BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15520.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493336 jgi|Araly1|493336|fgenesh2_kg.7__2769__AT4G15520.1 1354 0.0
> Ahg493336 jgi|Araly1|493336|fgenesh2_kg.7__2769__AT4G15520.1
Length=951
Score = 1354 bits (733), Expect = 0.0
Identities = 884/954 (93%), Gaps = 22/954 (2%)
Strand=Plus/Plus
Query 1 AGAAGACGACGACGATGGCGGGATTTGAGAGCTATGTGGTTGTTCACAACATAGCAAAGC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGACGACGACGATGGTGGGATTTGAGAGCTATGTGGTTGTTCACAACATAGCAAAGC 60
Query 61 GTCACAACGTCGGAACTTTAGCTCGTAGCGCCACTGCCTTTGGTGTGACGGAGCTAATCC 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 61 GTCACAACGTCGGAACTTTAGCTCGTAGCGCTACTGCTTTTGGTGTGACGGAGTTAATCC 120
Query 121 TCGTCGGTCGCCGTGATTTCAACGCCTTCGGTAGTCATGGTTCAGCTTCTCACATCCGTT 180
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTGGGTCGCCGTGACTTCAACGCCTTCGGTAGTCATGGTTCAGCTTCTCACATCCGTT 180
Query 181 TCCGCCATTTTCACTCTCTCATCGAAGCTCGCAACTATCTCAAGGAGGAGAAAGATTGCG 240
|||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCCGCCATTTTCACTCACTTATCGAAGCTCGCACCTATCTCAAGGAGGAGAAAGATTGCG 240
Query 241 ATATATGCGGCGTTGAGATTGCAGATGGAGCTTCTGCGGTTAATGAACATCCTTTCAAAA 300
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 241 ATATTTGCGGCGTTGAGATTGCAGATGGAGCTTCTGCTGTTAACGAACATCCTTTCAAAA 300
Query 301 GAAACACTGCGTTTCTTCTCGGTAATGAGGGATCAGGATTATCTGCGAAGGAATACGAAA 360
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 GAAACACTGCGTTTCTTCTTGGTAATGAGGGATCAGGATTATCTGCCAAGGAATATGAAA 360
Query 361 TATGCGACTTCTTTGTATATATTCCTCAGTATGGCTGTGGCACTGCCTCTTTGAATGTTA 420
| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 361 TTTGCGACTTCTTTGTATATATTCCTCAATATGGCTGTGGCACTGCCTCCTTAAATGTTA 420
Query 421 CTGTTGCAGCTTCTATTGTTTTGCATCACTTTGGAGTTTGGGCTGGATTTTCTGAACGTG 480
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 421 CTGTTGCAGCTTCTATCGTTTTGCATCATTTTGGAGTTTGGGCTGGATTTTCTGAGCGTG 480
Query 481 TTCGGGATGGAAGCAAATTTATAGTGGCTGATAGACCCGTAAGACAAGGAAGACGAAATT 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TCCGGGATGGAAGCAAATTTATAGTGGCTGATAGACCCGTAAGACAAGGAAGACGGAATT 540
Query 541 TCTGCGCCGGCACAGAAGAATCCGTCATTGAAGAGCGGAAGTTGAGGAAAGAAAGTGCAG 600
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 541 TCTGTGCCGGCACAGAAGAATCCATCATTGAAGAGCGGAAGTTGAGGAAAGAAAGTGCGG 600
Query 601 AAAATGGGTTTTTCGATGACAATGGAAATGAAAATGGAAGTTCATCATCCGACCTTTTGG 660
||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 601 AAAATGGTTTTTTCGATGACGATGGAAACGGAAATGGAAGTTCATCATCCGACCTTTTGG 660
Query 661 ACGGTTTGTTCCTTAACGAATAATTATCTTTTATAAAAGAACAAAGTCTTGATTTGGGTT 720
|||||||||||||| |||||||||| ||||| | ||||||||||| |||| ||||||||
Sbjct 661 ACGGTTTGTTCCTTGACGAATAATTGTCTTTGA-AAAAGAACAAAAACTTGTTTTGGGTT 719
Query 721 CCAATCCTGGGAA-A-----C--ACATCCTTCAATATATATTATCAAGCA-AGTTAGCTT 771
||||||||||||| | | ||| ||||||||||||||| |||||| |||||||||
Sbjct 720 CCAATCCTGGGAAGATGAGGCGCACACCCTTCAATATATATTGTCAAGCGGAGTTAGCTT 779
Query 772 ACTCACGCTTGTTCATTCCCTAGTTACCGAATCTTTGTTTCGCAAGTTGAGAAAGCTTAT 831
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 780 ACTCACGCTTGTTCATTCCCTAGTTACCGAATCTTCGTTTCGCAAGTAGAGAAAGCTTAT 839
Query 832 -GAATTAGGCTAAGTTGATT--TTGATT---A-T--TTGATCTGCCTTTGGTATGATACT 882
|| ||| || ||||||||| ||| || | | ||||||||||||||||||||||||
Sbjct 840 TGA-TTACGCGAAGTTGATTACTTGGTTTTGACTAATTGATCTGCCTTTGGTATGATACT 898
Query 883 ATGATTATGAACATGTTTGAAAATGATT-CAGTTGATAGAATCTCATTACGCTG 935
||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||
Sbjct 899 ATGCTTATGAACATGTTTGAAATT-ATTTCAGTTGATAGAATCTCATTCCGCTG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5