BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15550.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493327 jgi|Araly1|493327|fgenesh2_kg.7__2760__AT4G15550.1 2135 0.0
> Ahg493327 jgi|Araly1|493327|fgenesh2_kg.7__2760__AT4G15550.1
Length=1428
Score = 2135 bits (1156), Expect = 0.0
Identities = 1342/1432 (94%), Gaps = 11/1432 (1%)
Strand=Plus/Plus
Query 27 ATGGCCAACAAC---AATTCCAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 83
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCAACAACAATAATTCAAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 60
Query 84 CCAGCCCAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACAATC 143
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCAGCACAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACCATC 120
Query 144 TCTGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCTGCCTACAACCGCCGCATGTTCTCT 203
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCCGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCCGCCTACAACCGCCGCATGTTCTCT 180
Query 204 AC-AGAAAACGTCCCCGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 262
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 -CAAGAAAACGTCCCTGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 239
Query 263 TTTCAAATCCTCTGCTTACTCCGAC-AAATCTCGTCAAGACGCCACTGGAAACTTCATGT 321
||||||||||||| ||| ||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 240 TTTCAAATCCTCTACTTCCTCCG-CTAAATCCCGTCAAGACGCCACCGGAAACTTCATGT 298
Query 322 CTGAGATGAGACGACGTGGCAAAGAGACACTAACCGAACTAATCGAAGATAACCGGAAAC 381
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 299 CTGAGATGAGACGACGTGGCAAGGAGACACTAACCGAACTAATCGAAGATAACCGGAATC 358
Query 382 AAAACAGGCCTTTTACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 441
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAAACCGGCCTTTCACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 418
Query 442 CGCGTGAGTTTCATCTTCCTTCTGCTCTTCTTTGGGTCCAACCAGTAACAGTCTTCTCCA 501
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 CGCGTGAGTTTCACCTTCCTTCTGCTCTTCTTTGGGTCCAACCTGTAACAGTCTTCTCCA 478
Query 502 TTTTTTACCATTACTTCAATGGCTACGAAGATGCAATCTCAGAGATGGCTAATACCCCCT 561
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
Sbjct 479 TTTTTTACCATTACTTCAATGGCTACGAAGAAGCTATCTCAGAGATGGCTAATAACCCAT 538
Query 562 CTAGTTCTATTAAATTACCTTCTCTGCCACTGCTTACTGTCCGTGATATTCCTTCTTTCA 621
||||||||||||||||||| ||||||||||| || | | |||||||| ||||||| ||||
Sbjct 539 CTAGTTCTATTAAATTACCGTCTCTGCCACTACTCAGTCTCCGTGATCTTCCTTCATTCA 598
Query 622 TTGTCTCTTCCAATGTCTACGCGTTTCTTCTACCCGCGTTTCGAGAACAGATTGATTCAC 681
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 599 TGGTCTCTTCCAATGTCTACGCGTTTCTTCTACCGGCTTTTCGAGAACAGATTGATTCAC 658
Query 682 TGAAGGAAGAAATAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAGCCAGAAG 741
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 TGAAGGAAGAAGCAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAACCAGAAG 718
Query 742 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGT-CCCTGTCGGTCCGTTACTAACGTTG 800
|||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| |||
Sbjct 719 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGTTCCC-GTTGGTCCGTTATTAACCTTG 777
Query 801 AGAACGGATTTTTCGAGTCGCGGTGAATACATAGAGTGGTTGGATACTAAAGCGGATTCG 860
||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 AGAACCGATTCATCGAGTCACGGTGAATACATAGAGTGGTTGGATACAAAAGCGGATTCG 837
Query 861 TCTGTGCTTTATGTTTCGTTCGGGACGCTTGCCGTGTTGAGCAAGAAACAGCTTGTGGAG 920
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 838 TCTGTGCTTTACGTTTCGTTTGGGACACTTGCCGTGTTGACCAAGAAACAGCTTGTGGAG 897
Query 921 CTTTGTAAAGCGTTGATACAAAGTCGGAGACCATTCTTGTGGGTGATTACGGATAAGTCG 980
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 898 CTTTGTAAAGCGTTGATACAGAGTCGGAGACCGTTCTTGTGGGTGATTACGGACAAGTCG 957
Query 981 TACAGAAATAAAGAAGATGAGCAAGAGAAGGAAGAAGATTGCATAA-GTAGTTTCAGAGA 1039
|| |||| ||||||||||||||||||||| || ||||||||||||| | |||||||||||
Sbjct 958 TATAGAAGTAAAGAAGATGAGCAAGAGAAAGAGGAAGATTGCATAAAG-AGTTTCAGAGA 1016
Query 1040 AGAGCTCGATGAGATAGGAATGGTGGTTTCATGGTGTGATCAGTTTAGGGTTTTGAATCA 1099
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1017 AGAGCTTGATGAGATAGGAATGGTGGTTTCTTGGTGCGATCAGTTTAGGGTTTTGAATCA 1076
Query 1100 TAGATCGATAGGTTGTTTCGTGACGCATTGCGGGTGGAACTCTACGCTGGAGAGCTTGGT 1159
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1077 TAGATCGATAGGTTGTTTCGTGACTCATTGCGGGTGGAACTCGACGTTGGAGAGCTTGGT 1136
Query 1160 TTCAGGAGTTCCGGTGGTGGCGTTTCCGCAATGGAATGATCAGATGATGAACGCGAAGCT 1219
|| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1137 CTCGGGAGTTCCGGTGGTGGCGTTTCCGCAGTGGAATGATCAGATGACGAACGCGAAGCT 1196
Query 1220 TTTAGAAGATTGTTGGAAAACAGGTGTAAGAGTGATGGAGAAGAAGGAAGAAGAAGGAGT 1279
|||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 1197 TTTAGAAGATTGTTGGAAGACAGGTGTGAGAGTGATGGAGAAGAAGGAAGAGGACGGAGC 1256
Query 1280 TGTGGTGGTGGATAGTGAGGAGATACGGCGGTGCATTGAGGAAGTTATGGAAGACAAGGC 1339
||||||||||| |||| ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1257 AGTGGTGGTGGAGAGTGGGGAGATACGGCGGTGCATTGAGGAAGTGATGGAGGAGAAGGC 1316
Query 1340 GGAGGAGTTTAGAGGAAATGCCACGAGGTGGAAGGATTTAGCGGCGGAGGCTGTGAGAGA 1399
|||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 1317 GGAGGAGTTTAGAGGAAACGCGGCGAGGTGGAAGGATTTAGCGGCGGAGGCGGTGAGAGA 1376
Query 1400 AGGAGGCTCTTCCTTTAATCATCTCAAAGCTTTTGTCGATGAGCACATGTGA 1451
||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1377 AGGTGGCTCTTCCTTTAATCATCTCAAAGCTTTTGCCGATGAGCACATGTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5