BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15475.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493343 jgi|Araly1|493343|fgenesh2_kg.7__2776__AT4G15475.1 2918 0.0
> Ahg493343 jgi|Araly1|493343|fgenesh2_kg.7__2776__AT4G15475.1
Length=1910
Score = 2918 bits (1580), Expect = 0.0
Identities = 1804/1914 (94%), Gaps = 8/1914 (0%)
Strand=Plus/Plus
Query 29 TCAACTGCAATCTCTCTCTGAACCATGAGAGGTCACGATCGGATTAACAATTGTTTGCCG 88
||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCAACAGCAATCTCTCTCTGAATCATGAGAGGTCACGATCGGATTAACAATTGCTTGCCG 60
Query 89 GAGGAACTTATCCTCGAGATATTCCGGCGACTTGAATCGAAACCGAATCGCGACGCATGC 148
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 61 GAGGAACTAATCCTCGAGATATTCCGGCGACTTGAATCGAAACCCAACCGCGACGCTTGC 120
Query 149 TCCCTCGTCTGCAAGCGATGGTTATCTCTCGAGCGATTTAGCCGCACCACGCTTCGTATC 208
|| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 121 TCTCTCGTCTGCAAACGATGGCTATCTCTCGAGCGATATAGCCGAACCACGCTTCGTATC 180
Query 209 GGCGCTTCGTTTTCTCCCGACGACTTCATCTCCCTCCTATCTCGTCGCTTTCTCTATATT 268
|||||||| |||||| |||| |||||||||||||| || ||||| ||||| ||| |||||
Sbjct 181 GGCGCTTCATTTTCTTCCGAAGACTTCATCTCCCTTCTCTCTCGCCGCTTCCTCCATATT 240
Query 269 ACCTCTATCCATGTCGACGAACGTATCTCCGTCTCCCTTCCTTCCCTCTCTCCTTCCCCA 328
|| || || ||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 241 ACATCCATTCATGTCGACGAGCGTCTCTCCGTCTCCCTTCCTTCTCTCTCTCCTTCCCCC 300
Query 329 AAAAGAAAACGTGGGAGGGACAGTTCGTCGCCATCGTCGAGTAAGCGGAAGAAATTGACT 388
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 301 AAAAGAAAACGTGGGAGGGACAGTTTGTCGCCATCGTCGAGTAAGCGGAAGAAATTGATT 360
Query 389 GATAAGACACATTCTGGAGCTGAGAACGTCGAGTCTTCCAGCTTGACTGATACGGGCTTG 448
| ||| | |||||||||||||||||| || ||||||| |||||||||||| |||| |||
Sbjct 361 GGTAATAAACATTCTGGAGCTGAGAATGTTGAGTCTTGTAGCTTGACTGATGCGGGTTTG 420
Query 449 ACTGCTCTAGC-GAATGGATTTCCAAGAA-TAGAAAACTTGAGCTTGATATGGTGCCCTA 506
|||||| | || | |||||||||||| || | ||||||||||||||||| ||||||||||
Sbjct 421 ACTGCTTTTGCTG-ATGGATTTCCAA-AAGTTGAAAACTTGAGCTTGATTTGGTGCCCTA 478
Query 507 ACGTTTCAAGTGTGGGTTTGTGTTCCCTTGCTCAGAAATGCACTTCACTTAAATCTCTT- 565
| |||||||||||||||||| |||| |||||| |||| |||| ||||||||||||| ||
Sbjct 479 ATGTTTCAAGTGTGGGTTTGCGTTCTCTTGCTGAGAAGTGCATTTCACTTAAATCT-TTG 537
Query 566 GATTTACAGGGTTGCTATGTTGGAGATCAAGGCTTAGCAGCTGTTGGAAAGTTTTGTAAG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATTTACAGGGTTGCTATGTTGGAGATCAAGGCTTAGCAGCTGTTGGAAAGTTTTGTAAG 597
Query 626 CAACTTGAAGAACTAAATTTGCGCTTTTGCGAAGGCTTAACTGATGTTGGAGTTATTGAT 685
||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 598 CAACTCGAAGAACTAAATCTGCGCTTTTGTGAAGGCTTAACCGATGTTGGAGTTATTGAC 657
Query 686 CTTGTTGTTGGTTGTTCCAAGTCTTTAAAGTCTATCGGTGTTGCTGCGTCAGCAAAAATA 745
||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||
Sbjct 658 CTTGTTGTTGGTTGTGCGAAGTCCCTAAAGTCTATTGGTGTTGCTGCGTCAGCAAAAATT 717
Query 746 ACAGATTTATCTCTGGAAGCAGTTGGTTCTCACTGTAAATTACTAGAAGTTTTGTATTTG 805
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 ACAGATTTATCTCTGGAAGCAGTTGGTTCTCACTGTAAATTACTAGAAGTTCTGTATTTG 777
Query 806 GATTCTGAATACATCCATGATAAAGGATTGATAGCGGTGGCTCAGGGATGCCACCGTTTG 865
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GATTCTGAATACATCCATGATAAAGGATTGATAGCGGTGGCTCAGGGATGCAACCGTTTG 837
Query 866 AAAAATCTGAAGCTTCAATGTGTTAGTGTGACGGATGTGGCTTTTGCTGCAGTGGGAGAG 925
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 838 AAAAATCTGAAGCTTCAATGTGTTGGTGTGACGGATAAGGCATTTGCTGCAGTGGGAGAC 897
Query 926 TTGTGTACTTCGTTGGAGCGATTGGCATTGTATAGCTTTCAGCATTTTACTGACAAGGGC 985
|||||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 898 TTGTGTACTTCGCTGGAACGATTGGCTTTGTATAGCTTTCAGAATTTTACTGACAAGGGC 957
Query 986 ATGCGAGCCATCGGTAAAGGGTCTAAGAAGTTGAAAGATCTTACTTTAAGTGATTGTTAC 1045
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 958 ATGCGGGCCATCGGTAAAGGGTCTAAGAAGTTGAAAGATCTCACTCTAAGTGATTGCTAC 1017
Query 1046 TTTGTGAGTTGCAAAGGTTTAGAAGCTATTGCTCATGGTTGTAAGGAACTTGAGCGTGTG 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTTGTGAGTTGCAAAGGTTTAGAAGCTATTGCTCATGGTTGTAAGGAACTTGAGCGTGTA 1077
Query 1106 GAAATTAACGGATGCCACAACATTGGTACACGTGGAATAGAGGCAATTGGAAAATCTTGC 1165
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1078 GAAATTAATGGATGCCATAACATTGGTACACGTGGAATAGAGGCAATTGGAAATTTTTGC 1137
Query 1166 CCGCGCCTCAAAGAGTTAGCTTTGTTGTATTGCCAAAGGATTGGTAATTCGGCTCTTCAA 1225
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1138 CCGCGCCTCAAAGAGTTAGCTTTATTGTATTGCCAAAGGATTGGTAATTCCGCTCTTCAA 1197
Query 1226 GAAATTGGAAAAGGCTGTAAATCCCTAGAAATACTTCACTTAGTAGACTGCTCTGGCATT 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 GAAATTGGAAAAGGCTGTAAATCCCTAGAAATACTTCACTTAGTAGACTGCTCAGGCATT 1257
Query 1286 GGAGACATCGCTATGTGCAGTATTGCTAAAGGCTGTCGCAACCTCAAGAAACTTCATATC 1345
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAGACAGCGCTATGTGCAGTATTGCTAAAGGCTGTCGCAACCTCAAGAAACTTCATATC 1317
Query 1346 CGCAGATGCTATGAGATAGGAAACAAAGGAATTATATCTATTGGAAAGCATTGCAAATCA 1405
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 CGCAGATGCTATGAGGTAGGAAACAAAGGAATTATAGCTATTGGAAAGCATTGCAAATCA 1377
Query 1406 CTAACCGAGCTTAGTCTCCGGTTTTGCGATAAAGTTGGAAATAAAGCATTAATCGCCATT 1465
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1378 CTAACCGAGCTTAGTCTCCGGTTTTGCGATAAAGTTGGAAATAAAGCGTTGATCGCCATT 1437
Query 1466 GGAAAAGGTTGCTCCTTACAACAACTAAACGTAAGTGGTTGTAATCAAATCAGCGATGCT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GGAAAAGGTTGCTCCTTACAACAACTAAACGTAAGTGGTTGTAATCAAATCAGCGATGCT 1497
Query 1526 GGAATAACAGCAATCGCCAGAGGCTGTCCTCAACTCACTCACCTCGACATTAGTGTTCTT 1585
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGAATATCAGCAATCGCCAGAGGCTGTCCTCAACTCACTCACCTCGACATTAGTGTTCTT 1557
Query 1586 CAGAACATTGGAGACATGCCGTTGGCTGAGCTTGGAGAAGGATGTCCAATGCTGAAAGAC 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CAGAACATTGGAGACATGCCGTTGGCTGAGCTTGGAGAAGGATGTCCAATGCTGAAAGAC 1617
Query 1646 TTGGTCTTGTCTCATTGCCACCATATAACAGACAATGGTCTGAACCATCTTGTACAGAAG 1705
||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 TTGGTTTTGTCCCATTGCCACCATATAACAGACACTGGTCTGAACCATCTTGTACAGAAA 1677
Query 1706 TGCAAACTTCTGGAGACTTGTCACATGGTTTACTGCCCAGGGATCACTTCCGCTGGAGTG 1765
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TGCAAACTTCTGGAGAGTTGTCACATGGTTTACTGCCCAGGGATCACTTCCGCTGGAGTG 1737
Query 1766 GCTACAGTCGTCTCGAGCTGTCCACACATCAA-AAAGGTGTTGATAGAGAAATGGAAAGT 1824
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1738 GCTACAGTCGTCTCGAGCTGTCCACACATCAAGAAAG-TGTTGATAGAGAAATGGAAAGT 1796
Query 1825 GACTGAGAGGACGACAAGGAGAGCTGGATCGGTTATCTCTTATCTATGCATGGATCTCTA 1884
||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1797 GACCGAGAGGACGACAAGGAGAGCTGGATCTGTTATCTCTTATTTATGCATGGATCTCTA 1856
Query 1885 GATCGTAATTTCAAGGTCAGTTTCTAAGATTTATGTTTATGTTTTCTTAATAAA 1938
||||||||||||||||| |||| ||||||| |||||||||||||| ||||||
Sbjct 1857 GATCGTAATTTCAAGGTTGGTTTAGAAGATTTGTGTTTATGTTTTCTGAATAAA 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5