BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15415.2
Length=2456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200 2279 0.0
Ahg930127 jgi|Araly1|930127|scaffold_302584.1 1219 0.0
> Ahg329973 jgi|Araly1|329973|fgenesh1_pm.C_scaffold_7002200
Length=2847
Score = 2279 bits (1234), Expect = 0.0
Identities = 1371/1439 (95%), Gaps = 2/1439 (0%)
Strand=Plus/Plus
Query 675 GCCTTCTTCGAAATCATCCGCATCGAATTCGAATGGAGCAAATGGAACTGTTATTGCTCC 734
|||| | |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1410 GCCTACATCGAAATCGTCAGCATCGAATTCGAATGGAGCAAATGGGACTGTTATTGCTCC 1469
Query 735 TTCTTCAACGAGCTCTAACAGAACCAATCAAGTCAATGGAGTTTATGAAGCATTGCCAAG 794
||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1470 TTCCTCAACAAGTTCTAACAGAACGAATCAAGTCAATGGGGTTTATGAAGCATTGCCAAA 1529
Query 795 CTTTAGAGATGTTCCTACCTCGGAGAAACCTAATCTGTTTATCAAGAAGTTGAGTATGTG 854
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1530 CTTTAGGGATGTTCCTAGCTCGGAGAAACCTAATCTGTTTATCAAGAAGTTGAGTTTGTG 1589
Query 855 TTGCGTTGTGTTCGACTTCAATGATCCGTCGAAGAATCTGAGAGAGAAAGAGATAAAGAG 914
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1590 TTGCGTTGTGTTCGACTTTAGTGATCCGTCCAAGAATCTGAGAGAGAAAGAGATAAAGAG 1649
Query 915 ACAGACTTTGCTTGAGCTTGTTGATTATATTGCAACGGTTTCTACAAAGTTGAGTGATGC 974
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 ACAGACTTTGCTGGAGCTTGTTGATTATATTGCAACGGTTTCTACAAAGTTGAGTGATGC 1709
Query 975 TGCAATGCAAGAGATTGCGAAAGTGGCTGTTGTTAATCTTTTCAGGACGTTTCCTTCTGC 1034
||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1710 TGCGATGCAAGAGATTGCGAAAGTGGCTGTGGTTAATCTTTTCAGGACGTTTCCTACTGC 1769
Query 1035 GAATCACGAGAGTAAGATTCTCGAAACGCTTGATGTGGATGATGAGGAACCTGCTTTAGA 1094
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GAATCACGAGAGTAAAATTCTTGAAACGCTTGATGTGGATGATGAGGAACCTGCTTTAGA 1829
Query 1095 GCCGGCTTGGCCTCATCTTCAAGTTGTCTATGAGCTTCTTCTTAGATTTGTGGCCTCGCC 1154
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1830 GCCGGCTTGGCCTCATCTTCAAGTTGTTTATGAGCTTCTTCTCAGATTTGTGGCCTCGCC 1889
Query 1155 TATGACTGATGCAAAGCTTGCAAAGAGATATATTGACCATTCATTT-GTCTTGAAGCTCT 1213
|||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 1890 TATGACTGATGCGAAGCTTGCAAAGAGATATATCGACCATTC-TTTCGTCTTGAAGCTCT 1948
Query 1214 TGGATTTGTTTGACTCTGAAGACCAGAGAGAGAGGGAATATCTAAAGACCATTCTTCATC 1273
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1949 TGGATTTGTTTGACTCTGAAGACCAAAGAGAGAGGGAATATCTAAAGACCATTCTGCATC 2008
Query 1274 GGATATACGGGAAATTCATGGTGCACCGACCCTTTATCAGAAAGGCGATCAACAATATCT 1333
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2009 GGATATACGGGAAATTCATGGTGCACCGACCCTTTATCAGAAAGGCCATCAACAATATCT 2068
Query 1334 TCTACAGATTCATTTTTGAAACCGAAAAGCATAACGGTATTGCAGAGTTGCTTGAGATAC 1393
|||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |
Sbjct 2069 TCTACAGATTCATTTTCGAAACTGAAAAGCATAATGGCATTGCAGAGTTGCTTGAGATTC 2128
Query 1394 TAGGAAGTATAATCAACGGTTTCGCTTTACCGTTAAAAGAAGAGCATAAGCTCTTCCTAA 1453
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2129 TAGGAAGTATAATCAACGGTTTCGCTTTGCCGTTAAAAGAGGAGCATAAGCTCTTCCTAA 2188
Query 1454 TCCGGGCATTGATTCCACTCCACAGACCTAAATGTGCATCTGCTTATCATCAACAGCTTT 1513
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2189 TCCGGGCCTTGATTCCACTCCACAGACCTAAATGTGCATCTGCCTATCATCAACAGCTAT 2248
Query 1514 CTTATTGCATTGTTCAGTTTGTAGAGAAAGACTTCAAGCTTGCTGATACGGTCATTAGAG 1573
|||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 2249 CTTATTGCATTGTTCAATTTGTAGAGAAAGACTTTAAGCTTGCCGATACCGTCATTAGAG 2308
Query 1574 GACTTCTAAAGTATTGGCCTGTGACTAATAGTTCAAAGGAAGTTATGTTTCTTGGAGAGT 1633
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2309 GCCTTCTAAAGTATTGGCCTGTGACTAACAGTTCAAAGGAAGTTATGTTTCTTGGGGAGT 2368
Query 1634 TGGAAGAAGTTTTGGAAGCAACTCAAGCAGCTGAGTTTCAGCGATGTATGGTTCCTTTAT 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGGAAGAAGTTTTGGAAGCAACTCAAGCAGCTGAGTTTCAGCGATGTATGGTTCCTTTAT 2428
Query 1694 TTCGTCAAATCGCTAGATGCCTCAACAGTTCACATTTTCAGGTGGCTGAAAGGGCTCTAT 1753
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2429 TCCGTCAAATCGCCCGATGCCTCAACAGTTCACATTTTCAGGTGGCTGAAAGGGCTCTGT 2488
Query 1754 TTCTATGGAACAACGATCACATAAGAAACCTGATTACTCAAAACCATAAAGTGATAATGC 1813
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 TTCTGTGGAACAACGATCACATAAGAAACCTGATTACTCAAAACCATAAAGTGATAATGC 2548
Query 1814 CCATTGTGTTCCCGGCTATGGAGAGAAACACACGGGGGCATTGGAACCAAGCAGTTCAGA 1873
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2549 CAATCGTGTTCCCGGCTATGGAGAGAAACACACGGGGCCATTGGAACCAAGCAGTTCAGA 2608
Query 1874 GTCTGACTTTGAATGTGAGAAAGGTAATGGCAGAGACAGACCAAATTCTGTTTGATGAAT 1933
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2609 GTCTGACTTTGAATGTGAGAAAGGTATTGGCAGAGACAGACCAAATTCTGTTTGATGAAT 2668
Query 1934 GCTTAGCCAAGTTCCAAGAAGATGAAGCGAATGAAACCGAGGTTGTAGCCAAACGAGAAG 1993
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2669 GCTTAGCCAAGTTCCAAGAAGATGAAGCAAATGAAAACGAGGTTGTAGCCAAACGAGAAG 2728
Query 1994 CAACATGGAAGCTTTTGGAAGAGTTAGCAGCTTCGAAATCCGTAAGCAACGAGGCAGTGC 2053
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 2729 CAACATGGAAGCTTTTGGAAGACTTGGCAGCTTCCAAATCCGTAAGCAACGAGGCAGTGC 2788
Query 2054 TCGTCCCCCGATTTTCATCTTCAGTTACTCTTGCAACCGGTAAAACTTCGGGTAGTTGA 2112
|||||||| |||| ||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct 2789 TCGTCCCCAGATTCTCATCATCGGTTACTCTTACAACCGGTAAAACTTCGGGTAGTTGA 2847
> Ahg930127 jgi|Araly1|930127|scaffold_302584.1
Length=1671
Score = 1219 bits (660), Expect = 0.0
Identities = 1121/1341 (84%), Gaps = 41/1341 (3%)
Strand=Plus/Plus
Query 771 TGGAGTTTATGAAGCATTGCCAAGCTTTAGAGATGTTCCTACCTCGGAGAAACCTAATCT 830
||| |||||||| || ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct 307 TGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATCTCGGAGAAACCGAATCT 366
Query 831 GTTTATCAAGAAGTTGAGTATGTGTTGCGTTGTGTTCGACTTCAATGATCCGTCGAAGAA 890
|||||| ||||||||||||||| || ||||| || ||||| | |||||| ||||||||
Sbjct 367 CTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTCTTTGACTTTAGTGATCCATCGAAGAA 426
Query 891 TCTGAGAGAGAAAGAGATAAAGAGACAGACTTTGCTTGAGCTTGTTGATTATATTGCAAC 950
|| | |||||||||||| ||| | ||||| ||||||||||| ||||||||| ||||| |
Sbjct 427 CCTAAAAGAGAAAGAGATTAAGCGGCAGACATTGCTTGAGCTCGTTGATTATGTTGCATC 486
Query 951 GGTTTCTACAAAGTTGAGTGATGCTGCAATGCAAGAGATTGCGAAAG-TGGCT-GTTG-T 1007
||| | ||||| | ||||| ||| ||||||||| | | |||| ||| | | | |
Sbjct 487 AGTTGGTGTGAAGTTTAATGATGTTGCGATGCAAGAGCTCAC-AAAGATGG-TAG-CGAT 543
Query 1008 TAATCT-TTTCAGGACGTTTCCTTCTGCGAATCACGAGAGTAAGATTCTCGAAACGCTTG 1066
|||||| ||| || ||||||||||||||||||||||||||||| ||||| |||| || ||
Sbjct 544 TAATCTGTTT-AGAACGTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTGAAATGCATG 602
Query 1067 ATGTGGATGATGAGGAACCTGCTTTAGAGCCGGCTTGGCCTCATCTTCAAGTTGTCTATG 1126
|| ||||||||||||||||| | || ||||| |||||||||||| |||||||||| ||||
Sbjct 603 ATATGGATGATGAGGAACCTTCGTTGGAGCCAGCTTGGCCTCATATTCAAGTTGTGTATG 662
Query 1127 AGCTTCTT-CTTAGATTTGTGGCCTCGCCTATGACTGATGCAAAGCTTGCAAAGAGATAT 1185
|| || || || ||||| ||||| || || |||||||| |||||||||||||||||||||
Sbjct 663 AGATT-TTGCTCAGATTCGTGGCTTCTCCCATGACTGACGCAAAGCTTGCAAAGAGATAT 721
Query 1186 ATTGACCATTCATTTGTCTTGAAGCTCTTGGATTTGTTTGACTCTGAAGACCAGAGAGAG 1245
||||||||||| |||||||||||||| || || |||||||| |||||||| || ||||||
Sbjct 722 ATTGACCATTCCTTTGTCTTGAAGCTGTTAGACTTGTTTGATTCTGAAGATCAAAGAGAG 781
Query 1246 AGGGAATATCT-AAAGACCATTCTTCATCGGATATACGGGAAATTCATGGTGCACCGACC 1304
||||||||| | ||| || ||||| |||||| | |||||||| ||||||||||| |||||
Sbjct 782 AGGGAATATTTGAAA-ACTATTCTGCATCGGGTCTACGGGAAGTTCATGGTGCATCGACC 840
Query 1305 CTTTATCAGAAAGGCGATCAACAATATCTTCTACAGATTCATTTTTGAAACCGAAAAGCA 1364
|| ||||||||||||||| ||||||||||||||||||||||||| || || ||||||||
Sbjct 841 CTATATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATTTCCGAGACTGAAAAGCA 900
Query 1365 TAACGGTATTGCAGAGTTGCTTGAGATACTAGGAAGTATAATCAACGG-TTTCGCTTTAC 1423
||| || |||||||||||||| ||||| || ||||||||||| || || ||| ||||| |
Sbjct 901 TAATGGCATTGCAGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGGTTT-GCTTTGC 959
Query 1424 CGTTAAAAGAAGAGCATAAGCTCTTCCTAATCCGGGCATTGATTCCACTCCACA-GACCT 1482
| |||||||||||||| ||||||||||| | || || |||||||| ||||||| | |||
Sbjct 960 CTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCACAAG-CCT 1018
Query 1483 AAATGTGCATCTG-CTTATCATC-AACAGCTTTCTTATTGCATTGTTCAGTTTGTAGAGA 1540
|||||| |||| | || || || |||||||||| |||||||| |||||||||||||| |
Sbjct 1019 AAATGTTCATCGGTCT-ATT-TCCAACAGCTTTCGTATTGCATAGTTCAGTTTGTAGA-A 1075
Query 1541 AAG-ACTTCAAGCTTGCTGATACGGTCATTAGAGGACTTCTAAAGTATTGGCCTGTGACT 1599
||| |||||||||| |||||||| || |||||||| ||| |||| |||||||||||||||
Sbjct 1076 AAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGCCTTTTAAAATATTGGCCTGTGACT 1135
Query 1600 AATAGTTCAAAGGAAGTTATGTTTCTTGGAGAGTTGGAAGAAGTTTTGGAAGCAACTCAA 1659
|| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 1136 AACAGCTCAAAGGAAGTAATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAGGCAACGCAA 1195
Query 1660 GCAGCTGAGTTTCAGCGATGTATGGTTCCTTTATTTCGTCAAATCGCTAGATGCCTCAAC 1719
|| |||||||||||||| |||||||| ||||||| || ||||| ||| |||||||||||
Sbjct 1196 GCCGCTGAGTTTCAGCGCTGTATGGTCCCTTTATCCCGACAAATTGCTCGATGCCTCAAC 1255
Query 1720 AGTTCACATTTTCAGGTGGCTGAAAGGGC-TCTATTTCTATGGAACAACGATCACATAAG 1778
|||| ||||||||||| |||||||| || | | |||||||||||||||||||| |||||
Sbjct 1256 AGTTTGCATTTTCAGGTTGCTGAAAGAGCAT-TGTTTCTATGGAACAACGATCATATAAG 1314
Query 1779 AAACCTGATTACTCAAAACCATAAAGTGATAATGCCCATTGTGTTCCCGGCTATGGAGAG 1838
||||||||| ||||| ||||||||||| |||||||| || || ||||| ||| | |||||
Sbjct 1315 AAACCTGATCACTCAGAACCATAAAGTAATAATGCCTATAGTCTTCCCAGCTCTCGAGAG 1374
Query 1839 AAACACACGGGGGCATTGGAACCAAGCAGTTCAGAGTCTGACTTTGAATGTGAG-AAAGG 1897
|||||| || || || ||||||||||||||||| ||||||||| | || ||||| ||||
Sbjct 1375 AAACACGCGAGGACACTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAAG- 1433
Query 1898 TAATGGCAGAGACA--GACCAAATTCTGTTT-GATGAATGCTTAGCCAAGTTCCAAGAAG 1954
|| | | | |||| |||||| |||| ||| || || || |||||||| ||||||| ||
Sbjct 1434 TATT--CTGCGACATTGACCAAGTTCT-TTTCGACGAGTGTTTAGCCAAATTCCAAGTAG 1490
Query 1955 ATGAAGCGAATGAAACCGAGGTTGTAGCCAAACGAGAA-GCAACATGGAAGCTTTTGGAA 2013
| |||| |||| |||| |||||| ||| ||||| ||| | ||||||| ||| || |||
Sbjct 1491 AAGAAGAGAATAAAACAGAGGTTAAAGCGAAACGGGAAAG-AACATGGCAGCGGTTAGAA 1549
Query 2014 GAGTTAGCAGCTTCGAA-ATCCGT---AAGCAACGAGGCAGTGCTCGTCCCCCGATTT-T 2068
|| |||||| |||| || | |||| || ||||||| || |||| || || ||||| |
Sbjct 1550 GATTTAGCAACTTCAAAGA-CCGTTGTAACCAACGAGACAATGCTGGTTCCAAGATTTGT 1608
Query 2069 CATCTTCAGTTACTCTTGCAA 2089
|| ||||| | ||||||||
Sbjct 1609 G-TCCTCAGTCAATCTTGCAA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92559295350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5