BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15545.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946759 jgi|Araly1|946759|scaffold_702988.1 1611 0.0
> Ahg946759 jgi|Araly1|946759|scaffold_702988.1
Length=1048
Score = 1611 bits (872), Expect = 0.0
Identities = 987/1043 (95%), Gaps = 6/1043 (1%)
Strand=Plus/Plus
Query 1 ACAGAAAACGAGAAATGTCAGAGATagaagaagaagaagaagaagGATCAGCAAGTGCAA 60
||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||
Sbjct 7 ACAGAAAACGAGAAATGTCAGAG---GTAGAAGAAGAAGAAGAAGGATCAACAAATGCAA 63
Query 61 TTACAGGTTCGAGAAGTTTCGATCTTCCCGATGAACTTCTTCAAGTTCTACCGTCCGATC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 TTACAGGTTCGAGAAGTTTCGATCTTCCCGACGAACTTCTTCAAGTTCTACCGTCCGATC 123
Query 121 CATTCGAGCAGCTAGATGTAGCTCGCAAAATCACATCCATTGCTCTCTCGACACGTGTCT 180
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 124 CATTCGAGCAGCTCGATGTAGCTCGCAAAATCACATCCATTGCTCTTTCGACACGTGTCT 183
Query 181 CAGCTCTCGAATCAGAGTCGTCGGATCTCCGGGAACTTCTCGCCGAGAAAGAAAAAGAAT 240
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 CTGCTCTCGAATCAGAGTCGTCGGATCTCCGGGAACTTCTCGCCGAGAAAGATAAAGAAA 243
Query 241 TTGAAGAACTCCAGTCTCACGTTGAGTCTCTCGAGGCTTCTCTTTCCGATGCGTTTCATA 300
| | || || || ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 244 TCGCCGAGCTACAATCTCACGTTGAGTCTCTTGACGCTTCTCTCTCCGATGCGTTTCATA 303
Query 301 AGCTTTCTCTCGCTGATGGTGAAAAGGAGAATCTGATAAGAGAAAATGCTTCTTTGTCTA 360
||||||||| ||||||||||||||||||||| | |||||||| |||||||| |||||||
Sbjct 304 AGCTTTCTCAAGCTGATGGTGAAAAGGAGAATTTAATAAGAGAGAATGCTTCGTTGTCTA 363
Query 361 ATACTGTCAAGAGACTTCAGAGAGATGTCTCAAAGCTTGAGGGTTTTAGGAAGACGCTTA 420
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 364 ATACTGTGAAGAGACTTCAGAGAGATGTCTCTAAGCTTGAGGGTTTTAGGAAGACGCTTA 423
Query 421 TGATGTCTCTTCAAGATGATGACCAAAATGCAGGAACAACGCAAATCATCGCTAAGCCGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGATGTCTCTTCAAGATGATGACCAAAATGCAGGAACAACGCAAATCATCGCTAAGCCGA 483
Query 481 CACCAAACGATGATGATACTCCATTTCAACCTTCAAGACATTCATCAATCCAATCTCAAC 540
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 484 CACCAAACGATGATGATACTCCATTTCAACCTTCAAAACATTCATCAATCCAATCTCAA- 542
Query 541 AAGCTTCTGAAGCCATTGAACCAGCTGCAACTGACAACGAAAACGATGCTCCTAAACCAA 600
||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 543 --GCTTCTGAAGCTATTGAACCAGCTACAACTGACAATGAAAACGATGCTCCTAAACCGA 600
Query 601 GTTTATCAGCTAGTCTTCCGTTAGTATCACAAACTACTACGCCACGGCTTACTCCTCCTG 660
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GTTTATCAGCCAGTTTTCCGTTAGTATCGCAAACTACTACGCCACGGCTTACTCCTCCTG 660
Query 661 GTTCTCCACCAATCTTATCTGCTTCTGGTACACCGAAAACAACTTCGAGACCTATCTCTC 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 661 GTTCTCCACCAATCTTATCTGCTTCTGGTACCCCGAAAACAACTTCGAGACCTCTCTCTC 720
Query 721 CTCGACGCCATTCTGTATCGTTCGCTACCACTAGAGGCATGTTTGATGATACTAGATCTT 780
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 721 CTCGACGCCATTCTGTATCATTTGCTACCACTAGAGGCATGTTTGATGATACTAGATCGT 780
Query 781 CTATTTCAATCTCAGAGCCTGGTTCACAAACTGCGAGAACTCGGGTTGATGGAAAAGAGT 840
|||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 781 CTATTTCAATCTCAGAGCCTGGATCACAAACCGCAAGAACTCGGGTTGACGGAAAAGAGT 840
Query 841 TCTTTCGACAAGTCAGGAGCCGATTATCTTACGAGCAATTTGGTGCATTTCTTGGAAATG 900
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 TCTTCCGACAAGTCAGGAGCCGATTATCTTACGAGCAATTTGGTGCATTTCTGGGAAATG 900
Query 901 TGAAGGATCTTAACGCCCACAAGCAAACAAGAGAAGAAACACTTAGGAAAGCTGAAGAGA 960
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 TGAAGGATCTTAACGCTCACAAGCAAACAAGAGAAGAAACGCTTAGGAAAGCTGAAGAGA 960
Query 961 TATTTGGAGGCGATAACAGAGATCTCTACGTCATATTCGAGGGCTTGATCACACGCAACG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 TATTTGGAGGCGATAACAGAGATCTCTACGTCATATTCGAGGGCTTGATCACTCGCAACG 1020
Query 1021 CTCACTAAGAGTTTGGCTTCTTC 1043
|||||| ||||||||| ||||||
Sbjct 1021 CTCACTGAGAGTTTGGATTCTTC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5