BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15417.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493348 jgi|Araly1|493348|fgenesh2_kg.7__2781__AT4G15417.1 815 0.0
> Ahg493348 jgi|Araly1|493348|fgenesh2_kg.7__2781__AT4G15417.1
Length=655
Score = 815 bits (441), Expect = 0.0
Identities = 513/548 (94%), Gaps = 3/548 (1%)
Strand=Plus/Plus
Query 33 TCTTGTCTCTATGGGATCGCAACTCTCAAACGCA---ATCGACGGTAAAGATAACACCAA 89
||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||
Sbjct 1 TCTTGTCTCTATGGGATCGCAACTCTCAAACACAGTCGTCGAAGGTGAAGATAACACCAA 60
Query 90 AACCATCGGATCAGCGGATCCGGACCAGCTTATGGAGATCGAATCCTTGGAGAAGATCTT 149
||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AACCATCGGATCAACCGCTCCGGACCAGCTTTTGGAGATCGAATCCTTGGAGAAGATCTT 120
Query 150 AAATTACAAGTTCAAAGACAAGAGTTTGTTGCTGAAAGCGTTCACAGACGCTAGTTACGT 209
|||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||
Sbjct 121 AAATTACAAGTTCAAAGACAAGAGATTGTTGGTGCAAGCGTTTACAGACGCTAGTTACGT 180
Query 210 TGATGACAAGAGTGAATCGTACGAACTCCTAGAACTTTTAGGAGATTCGATCCTAAATAT 269
|||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TGATGATAAGTGTGATTCGTACGAAATCCTAGAACTTTTAGGAGATTCGATCCTAAATAT 240
Query 270 GGGTATAATCTATGATTTTATTAAGCTCTACCCTAAAGAAGCACCTGGTCCGTTGACCAA 329
| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 241 GAGTATAATCTATGAGTTTATTAAGCTTTACCCTAAAGAATCACCTGGTCCGTTGACCAA 300
Query 330 GCTCCGAGCCGTCAACGTAGATACCGAGAAATTGGCACGGGTCGCTGTAAATCACCAACT 389
|||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 301 GCTCCGAGCCGTTAACGTAGACACCGAGAAATTGGCCCGGGTCGCTGTAAAACACCAACT 360
Query 390 CTATAGCTATCTCCGTCATAAGAAACCCTTGCTTGAGGAGCAAATACTAGAATTTGTGGA 449
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CTATCGCTACCTCCGTCATAAGAAACCCTTGCTTGAGGAGCAAATACTGGAATTTGTGGA 420
Query 450 AGCCATGGAAAAATATCCATTACATTCAAATGGTCTTTTAAAAGTTCCTAAAGTTCTAGC 509
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AGCCATGGAAAAATATCCACTACATTCAAATGGTCTTTTGAAAGTTCCTAAAGTTCTAGC 480
Query 510 AGACATAGTAGAGTCTACCATTGGAGCTATCTTCATGGACTGCAACTCCACCGAGACCGT 569
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 481 AGACATAGTAGAGTCTACCATTGGAGCTCTCTTCATGGACTGCAACTCCACTGAGACCGT 540
Query 570 CTGGAAGG 577
|||| |||
Sbjct 541 CTGGGAGG 548
Score = 167 bits (90), Expect = 1e-40
Identities = 104/111 (94%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 727 GAGGATAAGTTTGTTGGATGTGGTCACCATCCTGTCAAGAAAGAAACTGCTCGTAATTTC 786
||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 545 GAGGATAAGTTCGTTGGATGTGGACAACATCCTGTGAAGAAAGAAACTGCTCGTAATTTC 604
Query 787 GCTGCAAAAAATGCTATTGACAATTTTGCTAAATTTTTCGGAGACCTTTAG 837
||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 605 GCTGCAAAAAATGCTATCGACAATTTTTCTAAATTCTTCGGAGACCTTTAG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5