BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15450.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890749 jgi|Araly1|890749|Al_scaffold_0007_2735 1653 0.0
> Ahg890749 jgi|Araly1|890749|Al_scaffold_0007_2735
Length=1125
Score = 1653 bits (895), Expect = 0.0
Identities = 1067/1147 (93%), Gaps = 23/1147 (2%)
Strand=Plus/Plus
Query 24 ATGAGTTTTTTCAGATCAAAGACTTCAAAAACTGAAACACAACAACCATCATCGTATGGA 83
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 1 ATGAGTTTTTTCAGATCAAAGACTTCAAGAACCGAAACACAACAACCATCTTCGTACGGA 60
Query 84 CAACAACAAGACGCTATGTACTCATCTTACGGAACCGTGAGTGACGAAGTGTTATTACAG 143
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CAACAACAAGACGCCATGTACTCATCTTACCAAACCGTGAGTGACGAAGTGTTATTACAG 120
Query 144 ATTCATGGATGCAGAGCTCATCTCATCAACGGATCCGAAGCTGTGGAGCTAGCCGCCGGA 203
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATTCATGGATGCAGAGCTCATCTCATCAACGGATCCGAAGCTGTGGAGCTCGCCGCCGGA 180
Query 204 GACTTCGAGCTTGTACAAGTCTTAGACAGCAACGTAGCCTTAGCTATGGTCGTGAGGATC 263
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GACTTCGAGCTTGTACAAGTCTTAGACAACAACGTAGCCTTAGCTATGGTCGTGAGGATC 240
Query 264 GGAAATGACTTACAATGGCCGGTGATTAAAGACGAGCCAGTGGTGAAACTTGACTCTCGT 323
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGACGTGACTTACAATGGCCGGTGATTAAAGACGAGCCAGTGGTGAAACTTGACTCTCGT 300
Query 324 GACTACCTCTTCACGTTGCCGGTTAAAGATGGAGAGCCACTTAGTTACGGCATCACGTTT 383
||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct 301 GACTACCTCTTCACGTTGCCGGTGAAAGACGGAGAGCCACTTAGCTACGGTGTCACGTTT 360
Query 384 TTCCCTATTGATGAAAATGACATCGTTTTTGTGAATAGTATCGAGTTGCTAGAC-GATTT 442
||||| || |||||||| ||| ||||||||||||||||||| |||||| ||| | |||||
Sbjct 361 TTCCCCATCGATGAAAACGACGTCGTTTTTGTGAATAGTATTGAGTTGTTAG-CTGATTT 419
Query 443 CTTGAGAGAGAAttcttgtttctcttcgtctccgtcttcttcttcgtcttcttcttcgtc 502
|||||||||||| ||||| || | || ||||||||| ||||||||
Sbjct 420 CTTGAGAGAGAA---------CTCTT-GT-T---TC-TCTTCTTCG------TCTTCGTC 458
Query 503 ttcttcttcGAGTGTTAACAATGGAATTGATTGGAAAGAGTTTGCGCCTAAGATTGAAGA 562
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 459 TTCTTCTTTGAGTGTGAACAATGGAATTGATTGGAAAGAGTTTGCGCCTAGGATTGAAGA 518
Query 563 TTATAACAATGTTGTAGCTAAAGCTATTGCAGGAGGTACAGGGCATATCATTAGAGGGAT 622
||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 519 TTATAACAATGTTGTGGCTAAAGCTATTGCGGGAGGTACCGGGCATATTATTAGAGGGAT 578
Query 623 GTTTAAATGCAGTAATGCTTACACTAATCAGGTTCATAAAGGAGGTGAAATTATGATTAC 682
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 579 GTTTAAATGCAGTAATGCTTATACTAATCAGGTTCACAAAGGAGGTGAGATTATGATTAC 638
Query 683 GAAGGCTGAGAAAAAGAATGGTGCCTCGTCAAAAAGAAATGCAACCACAAACAAGAATCA 742
||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 639 AAAGGCTGAGAAGAAGAGTGGTGCCTCGTCAAAAAGAAGTGCAAGCACAAACAAGAATCA 698
Query 743 AATCAACAAGAACCTTCAACGAGTAAGGAAATTGTCTAGGGCGACGGAGAAATTGAGCAA 802
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 699 AATCAATAAGAACCTTCAACGAGTAAGGAAATTGTCGAGAGCGACCGAGAAATTGAGCAA 758
Query 803 GACAATGTTGAATGGTGTGGGAGTGGTGAGTGGCTCGGTGATGGGTCCAGTTGTAAAGTC 862
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 759 GACAATGCTGAATGGTGTGGGAGTTGTGAGTGGCTCGGTGATGGGTCCAGTTGTAAAGTC 818
Query 863 GAAGCCAGGGAAAGCTTTTTTCTCAATGGTTCCAGGGGAGGTTCTATTGGCTTCACTTGA 922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CAAGCCAGGGAAAGCTTTTTTCTCAATGGTTCCAGGGGAGGTTCTATTGGCTTCACTTGA 878
Query 923 TGCTCTTAATAAATTACTAGACGCTGCTGAAGCCGCAGAGAGACAAACTCTTTCTGCTAC 982
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 879 TGCACTTAATAAATTACTAGACGCTGCTGAAGCTGCAGAAAGACAAACTCTTTCTGCTAC 938
Query 983 GTCCAAAGCTACTACAAGAATGGTTAGTGAGAGGTTAGGTGAGAGCGCGGGAGAAGCTAC 1042
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 939 GTCCAAAGCTACTACCAGAATGGTTAGTGAGAGGTTGGGTGAGAGCGCGGGGGAAGCTAC 998
Query 1043 GAAAGATGTACTAGGCACGGTTGGGCACGCAGCCGGCACTGCGTGGAACGTCTTCAATAT 1102
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 999 GAAAGATGTGCTAGGCACGGTTGGCCACGCAGCCGGCACTGCGTGGAATGTCTTCAATAT 1058
Query 1103 CCGCAAAGCTTTCTCTCCTTCCTCTTCAGTCACATCGGGGATCCTCAAAAACGCTTCACG 1162
|||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 1059 CCGCAAGGCTTTCTCTCCTTCCTCTTCACTCACATCAGGGATACTCAAAAACGCTTCACG 1118
Query 1163 AAAGTGA 1169
|||||||
Sbjct 1119 AAAGTGA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5