BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15460.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946772 jgi|Araly1|946772|scaffold_703001.1                        237    5e-62


> Ahg946772 jgi|Araly1|946772|scaffold_703001.1
Length=436

 Score =  237 bits (128),  Expect = 5e-62
 Identities = 228/272 (84%), Gaps = 23/272 (8%)
 Strand=Plus/Plus

Query  197  GTGGAGGAGGTGGTCATGCTAGTGTAGGAGGAGGCCATGCTAGTGGAGGAGGTGGTCATG  256
            |||||||||| |||||||||||||||||||| || |||||||||| |||||||| |||||
Sbjct  145  GTGGAGGAGGAGGTCATGCTAGTGTAGGAGGTGGTCATGCTAGTGCAGGAGGTGCTCATG  204

Query  257  CTGTTGAAGGAGGAGGCCATGCTGGTG--G-AGGCGG---TG--GC-GGA--CA-TGG--  302
            |||||||||||||||||||||||| ||  | ||| ||   ||  || |||  |  |||  
Sbjct  205  CTGTTGAAGGAGGAGGCCATGCTGTTGCAGGAGGAGGCCATGCTGCTGGAAGCGCTGGTG  264

Query  303  -------AGAAGAAGAAGGTGGGCATGGGATCGGAAGAGGTGGTGGTATGGTTCATCGAC  355
                   |||||||||||||||||||  |||||||||||| || ||||||||||||||||
Sbjct  265  GCCGTGGAGAAGAAGAAGGTGGGCATATGATCGGAAGAGGCGGCGGTATGGTTCATCGAC  324

Query  356  CAGCGACGAGGAACGGAG-GCTCTACACTAACTATTCCCTTTGTCGATGGATCTACAACT  414
            |||| ||||||||||||| | |||||||||| || ||| |||| |||||||||| ||| |
Sbjct  325  CAGCAACGAGGAACGGAGAG-TCTACACTAATTACTCCTTTTGCCGATGGATCTGCAATT  383

Query  415  GTTTTCATGATCATAttttttttATTTAACTA  446
            |||||||||||||| |||||| ||||||||||
Sbjct  384  GTTTTCATGATCATCTTTTTTCTATTTAACTA  415


 Score =  213 bits (115),  Expect = 9e-55
 Identities = 202/241 (84%), Gaps = 17/241 (7%)
 Strand=Plus/Plus

Query  1    ATGAAAATCACGAAGACTCGAGCACACTTTGTTACCAATTATGCAGCGAAACTCGCCGTC  60
            |||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct  21   ATGAGAATCACCAAGACTCGAGCACACTTTGTTACCAATTATGCCGTGAAACTCGCCGTC  80

Query  61   CTTCTAATTATCACTTTACTTTTAGTCAATTGTACCACCGTGGTTGCCAAAGGCGGTGGT  120
            || ||||| |||||||||||| |  |||| ||||||||||| ||||||   ||   || |
Sbjct  81   CTGCTAATCATCACTTTACTTCTCTTCAAGTGTACCACCGTTGTTGCC---GG---TGCT  134

Query  121  GGAGGCGCTCACGGTGGAGGTGGAG-TCCATGTTAGTGTCGGAGGTGCTCATGCTAGTGT  179
            |||| |  |||||||||||| |||| || ||| |||||| ||||||| ||||||||||| 
Sbjct  135  GGAG-C--TCACGGTGGAGGAGGAGGTC-ATGCTAGTGTAGGAGGTGGTCATGCTAGTGC  190

Query  180  AGGAGGAGGC-CATGCTAGTGGA-GGAGGTGGTCATGCTAGT-GTAGGAGGAGGCCATGC  236
            |||||| | | |||||| || || ||||| || |||||| || | |||||||||||||||
Sbjct  191  AGGAGGTG-CTCATGCT-GTTGAAGGAGGAGGCCATGCT-GTTGCAGGAGGAGGCCATGC  247

Query  237  T  237
            |
Sbjct  248  T  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5