BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15440.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355235 jgi|Araly1|355235|fgenesh1_pg.C_scaffold_7002408 2111 0.0
> Ahg355235 jgi|Araly1|355235|fgenesh1_pg.C_scaffold_7002408
Length=1464
Score = 2111 bits (1143), Expect = 0.0
Identities = 1362/1467 (93%), Gaps = 18/1467 (1%)
Strand=Plus/Plus
Query 76 ATGGCGGC-GACTTCCCCGCGGCCACCACCGTCAACATCCCTAACATCTCAGCAGCCACC 134
|||||||| | ||||||||||| |||||||||||||| ||||| |||| |||||||| ||
Sbjct 1 ATGGCGGCTG-CTTCCCCGCGGTCACCACCGTCAACACCCCTATCATCGCAGCAGCCTCC 59
Query 135 ATCACCCCCCTCACAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGCTGGCC-GTTGG 193
||| |||| || ||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 60 GTCATCCCCGTCGCAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGTTGGCCGGTT-G 118
Query 194 TTGGACCATTATCGGACCGTTTAG---A-------TTCCAAGGACCCGATAAGTTTTTCC 243
||||||| || ||||||||||||| | |||||||||||||||||||||||||
Sbjct 119 TTGGACCTTTGTCGGACCGTTTAGATTACTTCTGGTTCCAAGGACCCGATAAGTTTTTCC 178
Query 244 GGACAAGAGCTGAGAAGTATAAGAGCACTGTGTTCCGTACAAATATTCCTCCGACGTTTC 303
||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 GGACAAGGGCTGAAAAGTACAAGAGCACTGTGTTCCGTACAAACATTCCTCCGACGTTTC 238
Query 304 CTTTCTTCGGCAACGTTAACCCTAACATCGTCGCCGTTCTTGACGTCAAGTCTTTTAGCC 363
||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 239 CTTTCTTTGGCGACGTTAACCCTAACATTGTCGCCGTTCTCGACGTCAAGTCTTTTAGCC 298
Query 364 ATCTTTTTGACATGGATCTAGTTGATAAAAGAGATGTTCTCATCGGAGACTTCCGGCCTA 423
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 ATCTCTTTGACATGGATCTGGTTGATAAAAGAGATGTTCTCATTGGAGACTTCCGGCCTA 358
Query 424 GCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGC 483
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 359 GCCTTGAGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTTGACACTACCGAGCCAAAGC 418
Query 484 ACGCCAAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTAC 543
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 419 ACGCCAAGATAAAAAGTTTCACTATGGAAATACTAAAACGAAGCTCAAAAGTATGGCTAC 478
Query 544 AAGAGCTTCGTTCAAACCTAAACATTTTCTGGGGAACAATCGAATCCGAAATCT-CCAAA 602
|||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||
Sbjct 479 AAGAGCTTCGTTCAAACCTAAACACTTTCTGGGGAACAATCGAATCCGAAGT-TACCAAA 537
Query 603 AACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCC 662
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 AACGGCGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGTGCC 597
Query 663 TCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 722
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTCTCGCCGGCGTTGACGTTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 657
Query 723 ATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAGTTCCTCAG 782
|||||||||||||||| ||||||||||| ||||| ||||||| ||| | |||||||||
Sbjct 658 CTCAATACTTGGCTTGCATTGCAAGTTATCCCCACCACTAAACTCGGCATTGTTCCTCAG 717
Query 783 CCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAAT 842
|| |||||||||||||| || |||||||||||||| |||||||||||| |||||||||||
Sbjct 718 CCGCTTGAAGAGATTTTTCTCCATACTTGGCCTTACCCTTCTCTCTTAGTCGCCGGAAAT 777
Query 843 TACAAAAAGCTTTACAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 902
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TACAAAAAGCTTTGCAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 837
Query 903 GAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTT 962
||||||||||||||||||||||||||| | ||||| |||||| | || || || ||||||
Sbjct 838 GAAGAATTCGGGTTGACCCGAGATGAGACGATTCAGAATCTTTTATTCGTGTTGGGTTTT 897
Query 963 AATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGAC 1022
|| || |||||||||||||||||||| ||||||| ||||||||| | ||| ||||||||
Sbjct 898 AACGCTTACGGGGGCTTTTCCGTCTTTTTACCTTTTTTGATCGGAAAAATCACCGGCGAT 957
Query 1023 AATTCCGGTTTACAGGAGAGGATTAGAA-CCGAAGTCAGGAGAGTTTGCGGATCCGGGTC 1081
||||||||| | ||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 958 AATTCCGGTCTCCAGGAGAGGATTA-AATCCGAAGTCAGGAGAGTTTGCGGATCCGAGTC 1016
Query 1082 GGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAAC 1141
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 GGATCTTAATTTCAAGACGGTCAACGAAATGGAGCTGGTTAAATCGGTGGTTTACGAAAC 1076
Query 1142 GCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGAT 1201
||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1077 GCTGCGTTTTAATCCTCCGGTTCCTTTGCAATTCGCACGTGCGAGGGAAGATTTTCAGAT 1136
Query 1202 AAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCC 1261
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1137 AAGTTCACACGATGCTGTTTTTGAGGTTAAGAAAGGTGAGCTTCTTTGTGGTTACCAGCC 1196
Query 1262 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTA 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTT 1256
Query 1322 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1316
Query 1382 CGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGC 1441
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 AGGTACACCGAGCGCTTCGAACAAACAGTGTGCAGCTAAGGACATGGTCACTCTCACGGC 1376
Query 1442 TTCCTTGCTCGTTGCCGATTTATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTTC 1501
| |||| || |||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 1377 TAGCTTGGTCATTGCCGATTTATTTCTCCGGTATGATTCGGTTACTGGCGACTCCGGTTC 1436
Query 1502 AATTAAAGCTGTTGTTAAAGCTAAATA 1528
|||||||||||||||||||||||||||
Sbjct 1437 AATTAAAGCTGTTGTTAAAGCTAAATA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5