BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15490.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493341 jgi|Araly1|493341|fgenesh2_kg.7__2774__AT4G15490.1 2553 0.0
Ahg493340 jgi|Araly1|493340|fgenesh2_kg.7__2773__AT4G15500.1 1245 0.0
Ahg946766 jgi|Araly1|946766|scaffold_702995.1 1075 0.0
> Ahg493341 jgi|Araly1|493341|fgenesh2_kg.7__2774__AT4G15490.1
Length=1730
Score = 2553 bits (1382), Expect = 0.0
Identities = 1588/1689 (94%), Gaps = 8/1689 (0%)
Strand=Plus/Plus
Query 72 AGAGATCGTCCAAGATTCGACGAAGA-GTAAAAGACAAAGAAGAAGAGAAGTGTATGTTT 130
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct 45 AGAGATCGTCCAAGATTCGACGAAGAGGTAAGAGACAAAGAAGAAGAGAAGTGTATCATT 104
Query 131 TTGCCACTCGTTTTGTTACTTTCTTTTGATATTTTGTTTTAGGTGTTCACATAAATTTGA 190
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 105 TTGCCACTCGTTTTGCTACTTTCTTTTGTTATTTTCTTTTAGGTGTTCACATAAATTTGA 164
Query 191 TAGTGTAAAGAAAACAAAACCACTTTCTAG-TT-CTTAAAGAAACTAGAAATCCATGGAC 248
|||||||||||||| ||||||| ||||||| || ||||||||||||||||| |||||||
Sbjct 165 TAGTGTAAAGAAAATAAAACCAGTTTCTAGTTTACTTAAAGAAACTAGAAA-CCATGGAA 223
Query 249 CCGTCTCGTCATACTCATGTGATGCTCGTATCTTTCCCCGGCCAAGGTCACGTAAACCCT 308
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 224 CCGTCTCGTCATACTCATGTGATGCTCGTATCTTTCCCAGGCCAAGGTCACGTAAACCCT 283
Query 309 CTACTTCGTCTCGGAAAGCTCATAGCCTCTAAAGGCTTACTCGTCACCTTTGTCACCACA 368
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CTTCTTCGTCTCGGAAAGCTCATAGCCTCTAAAGGCTTACTCGTCACCTTTGTCACCACA 343
Query 369 GAGAAGCCATGGGGCAAGAAGATGCGTCAAGCCAACAAGATTCAAGACGGTGTGCTCAAA 428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GAGCAGCCATGGGGCAAGAAGATGCGTCAAGCCAACAAGATTCAAGACGGTGTGCTCAAA 403
Query 429 CCGGTCGGTCTAGGTTTCATCCGGTTTGAGTTCTTCTCTGACGGCTTCGCCGACGACGAT 488
|||||||||||||||||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct 404 CCGGTCGGTCTAGGTTTCCTCCGGTTCGAGTTCTTCTCTGACGGTTTAGCTGACGACGAC 463
Query 489 GAAAAAAGATTCGACTTCGATGCCTTCCGACCACACCTTGAAGCTGTCGGAAAACAAGAG 548
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 464 GAAAAAAGATTCGACTTCAATACCTTCCGACCACACCTTGAAGCTGTAGGAAAACAAGAG 523
Query 549 ATCAAGAATCTCGTTAAGAGATATAACAAGGAGCCGGTGACGTGTCTCATAAACAACGCT 608
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||
Sbjct 524 ATCAAGAATCTCGTTAAGCGATATAACAAGGAACCGGTGACGTGTCTTATAAACAATGCT 583
Query 609 TTTGTCCCATGGGTATGTGATGTCGCCGAGGAGCTTCACATCCCTTCGGCTGTTCTATGG 668
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 584 TTTGTCCCATGGGTATGTGATGTGGCCGAGGAGCTTCACATCCCTTCGGCTGTTCTATGG 643
Query 669 GTCCAGTCTTGTGCTTGTCTCACGGCTTATTACTATTACCACCACCGGTTAGTTAAGTTC 728
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GTCCAGTCTTGCGCTTGTCTCACGGCTTATTACTATTACCACCACCGGTTAGTTAAGTTT 703
Query 729 CCGACCAAAACCGAGCCGGACATCAGCGTTGAAATCCCTTGCTTGCCATTGTTAAAGCAT 788
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 704 CCGACCGAAACCGAGCCGGACATTAACGTTGAAATCCCTTGCTTGCCATTGTTAAAGCAT 763
Query 789 GACGAGATCCCAAGCTTTCTTCACCCTTCGTCTCCGTATACAGCTTTTGGAGATA-TCAT 847
||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||
Sbjct 764 GACGAGATCCCAAGCTTTCTTCACCCTTCGTCTCCCTTTACAGCTTTTGGAGA-AGTCAT 822
Query 848 TTTAGACCAGTTAAAGAGATTCGAAAACCACAAGTCTTTCTATCTTTTCATCGACACTTT 907
|||||||||||| ||| || |||||||| ||||| |||| ||| ||||||||||||||||
Sbjct 823 TTTAGACCAGTTCAAGCGAATCGAAAACGACAAGCCTTTTTATATTTTCATCGACACTTT 882
Query 908 TCGCGAACTAGAAAAAGACATCATGGACCACATGTCACAACTTTGTCCTCAAGCCATCAT 967
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 883 TCGCGAACTAGAAAAAGACATCATCGACCACATGTCACAGCTTTCTCCTCAAGCCATCAT 942
Query 968 CAGTCCTGTCGGTCCGCTCTTCAAGATGGCTCAAACCTTGAGTTCTGACGTTAAGGGAGA 1027
|||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||||
Sbjct 943 CAGTCCTGTCGGTCCGCTTTTCAAGATGGCTCAAACCATGAGCTCCGACGTTAAGGGAGA 1002
Query 1028 TATATCCGAGCCAGCGAGTGACTGCATGGAATGGCTTGACTCAAGAGAACCATCCTCAGT 1087
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1003 TATCTCTGAGCCAGCGAGTGACTGCATGGAGTGGCTTGACTCAAGAGAACCATCCTCAGT 1062
Query 1088 CGTTTACATCTCCTTTGGGACTATAGCCAACTTGAAGCAAGAGCAGATGGAGGAGATCGC 1147
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1063 CGTTTACATCTCCTTTGGGACTATAGCCAACGTGAAGCAAGAGCAGATGGAGGAGATCGC 1122
Query 1148 TCATGGCGTTTTGAGCTCTGGCTTGTCGGTCTTATGGGTGGTTCGGCCTCCCATGGAAGG 1207
|||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||| ||
Sbjct 1123 TCATGGCGTTTTGAGCTCTGGCTTGTCGTTCTTGTGGGTTGTTCGGCCACCCATGGAGGG 1182
Query 1208 GACATTTGTAGAACCACATGTTTTGCCTCGAGAGCTCGAAGAAAAGGGTAAAATCGTGGA 1267
| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1183 GTCACTTGTAGAACCACATGTTTTGCCTCGCGAGATCGAAGAAAAGGGTAAAATCGTGGA 1242
Query 1268 ATGGTGTCCCCAAGAGAGAGTCTTGGCTCATCCTGCGATTGCTTGTTTCTTAAGTCACTG 1327
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 1243 ATGGTGTCCACAAGAGAGAGTCTTGGTTCATCCTGCAATTGCTTGTTTTTTAAGTCACTG 1302
Query 1328 CGGATGGAACTCGACAATGGAGGCTTTAACTGCC-GGAGTCCCCGTTGTTTGTTTTCCGC 1386
|||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct 1303 CGGATGGAACTCGACAATGGAGGCTTTAAC-GTCTGGTGTCCCCGTTGTTTGTTTTCCGC 1361
Query 1387 AATGGGGAGATCAAGTGACTGATGCGGTGTACTTGGCTGATGTTTTCAAGACAGGAGTGA 1446
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 1362 AATGGGGAGATCAAGTGACGGATGCGGTTTACTTGGTTGATGTTTTCAAGACAGGAGTGA 1421
Query 1447 GACTAGGCCGCGGAGCCGCTGAGGAGATGATTGTTTCGAGGGAGGTTGTAGCAGAGAAGC 1506
||||||||||||||| ||||| ||| ||||||||||||||| || || | |||||||
Sbjct 1422 GACTAGGCCGCGGAGAAGCTGAAAAGAAGATTGTTTCGAGGGAAGTAGTGGTGGAGAAGC 1481
Query 1507 TGCTTGAGGCCACAGTTGGGGAAAAGGCGGTGGAGCTGAGAGAAAACGCTCGGAGGTGGA 1566
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1482 TGCTTGAGGCCACGGTTGGGGAAAAGGCGGTGGAGCTAAGAGAAAACGCTCGGAGGTGGA 1541
Query 1567 AGGCGGAGGCCGAGGCCGCCGTGGCGGACGGTGGATCATCTGATATGAACTTTAAAGAGT 1626
||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1542 AGGCGGAAGCGGAGGCCGCGGTGGCGGACGGTGGATCATCTGATAGGAACTTTAAAGAGT 1601
Query 1627 TTGTGGACAAGTTGGTTACGAAACATGTGACGAGAGAAGACAACGGAGAACACTAGTGAT 1686
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1602 TTGTGGACAAGTTGGTTACGAAACATGTGACGAGAGAAGACAACGGAGACCACTAGTGAT 1661
Query 1687 AATGATGTCTCGAAAATATCCGACTATTTGTTGTACCGCAAAAACCTTAACCACTACAAC 1746
|||||||||||| |||||||||| | |||||| |||| |||||||||||||||| |||||
Sbjct 1662 AATGATGTCTCGTAAATATCCGAATGTTTGTTTTACCTCAAAAACCTTAACCACCACAAC 1721
Query 1747 Cttttcttt 1755
||||||||
Sbjct 1722 TTTTTCTTT 1730
> Ahg493340 jgi|Araly1|493340|fgenesh2_kg.7__2773__AT4G15500.1
Length=1428
Score = 1245 bits (674), Expect = 0.0
Identities = 1171/1407 (83%), Gaps = 50/1407 (4%)
Strand=Plus/Plus
Query 254 TCGTCATACTCATGTGATGCTCGTATCTTTCCCCGGCCAAGGTCACGTAAACCCTCTACT 313
|||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 16 TCGTTA-ACTCATGTGATGCTCGTATCATTCCCAGGCCAAGGTCACGTAAACCCTCTTCT 74
Query 314 TCGTCTCGGAAAGCTCATAGCCTCTAAAGGCTTACTCGTCACCTTTGTCACCACAGAGAA 373
|||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 75 TCGTCTCGGAAAACTCATAGCCTCTAAAGGTTTAATCGTCACCTTTGTCACCACAGAGGA 134
Query 374 GCCATGGGGCAAGAAGATGCGTCAAGCCAACAAGATTCAAGACGGTGTGCTCAAACCGGT 433
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 135 GCCATTAGGCAAGAAGATGCGTCAAGCAAATAAGATTCAAGACGGTGTGCTCAAACCGGT 194
Query 434 CGGTCTAGGTTTCATCCGGTTTGAGTTCTTCTCTGACGGCTTCGCCGACGACGATGAAAA 493
||||||||||||| ||||||| || |||||| || || || | | || | | | |
Sbjct 195 CGGTCTAGGTTTCCTCCGGTTCGAATTCTTCGAAGATGGATTTGTCTAC-A--AAG-ACG 250
Query 494 AAGATTCGACTTCGATGCCTTCCGACCA-CACCTTGAAGCTGT-CGGAAAACAAGAGATC 551
| || || || || |||| | | || ||||||| | | |||||||| |||||||
Sbjct 251 CCG-TT-GA-TT---TG--TTCCTAAAATCA-CTTGAAG-TTTCCGGAAAACGAGAGATC 300
Query 552 AAGAATCTCGTTAAGAGATAT-AACAAGGAGCCGGTGACGTGTCTCATAAACAACGCTTT 610
|||||||| || |||| |||| | | || | || |||| |||||||||||||||||||||
Sbjct 301 AAGAATCTTGTCAAGAAATATGAGC-AGCAACCAGTGAAGTGTCTCATAAACAACGCTTT 359
Query 611 TGTCCCATGGGTATGTGATGTCGCCGAGGAGCTTCACATCCCTTCGGCTGTTCTATGGGT 670
|||||||||||| ||||| || |||||||||||||| ||||| || |||||||| |||||
Sbjct 360 TGTCCCATGGGTGTGTGACGTAGCCGAGGAGCTTCAAATCCCATCAGCTGTTCTTTGGGT 419
Query 671 CCAGTCTTGTGCTTGTCTCACGGCTTATTACTATTACCACCACCGGTTAGTTAAGTTCCC 730
||||||||||||||| ||| | |||||||||||||||||||||| |||||||||||| ||
Sbjct 420 CCAGTCTTGTGCTTGCCTCGCCGCTTATTACTATTACCACCACCAGTTAGTTAAGTTTCC 479
Query 731 GACCA-AAACCGAGCCGGACATCAGC-GTTGAAATCCCTTGCTTGCCATT-GT--TAAAG 785
|| || |||| |||||||| |||| | ||||| |||||| | |||||| || | |||
Sbjct 480 GA-CAGAAACTGAGCCGGAGATCA-CAGTTGACTTCCCTTTCAAGCCATTAGTGATGAAG 537
Query 786 CATGACGAGATCCCAAGCTTTCTTCACCCTTCGTCTCCGTATACAGCTTTTGGAGATATC 845
|||||||||||||| ||||||||||||||||| ||||||| | | || | |||| ||||
Sbjct 538 CATGACGAGATCCCTAGCTTTCTTCACCCTTCCTCTCCGTTTTCCTCTGTGGGAGGTATC 597
Query 846 ATTTTAGACCAGTTAAAGAGATTCGAAAACCACAAGTCTTTCTATCTTTTCATCGACACT 905
|||||||| ||| | | || || | |||||| |||||| | || |||||||||||
Sbjct 598 ATTTTAGAACAGAT-CA-AG---CG-ACTTCACAAGCCTTTCTTTGTTCTCATCGACACT 651
Query 906 TTTCGCGAACTAGAAAAAGACATCATGGACCACATGTCACAACTTTGTCCTCAAGCCATC 965
|||| || || |||||||| | ||| ||||| ||||| || || || ||||| | ||||
Sbjct 652 TTTCAAGAGCTGGAAAAAGATACCATTGACCATATGTCCCAGCTCTGCCCTCATGTCATC 711
Query 966 ATCAGTCCTGTCGGTCCGCTCTTCAAGATGGCTCAAACCTTGAGTTCTGACGTTAAGGGA 1025
| | ||| |||||||||| || | ||||||| ||||| | || ||||| ||||||||
Sbjct 712 CTTAACCCTATCGGTCCGCTTTTTACGATGGCTAAAACCATAAGCTCTGATATTAAGGGA 771
Query 1026 GATATATCCGAGCCAGCGAGTGACTGCATGGAATGGCTTGACTCAAGAGAACCATCCTCA 1085
||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 772 GATATCTCCGAGCCAGCGAGTGACTGCATAGAGTGGCTTGACTCGAGAGAACCATCCTCT 831
Query 1086 GTCGTTTACATCTCCTTTGGGACTATAGCCAACTTGAAGCAAGAGCAGATGGAGGAGATC 1145
|| |||||| |||| ||||||||||| | ||||||||||||||||||| || |||||
Sbjct 832 GTTGTTTACGTCTCTTTTGGGACTATGGTTTACTTGAAGCAAGAGCAGATCGATGAGATT 891
Query 1146 GCTCATGGCGTTTTGAGCTCTGGCTTGT-CGGTCTTATGGGTGGTTCGGCCTCCCATGGA 1204
||||||||| || | | ||| || |||| | | ||||||||| |||||||||||| | |
Sbjct 892 GCTCATGGCATTCTCAACTCCGGGTTGTCCTG-CTTATGGGTTGTTCGGCCTCCCTTACA 950
Query 1205 AGGGACATTTG---TAGAACCACATGTTTTGCCTCGAGAGCTCGAAGA-AAAGGGTAAA- 1259
|||| |||| ||||||||| || ||||||| |||||| ||||| ||| || |||
Sbjct 951 AGGG---TTTGACCAAGAACCACAAGTCTTGCCTCTAGAGCTTGAAGAGAAA-GG-AAAG 1005
Query 1260 ATCGTGGAATGGTGTCCCCAAGAGAGAGTCTTGGCTCATCCTGCGATTGCTTGTTTCTTA 1319
||||| ||||||||||| ||||||| ||| ||||| ||||||||| ||||||| ||||||
Sbjct 1006 ATCGTAGAATGGTGTCCACAAGAGAAAGTGTTGGCCCATCCTGCGGTTGCTTGCTTCTTA 1065
Query 1320 AGTCACTGCGGATGGAACTCGACAATGGAGGCTTTAACTGCCGGAGTCCCCGTTG-TTTG 1378
|||||||||||||||||||| || |||||||| |||||| | ||||| |||| || ||||
Sbjct 1066 AGTCACTGCGGATGGAACTCAACCATGGAGGCATTAACTTCAGGAGTTCCCG-TGATTTG 1124
Query 1379 TTTTCCGCAATGGGGAGATCAAGTGACTGATGCGGTGTACTTGGCTGATGTTTTCAAGAC 1438
||| ||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct 1125 TTTCCCGCAGTGGGGAGATCAGGTGACAAATGCGGTGTACATGATTGATGTTTTCAAGAC 1184
Query 1439 AGGAGTGAGAC-TAGGCCGCGGAGCCGCTGAGGAGATGATTGTTTCGAGGGAGGTTGTAG 1497
|||| |||||| || ||||||||| |||||| ||| ||||||| ||||||||| || |
Sbjct 1185 AGGAATGAGACTTA-GCCGCGGAGAGGCTGAGAAGAGGATTGTTCCGAGGGAGGAGGTTG 1243
Query 1498 CAGAGAAG-CTGCTTGAGGCCACAGTTGGGGAAAAGGCGGTGGAGCTGAGAGAAAACGCT 1556
| ||| | ||||||||| |||| ||||| || ||||||| |||||||||||||||||||
Sbjct 1244 CTGAG-CGACTGCTTGAGTCCACCGTTGGAGAGAAGGCGGCGGAGCTGAGAGAAAACGCT 1302
Query 1557 CGGAGGTGGAAGGCGGAGGCCGAGGCCGCCGTGGCGGACGGTGGATCATCTGATATGAAC 1616
||||||||||||| |||||| ||| | ||||| ||| |||||||||||||||| | ||||
Sbjct 1303 CGGAGGTGGAAGGAGGAGGCGGAGACTGCCGTAGCGTACGGTGGATCATCTGAGAGGAAC 1362
Query 1617 TTTAAAGAGTTTGTGGACAAGTTGGTT 1643
||| |||||||||| ||||||||||||
Sbjct 1363 TTTCAAGAGTTTGTTGACAAGTTGGTT 1389
> Ahg946766 jgi|Araly1|946766|scaffold_702995.1
Length=1177
Score = 1075 bits (582), Expect = 0.0
Identities = 749/831 (90%), Gaps = 6/831 (1%)
Strand=Plus/Plus
Query 223 CTTAAAGAAACTAGAAATCCATGGACCCGTCTCGTCATACTCATGTGATGCTCGTATCTT 282
|||| ||||| |||||||||||||| ||||||| | | ||||||| |||||||||||||
Sbjct 1 CTTATAGAAAATAGAAATCCATGGAACCGTCTCCACTTCCTCATGTAATGCTCGTATCTT 60
Query 283 TCCCCGGCCAAGGTCACGTAAACCCTCTACTTCGTCTCGGAAAGCTCATAGCCTCTAAAG 342
||| |||||||||||| ||| |||||| ||||||||||||| ||| |||||||||||||
Sbjct 61 ACCCAGGCCAAGGTCACATAAGCCCTCTTCTTCGTCTCGGAACGCTTATAGCCTCTAAAG 120
Query 343 GCTTACTCGTCACCTTTGTCACCACAGAGAAGCCATGGGGCAAGAAGATGCGTCAAGCCA 402
||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 121 GCTTAATCGTCACCTTTGTTACCACAGAGCAGCCATGGGGCAAAAAGATGCGTCAAGCCA 180
Query 403 ACAAGATTCAAGACGGTGTGCTCAAACCGGTCGGTCTAGGTTTCATCCGGTTTGAGTTCT 462
||||||||||||| || ||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 181 ACAAGATTCAAGAAGGCGTGCTCAAACCCGTCGGTCTAGGTTTCCTCCGGTTCGAGTTCT 240
Query 463 TCTCTGACGGCTTCGCCGACGACGATGAAAAAAGATTCGACTTCGATGCCTTCCGACCAC 522
||||||||||||| | || ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 241 TCTCTGACGGCTTAACTGATGACGACGAAAAAAGAACCGACTTCAATGCCTTCCGACCAA 300
Query 523 ACCTTGAAGCTGTCGGAAAACAAGAGATCAAGAATCTCGTTAAGAGATATAACAAGGAGC 582
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 ACATTGAAGCTGTCGGAAAACAAGAGATCAAAAATCTCGTTAAGAGATATAACAAGGAAT 360
Query 583 CGGTGACGTGTCTCATAAACAACGCTTTTGTCCCATGGGTATGTGATGTCGCCGAGGAGC 642
||||||| ||||| ||||||||||||| ||| || ||||||||||| || ||||||||||
Sbjct 361 CGGTGACATGTCTTATAAACAACGCTTATGTGCCGTGGGTATGTGACGTGGCCGAGGAGC 420
Query 643 TTCACATCCCTTCGGCTGTTCTATGGGTCCAGTCTTGTGCTTGTCTCACGGCTTATTACT 702
|||| || ||||| ||||||||||||||||||||||| ||||||||| | |||||||| |
Sbjct 421 TTCAAATTCCTTCTGCTGTTCTATGGGTCCAGTCTTGCGCTTGTCTCTCTGCTTATTATT 480
Query 703 ATTACCACCACCGGTTAGTTAAGTTCCCGACCAAAACCGAGCCGGACATC-AGCGTTGAA 761
||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 481 ATTACCACCACGGGTTAGTTAAGTTTCCGACCAAAACCGAGCCGGACATCGA-CGTTGAA 539
Query 762 ATCCCTTGCTTGCCATTGTTAAAGCATGACGAGATCCCAAGCTTTCTTCACCCTTCGTCT 821
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 540 ATCCCTTGCTTGCCATTATTAAAGCATGACGAGATCCCAAGTTTTCTTCACACTTCGTCT 599
Query 822 CCGTATACAGCTTTTGGAGATA-TCATTTTAGACCAGTTAAAGAGATTCGAAAACCACAA 880
|| |||||| ||| ||||| | ||||||||||||| || ||| || |||||||| ||||
Sbjct 600 CCTTATACACCTTACGGAGA-AGTCATTTTAGACCAATTCAAGCGACTCGAAAACGACAA 658
Query 881 GTCTTTCTATCTTTTCATCGACACTTTTCGCGAACTAGAAAAAGACATCATGGACCACAT 940
| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 659 GCCTTTCTATCTTTTCATCGACACTTTCCGCGAACTAGAAAAAGATATCATCGACCACAT 718
Query 941 GTCACAAC-TTTGTCCTCAAGCCATCATCAGTCCTGTCGGTCCGCTCTTCAAGATGGCTC 999
|||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 GTCA-AACCTTTGTCCTCAAGCCATCATCAGCCCTGTCGGTCCGCTCTTCAAGATGGCTG 777
Query 1000 AAACCTTGAGTTCTGACGTTAAGGGAGATATATCCGAGCCAGCGAGTGACT 1050
||||| | || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 778 AAACCATAAGCTCTGACGTTAAAGGAGATATCTCCGAGCCAGCGAGTGACT 828
Score = 549 bits (297), Expect = 3e-155
Identities = 331/348 (95%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 1114 CCAACTTGAAGCAAGAGCAGATGGAGGAGATCGCTCATGGCGTTTTGAGCTCTGGCTTGT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CCAACTTGAAGCAAGAGCAGATGGAGGAGATCGCTCATGGCGTTTTGAGCTCTGGCTTGT 888
Query 1174 CGGTCTTATGGGTGGTTCGGCCTCCCATGGAAGGGACATTTGTAGAACCACATGTTTTGC 1233
|| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 889 CGTTCTTATGGGTAGTTCGGCCTCCCATGGAAGGGTCACTTGTAGAACCACATGTTTTGC 948
Query 1234 CTCGAGAGCTCGAAGAAAAGGGTAAAATCGTGGAATGGTGTCCCCAAGAGAGAGTCTTGG 1293
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 949 CTCGAGAGCTCGAAGAGATGGGTAAAATCGTGGAATGGTGTCCCCAAGAGAGAGTGTTGG 1008
Query 1294 CTCATCCTGCGATTGCTTGTTTCTTAAGTCACTGCGGATGGAACTCGACAATGGAGGCTT 1353
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1009 CTCATCCTGCAATTGCTTGCTTCTTAAGCCACTGCGGATGGAACTCGACAATGGAGGCTT 1068
Query 1354 TAACTGCCGGAGTCCCCGTTGTTTGTTTTCCGCAATGGGGAGATCAAGTGACTGATGCGG 1413
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1069 TAACTTCCGGAGTCCCTGTTGTTTGTTTTCCGCAATGGGGAGATCAAGTGACTGATGATG 1128
Query 1414 TGTACTTGGCTGATGTTTTCAAGACAGGAGTGAGACTAGGCCGCGGAG 1461
||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 1129 TGTACTTGGTTGATGTTTTCAAGCCATGAGTGAGACTAGGCCGCGGAG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5