BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15396.1 Length=1568 Score E Sequences producing significant alignments: (Bits) Value Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2 2117 0.0 Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 904 0.0 Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418 466 2e-130 > Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2 Length=1459 Score = 2117 bits (1146), Expect = 0.0 Identities = 1342/1438 (93%), Gaps = 8/1438 (1%) Strand=Plus/Plus Query 48 ATGGTAGATCTTTATGAGTTCTGGGCTGTGATAGTTTCACTCATAGTGGTGAAGCTGTGT 107 |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGTAGAGGTTTATGAGTTGTGGGCTGTGGTAGTTTCACTCATAGTGGTGAAGCTGTGT 60 Query 108 CACTCGATCTATCAGTGGAGGAATCCAAAAAGTAATGGAGAACTTCCTCCAGGATCTATG 167 || | ||||||||||||||| ||||| || ||||||||| |||||||||||||||| ||| Sbjct 61 CATTGGATCTATCAGTGGAGAAATCCGAAGAGTAATGGAAAACTTCCTCCAGGATCGATG 120 Query 168 GGTTATCCAATCATTGGAGAGACTTTCGAGTTCATGAAGCCTCATGACGCTATTCAGTTA 227 |||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 121 GGTTTTCCAGTCATCGGAGAGACTTTCGAGTTCATGAAGCCTCATGATGCTATTCAGATA 180 Query 228 CCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTATTT 287 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTATTT 240 Query 288 GGAGGAAAAGTTATAATTTCGACTGATATTGGGTTGAACATGGAGATAGCAAAGACAAAT 347 ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 241 GGAGGCAAAGTTATAATTTCCACTGATATTGGACTGAACATGGAGATAGCAAAGACAAAT 300 Query 348 CATATTCCTGGTATGCCGAAGAGCTTAGCGCGGCTATTTGGGGCAAACAACTTGTTCGTG 407 |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||| Sbjct 301 CATATTCCCGGTATGCCGAAGAGCTTAGTGCGGCTATTTGGGGCAAATAACTTGTTTGTG 360 Query 408 AATAAGGATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTTTAGGTTCGCAAGCT 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AATAAGGATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTTTAGGTTCGCAAGCT 420 Query 468 TTGAAATTAAGAATGCTTCAAGACATCGATTTCTTGGTTCGCACACACCTGAAGGAAGGA 527 ||||||||||| ||| |||| ||||| |||||||||| |||||||||| ||||||||||| Sbjct 421 TTGAAATTAAGGATGATTCAGGACATTGATTTCTTGGCTCGCACACACATGAAGGAAGGA 480 Query 528 GCTAGGAAAGGCAGCCTTGACATCAAGGAAACGACAAGCAAGATCATTATTGAATGTCTT 587 ||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||| Sbjct 481 GCTAGGAAAGGTTGTCTTGACGTGAAGGAAACGACAAGCAAGATCATTATTGAATGTCTT 540 Query 588 GCGAAGAAAGTAATGGGGGAGATGGAACCAGATGCAGCAAAAGAACTCACACTCTGTTGG 647 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GCGAAGAAAGTAATGGGGGAGATGGAACCAGAGGCAGCAAAAGAACTCACACTCTGTTGG 600 Query 648 ACATTTTTCCCAAGGGAATGGTTTGGATTCGCTTGGAATATCCCGGGGACTGGTGTCTAT 707 ||||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||| Sbjct 601 ACATTTTTCCCAACGGAATGGTTTCGATTCGCTTGGAATATCCCGGGGACTGGAGTTTAT 660 Query 708 CGAATGGTGAAGGCAAGAAATCGGATGATGAAGGTACTAAAGGAGACGGTACTTAAGAAA 767 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 661 CGAATGGTGAAGGCAAGAAATCGGATGATAAAGGTACTAAAAGAGACGGTACTTAAGAAA 720 Query 768 AGAGCATCAGGAGAGGAATTGGGGGAC-TTTTTCAAGACTATCTTTGGAGATACTGAAAG 826 |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 721 AGAGCATCAGGAGAGGAATTGGGGGAGGTTTTT-AAGACCATCTTTGGAGATACGGAAAG 779 Query 827 AGGCGT-GAAAACTATAAGTTTAGAGAGTGCCACCGAGTACATATTTACTCTGTTTTTGC 885 ||| | |||| |||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 780 AGGAGCAGAAA-CTATAAGTCTAGAGAGTGCGACCGAGTACATATTTACTCTGTTTTTGC 838 Query 886 TTGCTAACGAAACAACACCAGCGGTCCTTGCGGCTACAATAAAGCTCATAAGTGACCATC 945 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | | Sbjct 839 TTGCTAACGAAACAACACCAATGGTCCTTGCGGCTACAATAAAGCTCATAAGCGACAACC 898 Query 946 CTAAAGTGATGCAAGAGTTACAGAGAGAGCATGAAGGAATTGTCCGAGATAAGATTGAGA 1005 ||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 899 CTAAAGTCATGCAGGAGTTGCAAAGAGAACATGAAGGAATTGTCCGAGATAAGATTGAGA 958 Query 1006 AAAATGAGAAAGCTGACCTAACATGGGAAGACTACAAATCAATGACTTTTACCCA-GATG 1064 | |||||||| |||||| ||||||||||||||||||||||||||||||| ||| | |||| Sbjct 959 AGAATGAGAAGGCTGACTTAACATGGGAAGACTACAAATCAATGACTTTCACC-ATGATG 1017 Query 1065 GTGATAAATGAGTCGCTTAGGATCACAAGCACGGTACCGACGGTGCTTAGAATAATTGAT 1124 |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1018 GTGATACATGAGTCTCTTAGGATCACAAGCACGGTACCGACGATGCTTAGAATAATTGAT 1077 Query 1125 CATGAGTTTCAA-TTTGGTGAGTATACAATTCCAGCAGGTTGGATCTTTATGGGTTATCC 1183 | |||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1078 CGTGAGTT-CAAATTTGGTGATTATACAATTCCAGCTGGTTGGATCTTTATGGGTTATCC 1136 Query 1184 TTATGTGCATTTCAATGCAGAAAAGTATGATGACCCTTTAGCATTTAATCCATGGCGCTG 1243 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1137 TTATGTGCATTTCAATCCAGAAAAATATGATGACCCTTTAGCATTTAATCCATGGCGCTG 1196 Query 1244 GAAGGGAAAAGACTTGAGCGCGATTGTCTCCAGGACTTACATTCCCTTTGGCTCGGGTTC 1303 |||||||||||| |||||||| | ||||||||||||||| ||||||||||||| ||||| Sbjct 1197 GAAGGGAAAAGATTTGAGCGCAAACGTCTCCAGGACTTACCTTCCCTTTGGCTCTGGTTC 1256 Query 1304 TAGACTATGTGTAGGAGCTGAATTTGTTAAGTTGAAGATGGCCATTTTTATCCATCATTT 1363 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1257 TAGACTATGTGTAGGAGCTGAATTCGTTAAGTTGCAGATGGCCATTTTTATCCATCATTT 1316 Query 1364 GTCTAGATACAGGTGGTCAATGAAGACAGAGACTACTTTACTTCGAAGATTTGTACTTAT 1423 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1317 GTCTAGATACAGGTGGTCAATGAAGACAGAGACTCCTGTACTTCGAAGATTTGTACTTAT 1376 Query 1424 ACTTCCACGTGGATCAGATGTTCAAATCTTAGAAGACACCAAAGCTAAATAACTTTGT 1481 |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||| Sbjct 1377 GCTTCCACGTGGATCAGATGTTCAAATCTCAGAAGACACCAAAACTGGATAACTCTGT 1434 > Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 Length=1443 Score = 904 bits (489), Expect = 0.0 Identities = 1151/1460 (79%), Gaps = 88/1460 (6%) Strand=Plus/Plus Query 48 ATGGTAGATCTTTATGAGTTCTGGGCT-GTGATAGTTTCACTCATAGTGGTGAAGCTGTG 106 ||||||||| ||||| | | | || | ||||||||||||||||||||||||||||| || Sbjct 1 ATGGTAGATGTTTATAACCTAT-GGATAGTGATAGTTTCACTCATAGTGGTGAAGCTATG 59 Query 107 TCACTCGATCTATCAGTGGAGGAATCCAAAAAGTAATGGAGAACTTCCTCCAGG-ATCTA 165 ||| | ||||||||| ||||| |||||||| |||||||| ||||||||||||| | | | Sbjct 60 TCATTTGATCTATCAATGGAGCAATCCAAAGTGTAATGGAAAACTTCCTCCAGGGA-CAA 118 Query 166 TGGGTTATCCAATCATTGGAGAGACT-TTCGAGTTCATGAAGCCTCATGACGCTATTCAG 224 |||||||||| ||||||||||| ||| || ||||||||||||| |||||||||| ||||| Sbjct 119 TGGGTTATCCGATCATTGGAGAAACTATT-GAGTTCATGAAGCATCATGACGCTCTTCAG 177 Query 225 TTACCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTA 284 || |||||||| | ||| ||| ||| |||||||||||||| |||||| ||||||||||| Sbjct 178 TTTTCAACATTCCTCAAGAAGAGAGTCCTCAGACATGGACCGGTTTTTCGGACAAGCTTA 237 Query 285 TTTGGAGGAAAAGTTATAATTTCGACTG-ATATTGGGTTGAACATGGAGATAGCAAAGAC 343 || ||||| ||||||||||| || | || ||| || ||||| |||||||| |||||||| Sbjct 238 TTCGGAGGCAAAGTTATAATCTCAA-TGGATAATGAATTGAATATGGAGATGGCAAAGAC 296 Query 344 AAATCATATTCCTGGTATGC-CGAAGAGCTTAGCGCGGCTATTTGG-G--G-CAAACAAC 398 ||||| || ||||||||| | | |||||| |||| |||||||||| | | ||| |||| Sbjct 297 AAATCGTACTCCTGGTAT-CACAAAGAGCATAGCAAGGCTATTTGGAGAAGACAA-CAAC 354 Query 399 TTGTTCGTG-A-AT-A-AG-GATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTT 453 ||||| | | | | || | | | |||||||||| ||| | |||||||| ||| | | Sbjct 355 TTGTTTTTACAGAGCACAGAG-TCC-CATAAACATGTCCGGAACTTGACAATCCAAATGT 412 Query 454 TAGGTTCGCAA-GCTTTGAAATTAAGAATGCTTCAAGACATCGATTTCTTGGTTCGCACA 512 | ||||| ||| | ||| ||||| || || | || |||| ||| |||||| ||||||| Sbjct 413 TGGGTTCACAAAG-TTTAAAATTGAGGATAATGGAAAACATTGATCTCTTGGCTCGCACA 471 Query 513 CACCTG-AAGGAAGGAGCTAGGAAAGGCAGC-CTTGACATCAAGGAAACGACAAGCAAGA 570 ||| || ||| ||||| ||||||| ||| | |||||| |||||||||| |||||||| | Sbjct 472 CACATGGAAG-AAGGATCTAGGAATGGCT-CACTTGACGTCAAGGAAACAACAAGCAAAA 529 Query 571 TCATTA-TTGAATGTCTTGCGAAGAAAGTAATGGGGGAGATGGAACCAGATGCAGC-AAA 628 || ||| ||||||| ||||| || ||||| ||||| |||||||||||||| || || ||| Sbjct 530 TC-TTAATTGAATGCCTTGCAAATAAAGTTATGGGCGAGATGGAACCAGAGGCGGCGAAA 588 Query 629 AGAACTCAC-ACTCTGTTGGACAT-TTTTCCCAAG-GGAATGGTTT-GGATTCGCTTGGA 684 | ||||| | | | ||||||| || |||||| | | || |||||| || | | ||| | Sbjct 589 A-AACTCGCCA-TATGTTGGAGATATTTTCCGA-GTGGC-TGGTTTCGGCTCC-CTTTCA 643 Query 685 A-TATCCCGGGGACTGGTGTCTATCGA-ATGGTGAAGGCAAGAAATCGGATGATGAAGGT 742 | | ||| ||| | ||||||||| | ||| ||||||| ||||| |||||| |||| | Sbjct 644 ACTTTCCTGGGT-CAGGTGTCTATA-ATATGATGAAGGCGAGAAAAAGGATGAAGAAGTT 701 Query 743 ACTAAAGGAG-ACGGTACTT-AAGAAAAGAGCATCAGGAGAGGAATTGGGGGACTT-TTT 799 ||||||||| | | | || ||||| |||| | | |||||||| || ||||| || ||| Sbjct 702 GCTAAAGGAGGAAG-TG-TTGAAGAAGAGAGAAGCCGGAGAGGAGTTTGGGGAGTTCTTT 759 Query 800 CAAGACTATCTTTGGAGATACT-GAAAGAGGCGTGAAAACTATAAGTTTAGAGAGTGCCA 858 ||||| || |||||||| | | ||| ||| | |||| || || | |||| | | Sbjct 760 -AAGACCATATTTGGAGAAA-TAGAAGGAGAAAAGGAAACAATGAGCATGGAGAATTTGA 817 Query 859 CCGAGTACATATTTACTCTGT-TTT-TGCTTGCTAACGAAACAACACCAGCGG-TCCTTG 915 |||||||||| ||| || | ||| || ||||||| |||||||| ||| ||| | |||| Sbjct 818 TTGAGTACATATATAC-CT-TCTTTGTGATTGCTAATGAAACAACGCCA-CGGATTCTTG 874 Query 916 CGGCTACAATAAAGCTCATAAGTGACCATCCTAAAGTGATGCAAGAG-TTACAGAGAGAG 974 |||| || | |||||||||||||| |||||||||| | ||||||| || ||||||||| Sbjct 875 CGGCGACCGTGAAGCTCATAAGTGAAAATCCTAAAGTCAAGCAAGAGCTT-CAGAGAGAG 933 Query 975 CATG-AAGGAATTGTCCGAGATAAGAT-TGAGAAAAATGAGAAAGCTGACCTAACATGGG 1032 |||| || |||| | || ||||| | |||||| ||||| | || ||||||||||| Sbjct 934 CATGCAAT-AATTTTTGGAAATAAG-TCTGAGAA---TGAGA--G-TGGCCTAACATGGG 985 Query 1033 AAGACTACAAATCAATGACTTTTACCCAGATGGTGATAAATGAGTCGCTTAGGATCACAA 1092 ||||||| ||||| ||||| || ||| | |||||||| |||||||| ||||||||| ||| Sbjct 986 AAGACTATAAATCGATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAA 1045 Query 1093 GCACGGTACC-G-ACGGTGCTTAGAATAAT-TGATCATGAGTTTCAATTTGGTGAGTATA 1149 ||| || || | | | ||||||| || ||||||||| || || | ||||| |||| Sbjct 1046 CCACAGTGCCTGTAAT-T-CTTAGAA-AACCTGATCATGACATTGAAGTCGGTGATTATA 1102 Query 1150 CAATTCCAGCAGGTTGGATCTTTATGGGTTATCCTTATGTGC--ATTTCAATGCAGAAAA 1207 |||||||||| ||||||| ||| ||||| |||||| | |||| ||||| || || |||| Sbjct 1103 CAATTCCAGCGGGTTGGAACTTCATGGGCTATCCT-A-GTGCCCATTTCGATCCAAAAAA 1160 Query 1208 GTATGATGACCCTTTAGCATTTAATCCATGGCGCTGGAAGGGAAAAGACTTG-AGCGCGA 1266 ||| || || ||||||| ||||||||| ||||| |||||||||||||||||| | ||||| Sbjct 1161 GTACGAGGATCCTTTAGTATTTAATCCGTGGCGTTGGAAGGGAAAAGACTTGGA-CGCGA 1219 Query 1267 TTGTCTCCAGGACTTACATTCCCTTTGGCTCGGGTTCTAGACTATGTGTAGGAGCTGAAT 1326 | ||||||| || ||||||||||||||| | ||| ||||||| ||||| || ||| | | Sbjct 1220 TAGTCTCCAAGAATTACATTCCCTTTGGAGCTGGTCCTAGACTTTGTGTTGGGGCTTACT 1279 Query 1327 TTGTTAAGTTGAAGATGGCCATTTTTATCCATCATTTGTCTAGATACAGGTGGTCAATGA 1386 ||| |||| || ||||||||||||| | || ||||||| |||||| ||||||||||||| Sbjct 1280 TTGCTAAGCTGTTGATGGCCATTTTTCTACACCATTTGTGTAGATATAGGTGGTCAATGA 1339 Query 1387 A-GACAGAGA-CTACTTTA-CTTCGAAGATTTGTACTTATACTTCCACGTGGATCAGATG 1443 | | ||||| | || || || ||||| | | | ||||| |||| ||||||| |||| Sbjct 1340 AAG-CAGAGGTC-ACAGTAACT-CGAAGCTATATGCTTATGTTTCCTCGTGGATGTGATG 1396 Query 1444 TTCAAATCTTAGAAGACACC 1463 ||||| ||| | |||||||| Sbjct 1397 TTCAATTCTCAAAAGACACC 1416 > Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418 Length=1311 Score = 466 bits (252), Expect = 2e-130 Identities = 423/502 (84%), Gaps = 25/502 (5%) Strand=Plus/Plus Query 889 CTAACGAAACAACACCAG----C--GG-TCCTTGCGGCTACAATAAAGCTCATAAGTGAC 941 |||||||||||||||||| | || |||||||||||||| ||||||||||||| ||| Sbjct 802 CTAACGAAACAACACCAGTCACCAGGGATCCTTGCGGCTACAGTAAAGCTCATAAGCGAC 861 Query 942 CATCCTAAAG-TGATGCAAGAGTT-ACAGAGAGAGCATGAAGGAATTGTCCGAGATAAGA 999 || ||||||| || || ||||||| | | | ||||||||| |||||||| |||| ||||| Sbjct 862 CACCCTAAAGTTG-TGGAAGAGTTGA-ATAAAGAGCATGAGGGAATTGTTCGAGGTAAGA 919 Query 1000 TTGAGAAAAATGAGAAAGCTGACCTAACATGGGAAGACTACAAATCAATGACTTTTACCC 1059 |||| || | | | |||| ||| ||||||||||||||||||||||||||||| || | Sbjct 920 CTGAG---AA-G-G-AGGCTGGCCTTACATGGGAAGACTACAAATCAATGACTTTCACAC 973 Query 1060 AGATGGTGATAAATGAGTCGCTTAGGATCACAAGCACGGTACCGACGGTGCTTAGAATAA 1119 | | |||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 974 ACAAGGTGATTAATGAGTCACTTAGGATCACAAGCACGGCGCCGACTGTGCTTAGAATAA 1033 Query 1120 TTGATCATGAGTTTCAAT-TTGGTGAGTATACAATTCCAGCAGGTTGGATCTTTATGGGT 1178 ||| ||||| |||| | ||||||| |||||||||||||| ||||||||||| ||||| Sbjct 1034 CTGACCATGA-TTTCCAGGTTGGTGATTATACAATTCCAGCTGGTTGGATCTTCATGGGC 1092 Query 1179 TATCCTTATGTGCATTTCAATGC-AGAAAAGTATGATGACCCTTTAGCATTTAATCCATG 1237 |||||| |||| ||||||| | | | |||| || ||||||||||| | |||||||||||| Sbjct 1093 TATCCTAATGTACATTTCAGTCCCAAAAAA-TACGATGACCCTTTGGTATTTAATCCATG 1151 Query 1238 GCGCTGGAAGGGAAAAGACTTGAGCGCGATTGTCTCCAGGACTTACATTCCCTTTGGCT- 1296 ||| |||||| || ||||||||||| | || |||||| |||||||||||||||||| | Sbjct 1152 GCGTTGGAAGAGAGAAGACTTGAGCTCAATCCTCTCCAAGACTTACATTCCCTTTGG-TG 1210 Query 1297 CGGGTTCTAGACTATGTGTAGGAGCTGAATTTGTTAAG-TTGAAGATGGCCATTTTTATC 1355 | ||||||||||||||||| |||||||| || | |||| || || ||||||||||||||| Sbjct 1211 CTGGTTCTAGACTATGTGTGGGAGCTGAGTTCGCTAAGCTTCAA-ATGGCCATTTTTATC 1269 Query 1356 CATCATTTGTCTAGATACAGGT 1377 |||||| ||| ||||||||||| Sbjct 1270 CATCATATGTTTAGATACAGGT 1291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58735157790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5