BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15510.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493338 jgi|Araly1|493338|fgenesh2_kg.7__2771__AT4G15510.1 1670 0.0
Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1 165 6e-40
> Ahg493338 jgi|Araly1|493338|fgenesh2_kg.7__2771__AT4G15510.1
Length=1071
Score = 1670 bits (904), Expect = 0.0
Identities = 1022/1078 (95%), Gaps = 11/1078 (1%)
Strand=Plus/Plus
Query 1 ACCCAACCAAAATTCTCAATTTTCCCAGTGGATTACTCTTACAGT-CCAAAGTTTCAATT 59
|||||||||||| |||||| |||| |||||||||||||||||| | ||||||||||||||
Sbjct 1 ACCCAACCAAAACTCTCAA-TTTCACAGTGGATTACTCTTACATTCCCAAAGTTTCAATT 59
Query 60 TTTCTGAGCTTCAAAAATCCACTCTAATGGCTTCATCTGCATTTGCGTTTCCTTCTTACA 119
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 60 TTTCTGAGCTTCAAAAATCCACTTTAATGGCTTCATCTGCATTTGCTTTTCCTTCTTACA 119
Query 120 TAATAACCAAAGGAGCCTCAACAGATTCTTTCAAATCAACTTCTCTGTCTTCTTCTCGAT 179
||||||||| |||||| ||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 120 TAATAACCATAGGAGCTTCAACAGATTCTTGCAAACCAACTTCTCTGGCTTCTTCTCGAT 179
Query 180 CTTTGGTTACAGATTTCCATCTTTTGTTCTCCAGACCCATCTCTTCCGGTCCTAAATACC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 CTTTGGTTACAGATTTCCATCTTTTGTTCTCCAGACCCATCTCTTCCGGTCCCAAGCACC 239
Query 240 AATCTGCCAAGTCCGCTAAACCGGAATCTCCAG-TCGCCATAAACTGC-TTAACCGATGC 297
||||| ||||||||||||||||||| ||||||| || ||| ||||| | |||||||||||
Sbjct 240 AATCTTCCAAGTCCGCTAAACCGGATTCTCCAGTTC-CCAGAAACT-CGTTAACCGATGC 297
Query 298 CAAACAGGTTTGTGCAGTTGGGAGGAGGAAGAGCATGATGATGGGCTTGCTCATGTCTGG 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CAAACAGGTTTGTGCAGTTGGGAGGAGGAGGAGCATGATGATGGGCTTGCTCATGTCTGG 357
Query 358 TTTAATAGTTTCACAAGCCAATCTTCCAACAGCATTTGCTTCAACTCCAGTGTTTAGAGA 417
|||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 358 TTTAATGGTTTCTGAAGCCAATCTTCCAACAGCATTTGCTTCGACTTCAGTGTTTAGAGA 417
Query 418 ATACATAGATACATTTGATGGATACTCCTTCAAGTACCCTCAAAATTGGATCCAAGTCCG 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 ATACATAGATACATTTGATGGATACTCTTTCAAGTACCCTCAAAATTGGATCCAAGTCCG 477
Query 478 AGGAGCTGGTGCTGATATATTCTTTAGAGACCCTGTTGTCCTCGACGAGAACCTTTCAGT 537
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 478 AGGAGCTGGCGCTGATATATTCTTTAGAGACCCTGTTGTCCTCGACGAGAATCTCTCAGT 537
Query 538 CGAGTTTTCTTCGCCTTCTTCCTCAAATTACACGTCACTTGAAGACTTGGGATCCCCTGA 597
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 538 CGAGTTTTCTTCGCCTTCTTCCTCAAAATACACGTCACTTGAAGACTTGGGTTCCCCTGA 597
Query 598 AGAAGTAGGAAAGAGAGTACTTAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGAAGTAGGAAAGAGAGTACTTAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGG 657
Query 658 GGTTAAGCGCCAGGCCAACATTCTAAGCACTTCCTCTAGAGTTGCAGATGATGGTAAACT 717
|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 658 GGTTAAGCGCGAGGCCAACATTCTAAGCACTTCCTCCAGAATTGCAGATGATGGTAAACT 717
Query 718 CTACTACCAAGTTGAGGTGAACATAAAGTCATACGCAAACAACAACGAGCTAGCTGTGAT 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTACTACCAAGTCGAGGTGAACATAAAGTCATACGCAAACAACAACGAGCTAGCTGTGAT 777
Query 778 GCCACAAGATCGAGTGGCTCGTTTGGAATGGAACCGGCGCTACCTTGCAGTTCTAGGAGT 837
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GCCGCAAGATAGAGTGGCTCGTTTGGAATGGAACCGGCGCTACCTTGCAGTCCTAGGAGT 837
Query 838 TGAGAACGATAGACTCTATTCAATTAGACTCCAAACACCCGAGAAAGTTTTCCTGGAAGA 897
||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TGAGAACAACAGACTCTATTCAATTAGACTCCAAACACCTGAGAAAGTTTTCCTGGAAGA 897
Query 898 AGAAAAAGATCTAAGAAGAGTCATGGATTCGTTTAGGGTCGAGAAGATTTAGAAGAGCTC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 AGAAAAAGATCTAAGAAGAGTCATGGATTCGTTTAGGGTCGAGAAGATTTAGAATAGCTC 957
Query 958 ACATTCTCAATGTGAATTTCTTCTTATTCCAAACCAAAAAATCTTGTTGCTTACTACTTT 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 958 ACATTCTCCATGTGAATTTCTTCTTATTCCAAACCAAAAAATCTTGTTGCTGACTACATT 1017
Query 1018 TGATTACCAAACTAATAAATGATTTTGATTCAAATT-TTGAGATGTCATTATGACATA 1074
||||||||||| || || |||||||||||| || |||||||||||||||||||||
Sbjct 1018 -GATTACCAAAC-AA-AAC-GATTTTGATTCAGTTTATTGAGATGTCATTATGACATA 1071
> Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1
Length=2542
Score = 165 bits (89), Expect = 6e-40
Identities = 154/182 (85%), Gaps = 17/182 (9%)
Strand=Plus/Plus
Query 32 ATTAC-T-CTTACAGT-CCAAAG-TTTCAA--TT-T-TTCTGAGCTTCAAAAATCCACTC 83
||||| | |||||| | |||||| |||||| || | ||||||| |||||||| |
Sbjct 27 ATTACTTACTTACATTCCCAAAGTTTTCAACTTTCTCTTCTGAGGTTCAAAAA---GTTG 83
Query 84 TAATGGCTTCATCTGCATTTGCGTTTCCTTCTTACATAATAACC-AA--AGGAGCCTCAA 140
||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||
Sbjct 84 AAATGGCTTCATCTGCATTTGCTTTTCCTTCTTACATAATAACCAAAGGAGGAGTTTCAA 143
Query 141 CAGATTCTT-TCAAATCAACTTCTCTGTCTTCTTCTCGATCTTTGGTTACAGAT-TTCCA 198
||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 144 CAGATTCTTGT-AAATCAACTTCTTTGTCTTCTTCTCGATCTTTGGTTACAGATCTTTCA 202
Query 199 TC 200
||
Sbjct 203 TC 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5