BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15540.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 1724 0.0
Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 507 1e-142
Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1 503 1e-141
Ahg947754 jgi|Araly1|947754|scaffold_703983.1 316 2e-85
> Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1
Length=1170
Score = 1724 bits (933), Expect = 0.0
Identities = 1089/1162 (94%), Gaps = 19/1162 (2%)
Strand=Plus/Plus
Query 32 AATCTATCATGAGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGT 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTATCATGAGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGT 60
Query 92 TCACTGCGATGATCGCTA-TAGAGTGTACAACGGTTGGATCCAGCATACTGTATAAAGCT 150
|| ||||||||||||| | | ||||||||||| |||||||| |||| |||||||||||||
Sbjct 61 TCGCTGCGATGATCGC-AGTGGAGTGTACAACTGTTGGATCGAGCACACTGTATAAAGCT 119
Query 151 GCTACCTTGAGAGGATTTAGCTTTTATGTCTTTGTGTTTTACGCTTATGTTGGTGCTACA 210
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 GCTACCTTAAGAGGATTTAGCTTTTATGTCTTTGTGTTTTACTCTTATGTTGGTGCTACA 179
Query 211 CTTGTCCTTCTTCTACTTTCACTTATCTTTGGAAGGTCGAGAAGTTTGCCTACAGCCAAG 270
|| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CTAGTTCTTCTTCTACTTTCCCTTATCTTTGGAAGGTCGAGAAGTTTACCTACAGCCAAG 239
Query 271 TCTTCTCTTTTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGCGGGTAGCT 330
||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TCTCCTCTCTTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGAAGGTAGCT 299
Query 331 GGTTGTAAAGGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTTGTAAAGGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACA 359
Query 391 CCAGCTTTCACCTTCATCCTTGCCATCTTCTTCAGGATGGAACAAGTAATGTTAAGAAGC 450
||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 360 CCAGCTTTCACCTTCATGCTTGCCGTCTTCTTCAGGATGGAACAAGTAGTGTTAAGAAGC 419
Query 451 TCTGCAACTCAGGCTAAAATCATTGGCACAATAGTTTCTATATCTGGTGCTCTGGTTATT 510
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 420 TCTGCAACTCAGGCTAAAATCATTGGCACAATAGTCTCTATATCTGGCGCTCTGGTTATT 479
Query 511 GTTCTGTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTACTTCATTCGAGTCAAGT 570
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 480 GTTCTGTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTACTTCGTTCGAGTCTAGT 539
Query 571 TGGATAATTGGAGGCCTTTTGCTCGGTCTGCAGTTTTTGCTTCTTTCAGTCTGGTTTATT 630
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 540 TGGATAATTGGAGGCCTTTTGCTCGGTCTGCAATTCTTGCTTCTTTCAGTCTGGTTTATT 599
Query 631 CTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGCCGTAGTCTTCTGCTACAAC 690
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGTTGTAGTCTTCTGCTACAAC 659
Query 691 TTATGCGCAACTCTAATCTCAGGGACAGTATGTCTACTTGTAGAAAAAGACTTGAATTCT 750
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 660 TTATGCGCAACGCTAATCTCAGGGATAGTATGTCTACTTGCAGAAAAAGACTTGAATTCT 719
Query 751 TGGCAGCTTAAACCAGGTTTCTCCCTCGCTTCAGTCATATACTCGGGACTCTTTGATACA 810
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGCAGCTTAAACCTGGTTTCTCCCTCGCTTCAGTCATATACTCGGGACTCTTTGATACA 779
Query 811 TCATTGGGCTCAGTTATCCACACATGGGGTCTCCATGTGAAGGGTCCAGTCTACATATCC 870
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 780 TCATTGGGCTCAGTTATCCACACATGGGGTCTTCATGTGAAGGGTCCGGTCTACGTATCC 839
Query 871 TTGTTCAAGCCGCTGTCTATCGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGAC 930
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGAT 899
Query 931 ACACTTCATCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTG 990
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCGCTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTG 959
Query 991 ATTTGGGGCAAAGCAAGAGAGGATTCAACCAAAACAGTAAGTGATTCTGAGCAATCACTT 1050
|||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||
Sbjct 960 ATTTGGGGCAAAGCAAGAGAGGATGCAACTATAACAGTAAGTGATTCTGAGCAGTCACTT 1019
Query 1051 TTATTGCCTTCACACGACAGAGAAGAAGATTGAAACCTTGTCATGAAAATATGTTGGAGA 1110
||||||||| |||| || ||| | ||||||| ||||||| |||||| |||||
Sbjct 1020 TTATTGCCT--ACAC-AC-GAG-------T--AAACCTTCTCATGAAGATATGTCGGAGA 1066
Query 1111 CAAGTGTAA-TCGTTTTCTTATTTTATTCATAATTATGGTCCCATTAGATGATGATGATC 1169
|||||| || | ||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 1067 CAAGTGAAAATATTTTTCTTATTTG-TTCATAATTATGGTCCCATTAGAAAATGA--ATC 1123
Query 1170 CCTATTTATCTTGTAAGTTGTA 1191
| ||||||||||||||||||||
Sbjct 1124 CTTATTTATCTTGTAAGTTGTA 1145
> Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710
Length=1104
Score = 507 bits (274), Expect = 1e-142
Identities = 455/540 (84%), Gaps = 22/540 (4%)
Strand=Plus/Plus
Query 550 TTT-ACTTCATTCGAGTCAAGTTGGATAATTGGAGGCCTTTTGCTCGGT-CTGCAGTTTT 607
||| ||||| || || || ||||||||||| ||||| |||||||||| | | |||| ||
Sbjct 561 TTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGCTAC-ACAGTATT 619
Query 608 TGCTTCTTTCAGTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAA 667
||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 620 TGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGAGTTATACCCTGAAGAAA 679
Query 668 TAGCCGTAGTCTTC-TGCTACAACTTATGCGCAACTCTAATCTCAGGGA-CAGTATGTCT 725
|| | ||||| ||| || ||||||||||||||| | |||||||| || | ||||||||||
Sbjct 680 TAACTGTAGTATTCTTG-TACAACTTATGCGCAGCACTAATCTC-GGCACCAGTATGTCT 737
Query 726 ACTTGTAGAAAAAGACTTGA-ATTC-TTGGCAGCTTAAACCAGGTTTCTCCCTCGCTTCA 783
| ||| ||||||||||||| | || || | |||||||| ||| ||||||| ||||||
Sbjct 738 ATTTGCGGAAAAAGACTTGACA-TCTTTTATA-CTTAAACCGGGTGTCTCCCTTGCTTCA 795
Query 784 GTCATATACTCGGGACTCTTTGATACATCATTGGGCTCAGTTATCCACACATGGGGTCTC 843
||||| ||||||||| ||| | | ||||||| ||||||||||| ||||||||||||||
Sbjct 796 GTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTATACACACATGGGGTCTG 855
Query 844 CATGTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGCTGTCTATCG-CAATTGCAGT 902
||| ||||||||||||||||||||||||||||||||||| ||||||| | || |||| ||
Sbjct 856 CATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTCA-TTGCGGT 914
Query 903 CGCCATGGCTGCTATATTCCTCGGCGACACACTTCATCTTGGGAGTGTGATTGGATCAGT 962
||| |||| || ||||||||||||||| ||||| | ||| ||||||| |||||||||||
Sbjct 915 CGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCATTGGATCAGT 974
Query 963 GATAT-TGAGCTTTGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATTCAACCA 1021
||| | ||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 975 GAT-TCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATTCAACCA 1033
Query 1022 AAACAGTAAG-TGATTCTGAGCA--A-TCACTTTTATTGCCTTCACACGAC-AGAGAAGA 1076
|||| || | |||| ||||||| | || | ||| |||||||||||| || | ||||||
Sbjct 1034 AAACTGTG-GCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTTCACAC-ACCATAGAAGA 1091
> Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1
Length=1228
Score = 503 bits (272), Expect = 1e-141
Identities = 439/519 (85%), Gaps = 14/519 (3%)
Strand=Plus/Plus
Query 43 AGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGTTCACTGCGATG 102
|||||||||| ||| | |||| ||| |||| ||||||||||| ||||| |||| |||
Sbjct 79 AGAGAAGAGAAAGTGGCGTGGAGGTATTTTACCAGAGATGTTGTGCCGTTTGCTGCTATG 138
Query 103 ATCGCTATAGAGTGTACAACGGTTGGATCCAGCATACTGTATAAAGCTGCTACCT-TGAG 161
| || | |||||||| |||||||| || | || ||||| ||| ||||| | || | ||
Sbjct 139 TTTGCGGTGGAGTGTACCACGGTTGGGTCAAACACACTGTTTAAGGCTGC-AACTATAAG 197
Query 162 AGGATTTAGCTTTTATGTCTTTGTGTTTTACGCTTATGTTGGTGCTACACTTGTCCTTCT 221
|||||| ||||| ||||||||||| || ||| ||||||||| | | |||||| |||||||
Sbjct 198 AGGATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATGTTGTTTCAACACTTCTCCTTCT 257
Query 222 TCTACTTTCACTT-ATCTTTGGAAGGTCGAGAAGTTTGCCTA-CAGCCAAGTCTTCTCTT 279
|| |||||| || |||||||||||||| ||||| || || | ||||||||||| ||||
Sbjct 258 TCCACTTTC-TTTAATCTTTGGAAGGTCAAGAAGATTACC-ATCAGCCAAGTCTCCTCTC 315
Query 280 TTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGCGGGTAGCTGGTTGTAAA 339
|||||||||||||||||||||| |||| ||||| ||| ||||| | ||||||||||||||
Sbjct 316 TTCTTCAAGATTTTCTTACTTGGGCTTGTCGGGTTCATGTCGCAGATAGCTGGTTGTAAA 375
Query 340 GGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACACCAGCTTTC 399
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 376 GGTATAGAATATAGTTCCCCAACTCTTGCCTCTGCTATCAGCAATCTCACACCCGCTTTC 435
Query 400 ACCTTCATC-CTTGCCATCT-TCTTCAGGATGGAACAAGTAATGTTAAGAAGCTCTGCAA 457
|| |||| | ||||| | | ||||||||||||||||||||| ||||||||||||||| |
Sbjct 436 ACATTCA-CGCTTGCTGT-TATCTTCAGGATGGAACAAGTAAGGTTAAGAAGCTCTGCGA 493
Query 458 CTCAGGCTAAAATCATTGGCACAATAGTTTCTATATCTGGTGCTCTGGTTA-TTGTT-CT 515
|||||||||||||||||||| ||||| | |||||||||||||||||||| | || || ||
Sbjct 494 CTCAGGCTAAAATCATTGGCGCAATACTATCTATATCTGGTGCTCTGGT-AGTT-TTGCT 551
Query 516 GTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTAC 554
|| ||||||||| || |||| | ||||||||| |||||
Sbjct 552 ATACAAAGGCCCACAAGTTCTCGCTGCTGCATCTTTTAC 590
> Ahg947754 jgi|Araly1|947754|scaffold_703983.1
Length=247
Score = 316 bits (171), Expect = 2e-85
Identities = 221/246 (90%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 814 TTGGGCTCAGTTATCCACACATGGGGTCTCCATGTGAAGGGTCCAGTCTACATATCCTTG 873
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 1 TTGGGCTCAGTTATACACACATGGGGTCTCCACCTGAAGGGTCCAGTCTACGTATCTTTG 60
Query 874 TTCAAGCCGCTGTCTATCGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGACACA 933
||||||||| ||| ||| ||||||| ||||| ||||| |||||||||| | |||||| ||
Sbjct 61 TTCAAGCCGTTGTATATAGCAATTGTAGTCGTCATGGTTGCTATATTCATTGGCGACGCA 120
Query 934 CTTCATCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTGATT 993
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTATACTGTGATT 180
Query 994 TGGGGCAAAGCAAGAGAGGATTCAACCAAAACAGTAAGTGATTCTGAGCAATCACTTTTA 1053
||||||||||||||||| ||| |||||||||||| || | ||||||| | ||||||||
Sbjct 181 TGGGGCAAAGCAAGAGAAGATGCAACCAAAACAGCAAATCTTTCTGAGTAGTCACTTTTG 240
Query 1054 TTGCCT 1059
||||||
Sbjct 241 TTGCCT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5