BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15480.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493342 jgi|Araly1|493342|fgenesh2_kg.7__2775__AT4G15480.1 2191 0.0
Ahg946766 jgi|Araly1|946766|scaffold_702995.1 158 2e-37
> Ahg493342 jgi|Araly1|493342|fgenesh2_kg.7__2775__AT4G15480.1
Length=1487
Score = 2191 bits (1186), Expect = 0.0
Identities = 1389/1489 (93%), Gaps = 6/1489 (0%)
Strand=Plus/Plus
Query 40 aaaaaaTGGGATCCATATCAGAAATGGTGTTCGAAACTTGTCCATCTCCAAACCCAATTC 99
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2 AAAAAATGGGATCCATCTCAGAAATGGTGTTCGAAACTTGTCCATCTCCAAACCCAGTTC 61
Query 100 ATGTAATGCTCGTCTCGTTTCAAGGACAAGGCCACGTCAACCCTCTTCTTCGTCTCGGCA 159
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 62 ATGTAATGCTAGTGTCGTTTCAAGGACAAGGCCACGTGAACCCTCTTCTTCGTCTTGGCA 121
Query 160 AGTTAATTGCTTCAAAGGGTTTACTCGTTACCTTCGTTACAACGGAGCTTTGGGGCAAGA 219
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCTCATTGCTTCAAAGGGTTTACTCGTTACCTTCGTTACAACGGAGCTTTGGGGCAAGA 181
Query 220 AAATGAGACAAGCCAACAAAATCGTTGACGGTGAACTTAAACCGGTTGGTTCCGGTTCAA 279
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 182 AAATGAGACAAGCCAACAAGATCGTTGATGGTGAGCTTAAACCGGTTGGTTCCGGTTCAA 241
Query 280 TCCGGTTTGAGTTCTTTGATGAAGAATGGGCAGAGGATGATGACCGGAGAGCTGATTTCT 339
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 242 TCCGGTTTGAGTTCTTTGATGAAGAATGGGCAGATGACGATGACCGGAGAGCTGATTTCT 301
Query 340 CTTTGTACATTGCTCACCTAGAGAGCGTTGGGATACGAGAAGTGTCTAAGCTTGTGAGAA 399
||||||||||| | |||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 302 CTTTGTACATTTCACACCTAGAGAGCATTGGGATACGAGAAGTGTCGAAACTTGTGAGAA 361
Query 400 GATACGAGGAAGCGAACGAGCCTGTCTCGTGTCTTATCAATAACCCGTTTATCCCATGGG 459
||||||||||||| |||||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 362 GATACGAGGAAGCTAACGAGCCTGTCTCGTGTCTGATTAATAATCCGTTTATTCCATGGG 421
Query 460 TCTGCCACGTGGCGGAAGAGTTCAACATTCCTTGTGCGGTTCTCTGGGTTCAGTCTTGTG 519
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 TCTGCCACGTGGCGGAAGAGTTCAACATTCCTTGTGCGGTTCTTTGGGTTCAGTCTTGTG 481
Query 520 CTTGTTTCTCTGCTTATTACCATTACCAAGATGGCTCTGTTTCATTCCCTACGGAAACAG 579
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 482 CTTGTTTCTCTGCTTATTACCATTACCAAGATGGCTCTGTTTCTTTCCCGACGGAAACAG 541
Query 580 AGCCTGAGCTCGATGTGAAGCTTCCTTGTGTTCCTGTCTTGAAGAACGACGAGATTCCTA 639
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 542 AGCCTGACCTCGATGTTAAGCTTCCTTGTGTTCCTGTCTTGAAGCACGACGAGATTCCTA 601
Query 640 GCTTTCTCCATCCTTCTTCTAGGTTCACGGGTTTTCGACAAGCGATTCTTGGGCAATTCA 699
||||||||||||||||| || |||| | ||||| ||| |||| |||||||| |||||||
Sbjct 602 GCTTTCTCCATCCTTCTACTCCGTTCGCCGGTTTACGAGAAGCCATTCTTGGACAATTCA 661
Query 700 AGAATCTGAGCAAGTCCTTCTGTGTTCTAATCGATTCTTTTGACTCATTGGAACAAGAAG 759
|||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| |||||||
Sbjct 662 AGAATCTGAGAAAGTCCTTCTGTGTTTTAATCGATTCTTTCGACGCATTGGAGCAAGAAG 721
Query 760 TTATCGATTACATGTCAAGTCTTTGTCCGGTTAAAACCGTTGGACCGCTTTTCAAAGTTG 819
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 722 TGATTGATTACATGTCAAGGCTTTGTCCGGTTAAAACCGTTGGACCGCTTTTCAAAGTGG 781
Query 820 CTAGGA-CAGTTACTTCTGACGTAAGCGGTGACATTTGCAAATCAACAGATAAATGCCTC 878
|| | | | |||||||| ||||||| ||||||||||||||| | || ||||||||||||
Sbjct 782 CT-GAAACCGTTACTTCCAACGTAAGTGGTGACATTTGCAAACCGACGGATAAATGCCTC 840
Query 879 GAGTGGTTAGACTCGAGGCCTAAATCGTCAGTTGTCTACATTTCGTTCGGGACAGTTGCA 938
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 GAGTGGTTAGACTCGAGGCCTAAATCGTCCGTTGTCTACATTTCGTTCGGGACAGTTGCG 900
Query 939 TATTTGAAGCAAGAACAGATCGAAGAGATCGC-TCACGGAGTTTTGAAGTCGGGTTTATC 997
||||||||||||||||||||||| |||||||| | | ||||||||||| |||||||||||
Sbjct 901 TATTTGAAGCAAGAACAGATCGATGAGATCGCAT-ATGGAGTTTTGAAATCGGGTTTATC 959
Query 998 GTTCTTGTGGGTGATTAGACCTCCACCACACGATCTGAAGGTCGAGACACATGTCTTGCC 1057
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 960 GTTCTTGTGGGTGATTAGACCTCCACCGCACGATCTAAAGGTCGAGACACATGTCTTGCC 1019
Query 1058 TCAAGAACTTAAAGAGAGTAGTGCTAAAGGTAAAGGGATGATTGTGGATTGGTGCCCACA 1117
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 1020 TCAAGAACTTAAAGAGAGTAGTGATAAAGGTAATGGGATGATTGTGGATTGGTGTCCACA 1079
Query 1118 AGAGCAAGTCTTGTCTCATCCTTCAGTGGCATGCTTCGTGACTCATTGTGGATGGAACTC 1177
|||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1080 AGAGAAAGTCTTGGGTCATCCTTCAGTGGCATGTTTCGTGACACATTGTGGATGGAACTC 1139
Query 1178 GACAATGGAATCTTTGTCTTCAGGTGTTCCGGTGGTTTGTTGTCCGCAATGGGGAGATCA 1237
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GACGATGGAGTCTTTGTCTTCGGGTGTTCCGGTGGTTTGTTGTCCGCAATGGGGAGATCA 1199
Query 1238 AGTGACTGATGCAGTGTATTTGATCGATGTTTTCAAGACCGGGGTTAGACTAGGCCGTGG 1297
||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1200 AGTGACTGACGCGGTGTATTTGATCGATGTTTTTAAGACCGGAGTTAGACTAGGCCGTGG 1259
Query 1298 AGCGACCGAGGAGAGGGTAGTGCCAAGGGAGGAAGTGGCGGAGAAGCTTTTGGAAGCGAC 1357
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGCGGCAGAGGAGAGGGTTGTGCCAAGGGAGGAAGTGGCGGAGAAGCTTTTGGAAGCGAC 1319
Query 1358 AGTTGGGGAGAAGGCAGAGGAGTTGAGAAAGAACGCTTTGAAATGGAAGGCGGAGGCGGA 1417
| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1320 AATTGGGGAGAAGGCAGAGGAGTTGAGGAAGAATGCTTTGAAATGGAAGGCGGAGGCGGA 1379
Query 1418 AGCAGCGGTGGCTCCAGGAGGTTCGTCGGATAAGAATTTTAGGGAGTTTGTGGAGAAGTT 1477
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGCAGCGGTGGCTCCCGGTGGTTCGTCGGATAAGAATTTTAGGGAGTTTGTGGAGAAGTT 1439
Query 1478 AGGTGC-GGGAGTAACGAAGACTAAAGATAATGGATACTAGGCAAAAGT 1525
||| | ||||||| ||||| ||| || || ||| ||||||| |||||
Sbjct 1440 AGG-GATGGGAGTATCGAAGGTTAAGGAGAACGGACACTAGGCTAAAGT 1487
> Ahg946766 jgi|Araly1|946766|scaffold_702995.1
Length=1177
Score = 158 bits (85), Expect = 2e-37
Identities = 166/204 (81%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 1101 GTGGATTGGTG-CCCACAAGAGCA-AGTCTTGTCTCATCCTTCAGTGGCATGCTTCGTGA 1158
||||| ||||| ||| |||||| | ||| ||| |||||||| || | || |||||| | |
Sbjct 978 GTGGAATGGTGTCCC-CAAGAG-AGAGTGTTGGCTCATCCTGCAATTGCTTGCTTCTTAA 1035
Query 1159 -CTCATTGTGGATGGAACTCGACAATGGAATCTTTGTCTTCAGGTGTTCCGGTGGTTTGT 1217
| || || |||||||||||||||||||| |||| |||| || || || || ||||||
Sbjct 1036 GC-CACTGCGGATGGAACTCGACAATGGAGGCTTTAACTTCCGGAGTCCCTGTTGTTTGT 1094
Query 1218 TGTCCGCAATGGGGAGATCAAGTGACTGATGCA-GTGTATTTGATCGATGTTTTCAAGAC 1276
| ||||||||||||||||||||||||||||| | ||||| ||| | |||||||||||| |
Sbjct 1095 TTTCCGCAATGGGGAGATCAAGTGACTGATG-ATGTGTACTTGGTTGATGTTTTCAAG-C 1152
Query 1277 CGGG-GTTAGACTAGGCCGTGGAG 1299
| | || ||||||||||| ||||
Sbjct 1153 CATGAGTGAGACTAGGCCGCGGAG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5