAGCTACCTC 1144
| | ||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 1082 -GAAGATGAGCTATGAGACTCATGAGCCCTACACCGTGAGTAGCTGGTGCAAGCTACCAC 1140
Query 1145 TTTACGAGGCTAGCTTTGGATGGG-ATTCTCCGGTTTGGGTTGTTGGGAATGT-G-TCCC 1201
||||||||| ||| |||||||||| || |||| ||||||||| || ||||| | |||
Sbjct 1141 TTTACGAGGTTAGTTTTGGATGGGGAT-CTCCAGTTTGGGTTACCGGAAATGTTGCTCCT 1199
Query 1202 CCGTGTTAGGCAACTTGGCCATGTTGATAGATTCCAAGGACGGACAAGGAATTGAAGCGT 1261
| | || |||||||| ||||||||| | |||||||||||| | |||||||||||||||
Sbjct 1200 GCTT-TT-GGCAACTTAGCCATGTTGGTCGATTCCAAGGACAAAAAAGGAATTGAAGCGT 1257
Query 1262 TCGTCACACTGCCTGAAGAGAACATGTCGTCCTTCGAGCAGAACCCAGAGTTGCTCGCCT 1321
| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct 1258 TTGTCACACTGCCTGAAGAGAACATGTTGTCCTTTGAGCAGAACCCAGAATTGCTCGCCT 1317
Query 1322 TTGCTACCATGAACCCTAGTGTCTTGGTTTAAATCCTGTACTGAAATTTGTTGT 1375
||||| || |||| |||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1318 TTGCTTCCCTGAATCCTAGTGTCTTGGTCTAAATCCTGCACTGAAATTTATTGT 1371
> Ahg355315 jgi|Araly1|355315|fgenesh1_pg.C_scaffold_7002488
Length=1236
Score = 1120 bits (606), Expect = 0.0
Identities = 1034/1235 (84%), Gaps = 51/1235 (4%)
Strand=Plus/Plus
Query 143 TAGCCTTTCTCTTCTACACCAAAAATGATTTGATCTCTCAAGAACACACTTCCCACAAAC 202
|||||| |||||||||||||||||||||| | ||||||| |||||||| |||||||||||
Sbjct 29 TAGCCTCTCTCTTCTACACCAAAAATGATCTCATCTCTCGAGAACACATTTCCCACAAAC 88
Query 203 TCAAGACTTCTCTGTCTGAAACCCTGACCAAGTTCTACCCTCTTGCCGGAAGAATCACCG 262
||||| |||||||||| |||||| |||||||||||||||||||| |||| ||||||| ||
Sbjct 89 TCAAGGCTTCTCTGTCCGAAACCTTGACCAAGTTCTACCCTCTTTCCGGTAGAATCAACG 148
Query 263 GAGTAACCGTCGATTGTACCGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCAATAACT 322
|||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 149 GAGTAACCATAGATTGTAACGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCGATAATT 208
Query 323 GTCCTCTCACTGAATTTCTCAAGTGCCCTGATTTCGACGCCCTCCAACAGTTGCTTCCTC 382
|||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 209 GTCCTCTCTCTGGATTTCTCAGGTGCCCTGATTTCGAGGCCCTCCAACAGTTGCTTCCTC 268
Query 383 TAGATGTTGTAGACAACCCATACGTGGCTGCTGCCACGTGGCCTTTGCTGCTCGTGAAGG 442
|||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 269 TAGACGTTGTGGACAACCCATACGTGGCTGCTGCGACATGGCCTTTGCTACTCGTGAAGG 328
Query 443 CAACTTACTTCGGATGCGGAGGCATGGCCATAGGAATCTGCATCACTCACAAAATCGCGG 502
||||||||||| ||| |||||||||| |||||||||||||||| ||||||| || || |
Sbjct 329 CAACTTACTTCCAATGTGGAGGCATGGTCATAGGAATCTGCATCTCTCACAAGATTGCCG 388
Query 503 ACGCAGCCTCCATCTCGACTTTCATTCGGTCCTGGGCCGCCACGGCTCGAGGAGAGAACG 562
||||| |||| ||||| |||||||||| | | ||||| || | ||||||||||||| ||
Sbjct 389 ACGCAACCTCTATCTCTACTTTCATTCAGACATGGGCTGCTATGGCTCGAGGAGAGGCCG 448
Query 563 ATGCCGCTGC-GATGGAAAGTCCTGTA-TTTGCTGGTGC-GAATTTCTACCCACCAGCCA 619
| | || | ||| |||| | | ||||||| || || |||||||||||||||||
Sbjct 449 --GA-GATGAAG-TGGCGGGTCCCG-AGTTTGCTGCAGCAGA-TTTCTACCCACCAGCCA 502
Query 620 ATGAGGCTTTTAAGCTACCTGCGGACGAACAAGCCGGCAAGAGAAGCAGCATTACAAAGA 679
| || || |||||| | || | ||| ||||||||| ||||| |||||||| || |||
Sbjct 503 ACGATGCATTTAAGTTTCCGGTGGATGAACAAGCCAATAAGAGGAGCAGCATCACGAAGC 562
Query 680 GATTTGTGTTCGAAGCTTCTAAGGTGGAAGATCTCAGGACCAAAGCCGCTAGTGA-AGAA 738
|||| || ||||| ||||||||| ||||| | |||||||||||||| |||||| | |||
Sbjct 563 GATTCGTTTTCGATGCTTCTAAGTTGGAACAGCTCAGGACCAAAGCTGCTAGT-ACAGAC 621
Query 739 A-CAGTAGACCA-ACCTACGCGGGTGGAGAGCGTTACTGCGCT-CATCTGGAAATG-CTT 794
| |||| ||| ||||||||||||||||||||| |||||||| | | |||||| | |||
Sbjct 622 GTC-GTAG-CCAGACCTACGCGGGTGGAGAGCGTCACTGCGCTTCTT-TGGAAA-GACTT 677
Query 795 CGTCGCATCCT-CAAA---GAC---AACTACTTGTGATCACAAAGTGCTGGTCCAGCTTG 847
||||| | || || | | ||| || ||||||| ||||||||| |||||| |
Sbjct 678 GGTCGC-TGCTGCATCTTTGTCTTTAACGACAAGTGATCAAAAAGTGCTGCTCCAGCCCG 736
Query 848 CTAACTTGCGGTCCAAGATACCTTCCCTTCTGCAAGAAAGCTCTAT-CGGAAATCTCATG 906
|||||||||| ||||||||||||||||||||| ||||||| || | ||| ||| |||||
Sbjct 737 CTAACTTGCGCCCCAAGATACCTTCCCTTCTGCCAGAAAGC-CTGTTCGGCAATGTCATG 795
Query 907 TTCT-CTTCTGTGGTCTTGAGTATTGGTCGAGGAGGGG-AAGTTAAAATTGAAGAGGCCG 964
|| | ||||||| |||||||||||||||| || ||||| |||||||||| ||||||||||
Sbjct 796 TT-TACTTCTGTAGTCTTGAGTATTGGTCCAG-AGGGGGAAGTTAAAATCGAAGAGGCCG 853
Query 965 TTAGAGACTTACGaaaaaaaaaG-GAGGAGTTAGGAACTGTGATCCTAGACGAGGGTGGG 1023
|| |||| ||||||||||| | ||||| ||| || | ||||| |||||||| ||||
Sbjct 854 TTGGAGAGTTACGAAAAAAGG-GTGAGGACTTACGATGTTTGATCAAAGACGAGGATGGG 912
Query 1024 TCATCTGACTCATCTTCCATGATCGGTTCGAAACTAGCAAATCT-GATGCTCACCAACTA 1082
|| | |||||||| ||||| ||||| ||||||||||| || |||| | | || ||
Sbjct 913 TC----G--TCATCTTCGATGATTGGTTCTAAACTAGCAAA-CTTGATGTTTGCTAATTA 965
Query 1083 TTCTCG-GTTGAGCTATGAGACTCATGAACCCTATACCGTGAGTAGCTGGTGTAAGCTAC 1141
||| | | ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct 966 TTC-CAAGATGAGCTATGAGACTCATGAGCCCTACACCGTAAGTAGCTGGTGCAAGCTAC 1024
Query 1142 CTCTTTACGAGGCT-AGCTTTGGATGGG-ATTCTCCGGTTTGGGTTGTTGGGAATGTGTC 1199
| |||||| ||||| | |||||||||| || ||||||||||||||| || ||||| ||
Sbjct 1025 CACTTTACAAGGCTCAT-TTTGGATGGGGAT-CTCCGGTTTGGGTTGCCGGAAATGTTTC 1082
Query 1200 CCCCGTGTTAGGCAACTTGGCCATGTTGATAGATTCCAAGGACGGACAAGGAATTGAAGC 1259
|||| ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1083 TCCCGCGTTGGGAAACTTAGCCATGTTGATCGATTCCAAGGACGGACAAGGAATTGAAGC 1142
Query 1260 GTTCGTCACACTGCCTGAAGAGAACATGTCGTCCTTCGAGCAGAACCCAGAGTTGCTCGC 1319
||| || |||||| || | |||||||||||||| ||||||||||||||||| | |||||
Sbjct 1143 GTTTGTTACACTGTCTCAGGAGAACATGTCGTCTTTCGAGCAGAACCCAGAACTACTCGC 1202
Query 1320 CTTTGC-TACCATGAACCCTAGTGTCTTGGTTTAA 1353
|||||| | || |||| ||||||||||||||||||
Sbjct 1203 CTTTGCCT-CCTTGAATCCTAGTGTCTTGGTTTAA 1236
> Ahg936799 jgi|Araly1|936799|scaffold_500990.1
Length=1373
Score = 1068 bits (578), Expect = 0.0
Identities = 1109/1357 (82%), Gaps = 69/1357 (5%)
Strand=Plus/Plus
Query 24 GACGATGAAGGTTGAAACCATTAG-TAAAGAAATCATAAAGCCATCTTCGC-CAACTCCA 81
|||||||||||||||||||| | | ||||||||||||||| |||||||| | ||||||||
Sbjct 26 GACGATGAAGGTTGAAACCA-TCGCTAAAGAAATCATAAAACCATCTTC-CACAACTCCA 83
Query 82 AATAATCTCCAAACTCTCCAACTCTCAATTTACGATCACATCCTTCCTCCAGTTTACACA 141
||| ||||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct 84 AATGATCTCCAAACTCTCCAACTTTCTATTTATGATCACATTCTCCCTCCTGTTTACACA 143
Query 142 GTAGCCTTTCTCTTCTACACCAAAA-ATGATTTGATCTCTCAAGAACACACTTCCCACAA 200
|| || ||||||||||||| ||||| |||| |||||||||| |||||||| |||||| ||
Sbjct 144 GTCGCATTTCTCTTCTACA-CAAAAGATGACTTGATCTCTCCAGAACACAGTTCCCAAAA 202
Query 201 ACTCAAGACTTCTCTGTCTGAAACCCTGACCAAGTTCTACCCTCTTGCCGGAAGAATCAC 260
|||||||||||||||||| |||||| ||||||| |||||||||||||| || |||||||
Sbjct 203 ACTCAAGACTTCTCTGTCCGAAACCTTGACCAAATTCTACCCTCTTGCTGGCAGAATCAA 262
Query 261 CGGAGTAACCGTCGATTGTACCGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCAATAA 320
||| || ||| | ||||||| | | ||||||||| | ||||| || ||||||||||||||
Sbjct 263 CGGCGTCACCATAGATTGTAACAACGAAGGAGCTGTTTTTGTTGACGCTCGTGTCAATAA 322
Query 321 CTGTCCTCTC-ACTGAATTT-CTCAAG-TGC-CCTGATTTCGACGCCCTCCAACAGTTGC 376
|||||||||| | || |||| || || | | || |||||| | ||||||| ||||| |
Sbjct 323 CTGTCCTCTCTA-TG-ATTTCCT-GAGAT-CTCCGGATTTCAAAACCCTCCAGCAGTTAC 378
Query 377 TTCCTCTAGATGTTGTAGACAACCCATACGTGGCTGCTGCCACGTGGCCTTTGCTGCTCG 436
||||||| || || | || | || |||| ||| ||| | || |||||||||||||| |
Sbjct 379 TTCCTCTGGACGTCATCGATGATCCTTACGAGGCAGCTACTACATGGCCTTTGCTGCTAG 438
Query 437 TGAAGGCAACTTAC-TTCGGATGCGGAGGCATGGCCATAGGAATCTGCATCACTCACAAA 495
||||||| |||||| ||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 439 TGAAGGCGACTTACTTTC-CATGTGGTGGCATGGCCATAGGAATCTGCATCACTCACAAA 497
Query 496 ATCGCGGACGCAGCCTCCATCTCGACTTTCATTCGGTCCTGGGCCGCCACGGCTCGAGGA 555
|||||||||||| ||||||||||||||||||||| ||| ||||| | | ||||||||||
Sbjct 498 ATCGCGGACGCAACCTCCATCTCGACTTTCATTCAGTCTTGGGCTGTTATGGCTCGAGGA 557
Query 556 GAGAACGATGCCG-CTGC-GATGGAAAGTCCTGTA-TTTGCTGGT-GCGAATTTCTACCC 611
||| | || || | || | ||| |||| | | ||||| || || |||||||||||
Sbjct 558 GAGG-C--TGGCGAC-GCAG-TGGCCGGTCCCG-AGTTTGC-GGCAGCAAATTTCTACCC 610
Query 612 ACCAGCCAATGAGGCT-TTTAAGCTACCTGCGGACGAACAA-GCCGGCAAGAGAAGCAGC 669
||||||||||||| | |||||| | || | || ||| || ||| ||||| ||| ||
Sbjct 611 ACCAGCCAATGAGT-TATTTAAGTTTCCGGTTGATGAA-AATGCCAACAAGATAAGTAGA 668
Query 670 ATTACAAAGAGATTTGTGTTC-GAAGCTTCTAAGGTGGAAGATCTCAGGACCAAAGCCGC 728
|| || |||||||| |||||| | || || ||| ||||||| ||||||||||| |||||
Sbjct 669 ATAACGAAGAGATTCGTGTTCAGT-GCGTCCAAGTTGGAAGAGCTCAGGACCAATGCCGC 727
Query 729 TAGTGAAGAAACAGTAGACCAACCTACGCGGGTGGAGAGCGTTACTGCGCT-CATCTGGA 787
||||||||| |||| || |||||| |||||||| ||||| ||||| || | | ||||
Sbjct 728 TAGTGAAGACTTTGTAGCCCGACCTACACGGGTGGAAAGCGTCACTGCACTTCTT-TGGA 786
Query 788 AATGCT-TCGTCG---C---ATCCTCAAAGAC-AACTACTTGTGATCACAAAG-TGCTGG 838
|| || |||| | | ||||||||| | || | |||||||| | ||| | || |
Sbjct 787 AA-GCCATCGTTGAAGCTGGATCCTCAAACAATAA-TGCTTGTGAT-ATGAAGGT-CTTG 842
Query 839 -TCCAGCT-TGCTAACTTGCGGTCCAAGATACCTTCCCTTCTGCAAGAAAGCTCT-ATCG 895
|||||| | |||||||||| |||||||||| |||||||| | |||||| || || |
Sbjct 843 ATCCAGCCCT-CTAACTTGCGCCCCAAGATACCGTCCCTTCTACCTGAAAGC-CTGATTG 900
Query 896 GAAATCTCATGTTCTCTTCTGTGGTCTTGAGTATTGGTCGAGGAGGGGAAGTTAAAATTG 955
||||| | |||||||||||||| |||||||||||| ||| || || ||||||||||||||
Sbjct 901 GAAATATAATGTTCTCTTCTGTCGTCTTGAGTATTAGTCAAGAAGAGGAAGTTAAAATTG 960
Query 956 AAGAGGCCGTTAGAGACTTACGaaaaaaaaaGGAG--GAGTTAGGAAC-TGTGATCCTAG 1012
|| ||||||||||||||||||||||||| |||| || || | || ||| ||| ||
Sbjct 961 AAAAGGCCGTTAGAGACTTACGAAAAAAG--GGAGATGACTT-GCAATATGTAATCAAAG 1017
Query 1013 ACGAGGGTGGGTCATCTGACTCATCTTCCATGATCGGTTCGAAACTAGCAAATCTGATGC 1072
||||||||||||| | | || ||||| ||||| ||||| |||||||||||| | ||||
Sbjct 1018 ACGAGGGTGGGTC-T-T--CT--TCTTCGATGATTGGTTCTAAACTAGCAAATTTAATGC 1071
Query 1073 TCACCAACTATTCTCGGTTGAGCTATGAGACTCATGAACCCTATACCGTGAGTAGCTGGT 1132
||||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||||||||
Sbjct 1072 TCACCAATTATTCGCAGTTGAGCTATGAAACTCACGAGCCCTACACCGTGAGTAGCTGGT 1131
Query 1133 GTAAGCTACCTCTTTACGAGGCTAGCTTTGGATGGG-ATTCTCCGGTTTGGGTTGTTGGG 1191
| || |||||||||| ||||| || |||||||||| || | ||||||||||||| ||
Sbjct 1132 GCAAATTACCTCTTTATGAGGCAAGTTTTGGATGGGGAT-CACCGGTTTGGGTTGCCGGT 1190
Query 1192 AATGTGTCCCCCGTGTTAGGCAACTTGGCCATGTTGATAGATTCCAAGGACGGACAAGGA 1251
|||||| | ||| |||||| |||| | | |||||||| |||||||||||||||||||||
Sbjct 1191 AATGTGGCTCCCATGTTAGACAACGTAACTATGTTGATTGATTCCAAGGACGGACAAGGA 1250
Query 1252 ATTGAAGCGTTCGTCACACTGCCTGAAGAGAACATG-TCGTCCTTCGAGCAGAACCCAGA 1310
||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||
Sbjct 1251 ATTGAAGCGTTTGTCACATTGCCTGAAGAGAACATGAT-GTCTTTCGAGCAGAACACAGA 1309
Query 1311 GTTGCTCGCCTTTGCTACCATGAACCCTAGTGTCTTG 1347
| || ||||||||| || | || ||||||||||||
Sbjct 1310 ACTCCTAGCCTTTGCTTCCGTTAATCCTAGTGTCTTG 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5