BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15396.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2 2117 0.0
Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 904 0.0
Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418 466 2e-130
> Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2
Length=1459
Score = 2117 bits (1146), Expect = 0.0
Identities = 1342/1438 (93%), Gaps = 8/1438 (1%)
Strand=Plus/Plus
Query 48 ATGGTAGATCTTTATGAGTTCTGGGCTGTGATAGTTTCACTCATAGTGGTGAAGCTGTGT 107
|||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTAGAGGTTTATGAGTTGTGGGCTGTGGTAGTTTCACTCATAGTGGTGAAGCTGTGT 60
Query 108 CACTCGATCTATCAGTGGAGGAATCCAAAAAGTAATGGAGAACTTCCTCCAGGATCTATG 167
|| | ||||||||||||||| ||||| || ||||||||| |||||||||||||||| |||
Sbjct 61 CATTGGATCTATCAGTGGAGAAATCCGAAGAGTAATGGAAAACTTCCTCCAGGATCGATG 120
Query 168 GGTTATCCAATCATTGGAGAGACTTTCGAGTTCATGAAGCCTCATGACGCTATTCAGTTA 227
|||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 GGTTTTCCAGTCATCGGAGAGACTTTCGAGTTCATGAAGCCTCATGATGCTATTCAGATA 180
Query 228 CCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTATTT 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTATTT 240
Query 288 GGAGGAAAAGTTATAATTTCGACTGATATTGGGTTGAACATGGAGATAGCAAAGACAAAT 347
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GGAGGCAAAGTTATAATTTCCACTGATATTGGACTGAACATGGAGATAGCAAAGACAAAT 300
Query 348 CATATTCCTGGTATGCCGAAGAGCTTAGCGCGGCTATTTGGGGCAAACAACTTGTTCGTG 407
|||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 301 CATATTCCCGGTATGCCGAAGAGCTTAGTGCGGCTATTTGGGGCAAATAACTTGTTTGTG 360
Query 408 AATAAGGATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTTTAGGTTCGCAAGCT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATAAGGATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTTTAGGTTCGCAAGCT 420
Query 468 TTGAAATTAAGAATGCTTCAAGACATCGATTTCTTGGTTCGCACACACCTGAAGGAAGGA 527
||||||||||| ||| |||| ||||| |||||||||| |||||||||| |||||||||||
Sbjct 421 TTGAAATTAAGGATGATTCAGGACATTGATTTCTTGGCTCGCACACACATGAAGGAAGGA 480
Query 528 GCTAGGAAAGGCAGCCTTGACATCAAGGAAACGACAAGCAAGATCATTATTGAATGTCTT 587
||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGGAAAGGTTGTCTTGACGTGAAGGAAACGACAAGCAAGATCATTATTGAATGTCTT 540
Query 588 GCGAAGAAAGTAATGGGGGAGATGGAACCAGATGCAGCAAAAGAACTCACACTCTGTTGG 647
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GCGAAGAAAGTAATGGGGGAGATGGAACCAGAGGCAGCAAAAGAACTCACACTCTGTTGG 600
Query 648 ACATTTTTCCCAAGGGAATGGTTTGGATTCGCTTGGAATATCCCGGGGACTGGTGTCTAT 707
||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 601 ACATTTTTCCCAACGGAATGGTTTCGATTCGCTTGGAATATCCCGGGGACTGGAGTTTAT 660
Query 708 CGAATGGTGAAGGCAAGAAATCGGATGATGAAGGTACTAAAGGAGACGGTACTTAAGAAA 767
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 661 CGAATGGTGAAGGCAAGAAATCGGATGATAAAGGTACTAAAAGAGACGGTACTTAAGAAA 720
Query 768 AGAGCATCAGGAGAGGAATTGGGGGAC-TTTTTCAAGACTATCTTTGGAGATACTGAAAG 826
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 721 AGAGCATCAGGAGAGGAATTGGGGGAGGTTTTT-AAGACCATCTTTGGAGATACGGAAAG 779
Query 827 AGGCGT-GAAAACTATAAGTTTAGAGAGTGCCACCGAGTACATATTTACTCTGTTTTTGC 885
||| | |||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 780 AGGAGCAGAAA-CTATAAGTCTAGAGAGTGCGACCGAGTACATATTTACTCTGTTTTTGC 838
Query 886 TTGCTAACGAAACAACACCAGCGGTCCTTGCGGCTACAATAAAGCTCATAAGTGACCATC 945
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |
Sbjct 839 TTGCTAACGAAACAACACCAATGGTCCTTGCGGCTACAATAAAGCTCATAAGCGACAACC 898
Query 946 CTAAAGTGATGCAAGAGTTACAGAGAGAGCATGAAGGAATTGTCCGAGATAAGATTGAGA 1005
||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 899 CTAAAGTCATGCAGGAGTTGCAAAGAGAACATGAAGGAATTGTCCGAGATAAGATTGAGA 958
Query 1006 AAAATGAGAAAGCTGACCTAACATGGGAAGACTACAAATCAATGACTTTTACCCA-GATG 1064
| |||||||| |||||| ||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 959 AGAATGAGAAGGCTGACTTAACATGGGAAGACTACAAATCAATGACTTTCACC-ATGATG 1017
Query 1065 GTGATAAATGAGTCGCTTAGGATCACAAGCACGGTACCGACGGTGCTTAGAATAATTGAT 1124
|||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 GTGATACATGAGTCTCTTAGGATCACAAGCACGGTACCGACGATGCTTAGAATAATTGAT 1077
Query 1125 CATGAGTTTCAA-TTTGGTGAGTATACAATTCCAGCAGGTTGGATCTTTATGGGTTATCC 1183
| |||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1078 CGTGAGTT-CAAATTTGGTGATTATACAATTCCAGCTGGTTGGATCTTTATGGGTTATCC 1136
Query 1184 TTATGTGCATTTCAATGCAGAAAAGTATGATGACCCTTTAGCATTTAATCCATGGCGCTG 1243
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1137 TTATGTGCATTTCAATCCAGAAAAATATGATGACCCTTTAGCATTTAATCCATGGCGCTG 1196
Query 1244 GAAGGGAAAAGACTTGAGCGCGATTGTCTCCAGGACTTACATTCCCTTTGGCTCGGGTTC 1303
|||||||||||| |||||||| | ||||||||||||||| ||||||||||||| |||||
Sbjct 1197 GAAGGGAAAAGATTTGAGCGCAAACGTCTCCAGGACTTACCTTCCCTTTGGCTCTGGTTC 1256
Query 1304 TAGACTATGTGTAGGAGCTGAATTTGTTAAGTTGAAGATGGCCATTTTTATCCATCATTT 1363
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1257 TAGACTATGTGTAGGAGCTGAATTCGTTAAGTTGCAGATGGCCATTTTTATCCATCATTT 1316
Query 1364 GTCTAGATACAGGTGGTCAATGAAGACAGAGACTACTTTACTTCGAAGATTTGTACTTAT 1423
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1317 GTCTAGATACAGGTGGTCAATGAAGACAGAGACTCCTGTACTTCGAAGATTTGTACTTAT 1376
Query 1424 ACTTCCACGTGGATCAGATGTTCAAATCTTAGAAGACACCAAAGCTAAATAACTTTGT 1481
|||||||||||||||||||||||||||| ||||||||||||| || |||||| |||
Sbjct 1377 GCTTCCACGTGGATCAGATGTTCAAATCTCAGAAGACACCAAAACTGGATAACTCTGT 1434
> Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576
Length=1443
Score = 904 bits (489), Expect = 0.0
Identities = 1151/1460 (79%), Gaps = 88/1460 (6%)
Strand=Plus/Plus
Query 48 ATGGTAGATCTTTATGAGTTCTGGGCT-GTGATAGTTTCACTCATAGTGGTGAAGCTGTG 106
||||||||| ||||| | | | || | ||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGTAGATGTTTATAACCTAT-GGATAGTGATAGTTTCACTCATAGTGGTGAAGCTATG 59
Query 107 TCACTCGATCTATCAGTGGAGGAATCCAAAAAGTAATGGAGAACTTCCTCCAGG-ATCTA 165
||| | ||||||||| ||||| |||||||| |||||||| ||||||||||||| | | |
Sbjct 60 TCATTTGATCTATCAATGGAGCAATCCAAAGTGTAATGGAAAACTTCCTCCAGGGA-CAA 118
Query 166 TGGGTTATCCAATCATTGGAGAGACT-TTCGAGTTCATGAAGCCTCATGACGCTATTCAG 224
|||||||||| ||||||||||| ||| || ||||||||||||| |||||||||| |||||
Sbjct 119 TGGGTTATCCGATCATTGGAGAAACTATT-GAGTTCATGAAGCATCATGACGCTCTTCAG 177
Query 225 TTACCAACATTCGTGAAGGAGAAAGTACTCAGACATGGACCAGTTTTTAGGACAAGCTTA 284
|| |||||||| | ||| ||| ||| |||||||||||||| |||||| |||||||||||
Sbjct 178 TTTTCAACATTCCTCAAGAAGAGAGTCCTCAGACATGGACCGGTTTTTCGGACAAGCTTA 237
Query 285 TTTGGAGGAAAAGTTATAATTTCGACTG-ATATTGGGTTGAACATGGAGATAGCAAAGAC 343
|| ||||| ||||||||||| || | || ||| || ||||| |||||||| ||||||||
Sbjct 238 TTCGGAGGCAAAGTTATAATCTCAA-TGGATAATGAATTGAATATGGAGATGGCAAAGAC 296
Query 344 AAATCATATTCCTGGTATGC-CGAAGAGCTTAGCGCGGCTATTTGG-G--G-CAAACAAC 398
||||| || ||||||||| | | |||||| |||| |||||||||| | | ||| ||||
Sbjct 297 AAATCGTACTCCTGGTAT-CACAAAGAGCATAGCAAGGCTATTTGGAGAAGACAA-CAAC 354
Query 399 TTGTTCGTG-A-AT-A-AG-GATACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTT 453
||||| | | | | || | | | |||||||||| ||| | |||||||| ||| | |
Sbjct 355 TTGTTTTTACAGAGCACAGAG-TCC-CATAAACATGTCCGGAACTTGACAATCCAAATGT 412
Query 454 TAGGTTCGCAA-GCTTTGAAATTAAGAATGCTTCAAGACATCGATTTCTTGGTTCGCACA 512
| ||||| ||| | ||| ||||| || || | || |||| ||| |||||| |||||||
Sbjct 413 TGGGTTCACAAAG-TTTAAAATTGAGGATAATGGAAAACATTGATCTCTTGGCTCGCACA 471
Query 513 CACCTG-AAGGAAGGAGCTAGGAAAGGCAGC-CTTGACATCAAGGAAACGACAAGCAAGA 570
||| || ||| ||||| ||||||| ||| | |||||| |||||||||| |||||||| |
Sbjct 472 CACATGGAAG-AAGGATCTAGGAATGGCT-CACTTGACGTCAAGGAAACAACAAGCAAAA 529
Query 571 TCATTA-TTGAATGTCTTGCGAAGAAAGTAATGGGGGAGATGGAACCAGATGCAGC-AAA 628
|| ||| ||||||| ||||| || ||||| ||||| |||||||||||||| || || |||
Sbjct 530 TC-TTAATTGAATGCCTTGCAAATAAAGTTATGGGCGAGATGGAACCAGAGGCGGCGAAA 588
Query 629 AGAACTCAC-ACTCTGTTGGACAT-TTTTCCCAAG-GGAATGGTTT-GGATTCGCTTGGA 684
| ||||| | | | ||||||| || |||||| | | || |||||| || | | ||| |
Sbjct 589 A-AACTCGCCA-TATGTTGGAGATATTTTCCGA-GTGGC-TGGTTTCGGCTCC-CTTTCA 643
Query 685 A-TATCCCGGGGACTGGTGTCTATCGA-ATGGTGAAGGCAAGAAATCGGATGATGAAGGT 742
| | ||| ||| | ||||||||| | ||| ||||||| ||||| |||||| |||| |
Sbjct 644 ACTTTCCTGGGT-CAGGTGTCTATA-ATATGATGAAGGCGAGAAAAAGGATGAAGAAGTT 701
Query 743 ACTAAAGGAG-ACGGTACTT-AAGAAAAGAGCATCAGGAGAGGAATTGGGGGACTT-TTT 799
||||||||| | | | || ||||| |||| | | |||||||| || ||||| || |||
Sbjct 702 GCTAAAGGAGGAAG-TG-TTGAAGAAGAGAGAAGCCGGAGAGGAGTTTGGGGAGTTCTTT 759
Query 800 CAAGACTATCTTTGGAGATACT-GAAAGAGGCGTGAAAACTATAAGTTTAGAGAGTGCCA 858
||||| || |||||||| | | ||| ||| | |||| || || | |||| | |
Sbjct 760 -AAGACCATATTTGGAGAAA-TAGAAGGAGAAAAGGAAACAATGAGCATGGAGAATTTGA 817
Query 859 CCGAGTACATATTTACTCTGT-TTT-TGCTTGCTAACGAAACAACACCAGCGG-TCCTTG 915
|||||||||| ||| || | ||| || ||||||| |||||||| ||| ||| | ||||
Sbjct 818 TTGAGTACATATATAC-CT-TCTTTGTGATTGCTAATGAAACAACGCCA-CGGATTCTTG 874
Query 916 CGGCTACAATAAAGCTCATAAGTGACCATCCTAAAGTGATGCAAGAG-TTACAGAGAGAG 974
|||| || | |||||||||||||| |||||||||| | ||||||| || |||||||||
Sbjct 875 CGGCGACCGTGAAGCTCATAAGTGAAAATCCTAAAGTCAAGCAAGAGCTT-CAGAGAGAG 933
Query 975 CATG-AAGGAATTGTCCGAGATAAGAT-TGAGAAAAATGAGAAAGCTGACCTAACATGGG 1032
|||| || |||| | || ||||| | |||||| ||||| | || |||||||||||
Sbjct 934 CATGCAAT-AATTTTTGGAAATAAG-TCTGAGAA---TGAGA--G-TGGCCTAACATGGG 985
Query 1033 AAGACTACAAATCAATGACTTTTACCCAGATGGTGATAAATGAGTCGCTTAGGATCACAA 1092
||||||| ||||| ||||| || ||| | |||||||| |||||||| ||||||||| |||
Sbjct 986 AAGACTATAAATCGATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAA 1045
Query 1093 GCACGGTACC-G-ACGGTGCTTAGAATAAT-TGATCATGAGTTTCAATTTGGTGAGTATA 1149
||| || || | | | ||||||| || ||||||||| || || | ||||| ||||
Sbjct 1046 CCACAGTGCCTGTAAT-T-CTTAGAA-AACCTGATCATGACATTGAAGTCGGTGATTATA 1102
Query 1150 CAATTCCAGCAGGTTGGATCTTTATGGGTTATCCTTATGTGC--ATTTCAATGCAGAAAA 1207
|||||||||| ||||||| ||| ||||| |||||| | |||| ||||| || || ||||
Sbjct 1103 CAATTCCAGCGGGTTGGAACTTCATGGGCTATCCT-A-GTGCCCATTTCGATCCAAAAAA 1160
Query 1208 GTATGATGACCCTTTAGCATTTAATCCATGGCGCTGGAAGGGAAAAGACTTG-AGCGCGA 1266
||| || || ||||||| ||||||||| ||||| |||||||||||||||||| | |||||
Sbjct 1161 GTACGAGGATCCTTTAGTATTTAATCCGTGGCGTTGGAAGGGAAAAGACTTGGA-CGCGA 1219
Query 1267 TTGTCTCCAGGACTTACATTCCCTTTGGCTCGGGTTCTAGACTATGTGTAGGAGCTGAAT 1326
| ||||||| || ||||||||||||||| | ||| ||||||| ||||| || ||| | |
Sbjct 1220 TAGTCTCCAAGAATTACATTCCCTTTGGAGCTGGTCCTAGACTTTGTGTTGGGGCTTACT 1279
Query 1327 TTGTTAAGTTGAAGATGGCCATTTTTATCCATCATTTGTCTAGATACAGGTGGTCAATGA 1386
||| |||| || ||||||||||||| | || ||||||| |||||| |||||||||||||
Sbjct 1280 TTGCTAAGCTGTTGATGGCCATTTTTCTACACCATTTGTGTAGATATAGGTGGTCAATGA 1339
Query 1387 A-GACAGAGA-CTACTTTA-CTTCGAAGATTTGTACTTATACTTCCACGTGGATCAGATG 1443
| | ||||| | || || || ||||| | | | ||||| |||| ||||||| ||||
Sbjct 1340 AAG-CAGAGGTC-ACAGTAACT-CGAAGCTATATGCTTATGTTTCCTCGTGGATGTGATG 1396
Query 1444 TTCAAATCTTAGAAGACACC 1463
||||| ||| | ||||||||
Sbjct 1397 TTCAATTCTCAAAAGACACC 1416
> Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418
Length=1311
Score = 466 bits (252), Expect = 2e-130
Identities = 423/502 (84%), Gaps = 25/502 (5%)
Strand=Plus/Plus
Query 889 CTAACGAAACAACACCAG----C--GG-TCCTTGCGGCTACAATAAAGCTCATAAGTGAC 941
|||||||||||||||||| | || |||||||||||||| ||||||||||||| |||
Sbjct 802 CTAACGAAACAACACCAGTCACCAGGGATCCTTGCGGCTACAGTAAAGCTCATAAGCGAC 861
Query 942 CATCCTAAAG-TGATGCAAGAGTT-ACAGAGAGAGCATGAAGGAATTGTCCGAGATAAGA 999
|| ||||||| || || ||||||| | | | ||||||||| |||||||| |||| |||||
Sbjct 862 CACCCTAAAGTTG-TGGAAGAGTTGA-ATAAAGAGCATGAGGGAATTGTTCGAGGTAAGA 919
Query 1000 TTGAGAAAAATGAGAAAGCTGACCTAACATGGGAAGACTACAAATCAATGACTTTTACCC 1059
|||| || | | | |||| ||| ||||||||||||||||||||||||||||| || |
Sbjct 920 CTGAG---AA-G-G-AGGCTGGCCTTACATGGGAAGACTACAAATCAATGACTTTCACAC 973
Query 1060 AGATGGTGATAAATGAGTCGCTTAGGATCACAAGCACGGTACCGACGGTGCTTAGAATAA 1119
| | |||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 974 ACAAGGTGATTAATGAGTCACTTAGGATCACAAGCACGGCGCCGACTGTGCTTAGAATAA 1033
Query 1120 TTGATCATGAGTTTCAAT-TTGGTGAGTATACAATTCCAGCAGGTTGGATCTTTATGGGT 1178
||| ||||| |||| | ||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1034 CTGACCATGA-TTTCCAGGTTGGTGATTATACAATTCCAGCTGGTTGGATCTTCATGGGC 1092
Query 1179 TATCCTTATGTGCATTTCAATGC-AGAAAAGTATGATGACCCTTTAGCATTTAATCCATG 1237
|||||| |||| ||||||| | | | |||| || ||||||||||| | ||||||||||||
Sbjct 1093 TATCCTAATGTACATTTCAGTCCCAAAAAA-TACGATGACCCTTTGGTATTTAATCCATG 1151
Query 1238 GCGCTGGAAGGGAAAAGACTTGAGCGCGATTGTCTCCAGGACTTACATTCCCTTTGGCT- 1296
||| |||||| || ||||||||||| | || |||||| |||||||||||||||||| |
Sbjct 1152 GCGTTGGAAGAGAGAAGACTTGAGCTCAATCCTCTCCAAGACTTACATTCCCTTTGG-TG 1210
Query 1297 CGGGTTCTAGACTATGTGTAGGAGCTGAATTTGTTAAG-TTGAAGATGGCCATTTTTATC 1355
| ||||||||||||||||| |||||||| || | |||| || || |||||||||||||||
Sbjct 1211 CTGGTTCTAGACTATGTGTGGGAGCTGAGTTCGCTAAGCTTCAA-ATGGCCATTTTTATC 1269
Query 1356 CATCATTTGTCTAGATACAGGT 1377
|||||| ||| |||||||||||
Sbjct 1270 CATCATATGTTTAGATACAGGT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5