BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15400.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493352 jgi|Araly1|493352|fgenesh2_kg.7__2785__AT4G15400.1 1989 0.0
> Ahg493352 jgi|Araly1|493352|fgenesh2_kg.7__2785__AT4G15400.1
Length=1507
Score = 1989 bits (1077), Expect = 0.0
Identities = 1332/1455 (92%), Gaps = 17/1455 (1%)
Strand=Plus/Plus
Query 7 TCAATACTTCAATCTTGTAACCCGTTGACTTTTAAAGGAAGACGATGGAAGCGAAGCTAG 66
||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCATTACCTCAATCTTGTTACCCGTTGACTTTTAAGGGAAGACGATGGAAGCGAAGCTAG 60
Query 67 AGGTGACCGGGAAAGAAGTGATCAAACCTGCTTCACCATCACCTCGTGATCGCCTTCAGC 126
||||| | | || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AGGTGGCTGCGAGAGAAGTGATCAAACCTGCTTCACCATCACCTCGTGATCGCCTTCAAC 120
Query 127 TCTCTATCCTTGATCTCTATTGTCCTGGAATCTACGTGTCGACGATCTTCTTCTACGATC 186
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTATCCTCGATCTCTATTGTCCCGCAATCTACGTGTCGACGATCTTCTTCTACGATC 180
Query 187 TC-ATCACCGA-GTCCTCGGAGGTTTTCTCGGAAAATCTGAAACTCTCTCTGTCCGAGAC 244
|| || | | | |||| |||| |||| ||||||||||||||| |||||||||||||||
Sbjct 181 TCGAT-AAC-ATGTCCCCGGAAATTTTGTCGGAAAATCTGAAAAGCTCTCTGTCCGAGAC 238
Query 245 TCTCTCACGCTTCTATCCACTAGCTGGACGAATAGAAGGCCTTTCCATCAGCTGTAACGA 304
| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 239 TTTGTCACGCTTCTATCCACTGGCTGGACGAATAGAAGGCGTTTCCATCAGCTGTAACGA 298
Query 305 CGAAGGAGCCGTCTTCACCGAGGCACGCACCGATCTCCTTCTT-CCTGATTTCCTTAGAA 363
||||||||||| | ||||||||| |||||| |||||||| || ||||||||||| ||||
Sbjct 299 TGAAGGAGCCGTGTACACCGAGGCTCGCACCAATCTCCTT-TTACCTGATTTCCTGAGAA 357
Query 364 ACCTCAACACTGACTCCCTGTCGGGATTCCTCCCGACACTAGCTGCTGGAGAATCTCCAG 423
||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 358 ACCTCAACACTGACTGCCTGTCGGGATTCCTCCCGACAATAGCCGCTGGAGATTCTCCAG 417
Query 424 CGGCCTGGCCGTTGTTGAGTGTCAAGGTCACTTTCTTCGGGTCTGGATCAGGAGTGGCGG 483
|||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 418 CGGCTTGGCCCTTGTTGAGTGTCAAGGTCACTTTCTTCGGGTCGGGATCTGGGGTGGCGG 477
Query 484 TTTCTGTCTCTGTCTCTCACAAAATCTGTGATATAGCCTCATTGGTTACCTTTGTAAAAG 543
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 478 TTTCTGTCTCTGTCTCTCACAAAATCTGTGATGCAGCCTCATTGGTGACCTTTGTTAAAG 537
Query 544 ACTGGGCTACCACCACGGCCAAAGGGAAGTCAAACAGTACTATCGAGTTCGCTGAAACGA 603
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ACTGGGCTACCACTACGGCCAAAGGGAAGTCAAACAGTACTATTGAGTTCGCTGAAACGA 597
Query 604 CTATTTA---TCCTCCTCCTCCTTCTCATATGTATGAACAGTTCCCATCAACGGATTCCG 660
||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 598 CTATTTATCCTCCTCCTCCTCCTTCCCATATGTATTTAGAGTTCCCATCAACGGATTCCG 657
Query 661 ATTCTAACATCACAAGTAAATACGTACTCAAAAGATTCGTCTTCGAACCTTCTAAGATTG 720
||||||||||| ||| ||||| ||| |||||||||||||||||||||| |||||||| |
Sbjct 658 ATTCTAACATCGCAAATAAATGTGTAATCAAAAGATTCGTCTTCGAACCCTCTAAGATAG 717
Query 721 CTGAGCTGAAACACAAGGCCGCTAGCGAAAGCGTCCCTGTGCCTACACGTGTTGAAGCTA 780
||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 718 CTGAGCTCAGGCACAAGGCCGCTAGCGAAAGCGTTTCTGTACCTACACGTGTTGAAGCTA 777
Query 781 TCATGTCACTTATCTGGAGATGTGCTAGAAACTCCTCACGCTCTAACTTGTTAATTCCAA 840
||||||||||||| ||||||||||| ||||| |||||||||| ||||||| |||||||||
Sbjct 778 TCATGTCACTTATTTGGAGATGTGCCAGAAAATCCTCACGCTTTAACTTGGTAATTCCAA 837
Query 841 GGCAAGCCGTCATGTGGCAGGCCATGGACATT-CGACTTAGGATTCCATCTAGTGTTGCG 899
||||| | || |||||||||||||||||| || || |||||||||||||||| |||| |
Sbjct 838 GGCAAACAGTGATGTGGCAGGCCATGGAC-TTGCGGCTTAGGATTCCATCTAATGTTTTG 896
Query 900 CCAAAAGACGTGATTGGTAACCTACAAAGC-GGATTTTCTCTCAAGAAAGACGCGGAGAG 958
||| ||||||||||||| ||||||| || | ||||| |||||||||||||||||||||||
Sbjct 897 CCACAAGACGTGATTGGCAACCTAC-AATCAGGATTCTCTCTCAAGAAAGACGCGGAGAG 955
Query 959 CGAGTTTGAGATCCCTGAAATCGTGGCCACATTCAGGAAGAACAAAG-AGAGAGTCAACG 1017
||||||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||
Sbjct 956 CGAGTTTGAGATCCCCGAAATCGTGGCGGCATTCAGGAAGACCAAAGAAG-GAGTCAACG 1014
Query 1018 AGATGATCAAAGAGAGTCTTCAAGGCAATACAATTGGTCAGAGTTTGTTGAGTTTGATGG 1077
||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1015 AGATGATCAAAGAGAGTGTCCAAAGCAATACAACTGGTCAGAGTTTGTTGAGTTTGATGG 1074
Query 1078 CGGAAACTGTGTCAGAGTCAACGGAGATAGACCGATACATAATGTCTAGCTGGTGCAGAA 1137
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 CGGAAACAGTGTCAGAGTCAGCGGACATAGACCGATACATAATGTCTAGCTGGTGCAGAA 1134
Query 1138 AGCCTTTCTACGAGGTTGACTTCGGATCGGGTAGTCCGGTCTGGGTGGGATACGCGTCAC 1197
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 AGCCATTCTACGAGGTTGACTTCGGATCTGGTAGTCCGGTCTGGGTGGGATACGCGTCAC 1194
Query 1198 ATACCATTTACGACAACATGGTG-GGTGTCGTGTTGATTGATTCAAAAGAAGGTGATGGT 1256
|||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1195 ATACCAATTACGACAACATGGTGTGG-GTCATGTTGATTGATTCAAAAGAAGGTGATGGT 1253
Query 1257 GTAGAAGCATGGATAAGCTTACCTGAGGAAGACATGTCCGTGTTTGTCGATGACCAAGAG 1316
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1254 GTAGAAGCATGGATAAGCTTACCTGAGGAAGACATGTCTGTGTTTGTCGATGACCAAGAG 1313
Query 1317 TTGCTTGCTTATGCCGTCCTAAATCCCCCGGTCGTGGCATAAACAAGACTACTACCAATT 1376
|||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1314 TTGCTTGCTTATGCTGTCCTAAATCCCCCGGTCTTGACCTAAACAAGACTACTACCAATT 1373
Query 1377 GCTCTACGCTGGATTTAATTAATTATTGGCTTTCGCTTTTCGTTGTGATTTGAATAAAGT 1436
|||||| |||||||||| | |||| |||||||| || |||||||||||| ||||||||||
Sbjct 1374 GCTCTATGCTGGATTTACTAAATTCTTGGCTTTTGCGTTTCGTTGTGATCTGAATAAAGT 1433
Query 1437 GACCAATCATTTCAA 1451
|| || |||||||||
Sbjct 1434 GAACAGTCATTTCAA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5