BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15560.1
Length=2776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1 4032 0.0
Ahg479668 jgi|Araly1|479668|fgenesh2_kg.3__2369__AT3G21500.2 1055 0.0
Ahg493338 jgi|Araly1|493338|fgenesh2_kg.7__2771__AT4G15510.1 185 1e-45
> Ahg493326 jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1
Length=2542
Score = 4032 bits (2183), Expect = 0.0
Identities = 2430/2549 (95%), Gaps = 18/2549 (1%)
Strand=Plus/Plus
Query 228 AAATTTTATTCTCTATAAATCCTTATATGT-TTTACTTACATTCCTAAAGTTTTCAAC-T 285
||||||||||||| ||||||| |||||| | ||||||||||||| |||||||||||| |
Sbjct 1 AAATTTTATTCTCCATAAATCTTTATAT-TACTTACTTACATTCCCAAAGTTTTCAACTT 59
Query 286 T-TC-T-TGAGCTTCAAAAAGTACCTCCAATGGCTTCTTCTGCATTTGCTTTTCCTTCTT 342
| || | |||| |||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 60 TCTCTTCTGAGGTTCAAAAAGT---TGAAATGGCTTCATCTGCATTTGCTTTTCCTTCTT 116
Query 343 ACATAATAACCAAAGGAGGACTTTCAACTGATTCTTGTAAATCAACTTCTTTGTCTTCTT 402
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 117 ACATAATAACCAAAGGAGGAGTTTCAACAGATTCTTGTAAATCAACTTCTTTGTCTTCTT 176
Query 403 CTAGATCTTTGGTTACAGATCTTCCATCACCATGTCTGAAACCCAACAACAATTCCCATT 462
|| |||||||||||||||||||| |||| |||||||| | |||||||||||||||||||
Sbjct 177 CTCGATCTTTGGTTACAGATCTTTCATCGCCATGTCTCAGACCCAACAACAATTCCCATA 236
Query 463 CAAACAGAAGAGCAAAAGTGTGTGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 522
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAACAGAAGAGCAAAAGTGAATGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 296
Query 523 GACCACCAACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTTTCTG 582
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 297 GACCACCAACTCCATTACTTGACACTATTAACTATCCAATTCACATGAAAAATCTTTCTG 356
Query 583 TCAAGGAACTGAAACAACTTTCTGATGAGCTGAGATCAGACGTGATCTTTAATGTGTCGA 642
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 TCAAGGAGCTGAAACAACTTTCTGATGAGCTGAGATCAGATGTGATCTTTAATGTGTCGA 416
Query 643 AAACCGGTGGACATTTGGGGTCAAGTCTTGGTGTTGTGGAGCTTACTGTGGCTCTT-CAT 701
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 417 AAACCGGTGGACATTTGGGGTCGAGTCTTGGTGTTGTGGAGCTTACTGTGGCT-TTGCAT 475
Query 702 TACATTTTCAATACTCCACAAGACAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 761
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 476 TACATTTTCAATACTCCACAGGATAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 535
Query 762 CATAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 821
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CACAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 595
Query 822 TCTGGTTTCACCAAACGAGGAGAGAGTGAACATGATTGCTTTGGTACTGGACACAGCTCA 881
|| |||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 596 TCGGGTTTCACGAAGCGAGGAGAGAGCGAACATGATTGCTTTGGTACCGGACACAGTTCA 655
Query 882 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGAAGGGATTTGAAGGGGAAGAACAAC 941
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 656 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGACGGGATTTGAAGGGGAAGAACAAC 715
Query 942 AATGTGGTTGCTGTGATTGGTGATGGTGCGATGACGGCAGGACAGGCTTATGAAGCCATG 1001
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 716 AATGTGGTTGCTGTGATTGGTGATGGTGCAATGACGGCAGGGCAGGCTTATGAAGCCATG 775
Query 1002 AACAACGCCGGATATCTAGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 1061
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AACAACGCTGGCTATCTTGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 835
Query 1062 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGTGCATTGAGCAGTGCT 1121
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 836 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGAGCATTGAGCAGTGCT 895
Query 1122 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 955
Query 1182 ACAAAGCAAATAGGCGGACCAATGCATCAGTTGGCGGCTAAGGTAGATGAGTATGCTCGA 1241
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 956 ACAAAGCAAATAGGTGGACCAATGCATCAGTTGGCTGCTAAGGTAGATGAGTATGCCCGA 1015
Query 1242 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTCGGTCTTTACTATATTGGT 1301
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1016 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTTGGTCTTTACTATATTGGT 1075
Query 1302 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACC 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACT 1135
Query 1362 AGAACCACAGGACCTGTACTTATTCATGTGGTGACGGAGAAAGGTCGTGGTTATCCTTAC 1421
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1136 AGAACCACAGGACCGGTACTTATTCATGTGGTGACGGAGAAAGGTCGCGGTTACCCTTAC 1195
Query 1422 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTTGATCCAGCAACGGGTAGA 1481
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 1196 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTCGATCCAGCGACGGGTAAA 1255
Query 1482 CAGTTCAAAACTACTAATAAGACTCAATCTTACACAACTTACTTTGCGGAGGCATTAGTC 1541
|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1256 CAGTTCAAAAGTACTAATAAGACGCAATCTTACACTACTTACTTTGCGGAGGCATTAGTG 1315
Query 1542 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGAACC 1601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGGACC 1375
Query 1602 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTAGGAATAGCGGAA 1661
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTCGGAATAGCGGAA 1435
Query 1662 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAACCCTTCTGTGCA 1721
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1436 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAGCCCTTCTGTGCA 1495
Query 1722 ATCTATTCGTCTTTCATGCAGCGTGCTTATGACCAGGTTGTCCATGATGTTGATTTGCAA 1781
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1496 ATCTATTCATCCTTCATGCAGCGTGCTTATGACCAGGTTGTACATGATGTTGATTTGCAA 1555
Query 1782 AAATTACCGGTGAGATTTGCAATGGATAGAGCTGGACTCGTTGGAGCTGATGGTCCGACA 1841
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1556 AAATTACCAGTGAGATTTGCGATGGATAGAGCTGGACTTGTTGGAGCTGATGGTCCAACA 1615
Query 1842 CATTGTGGAGCTTTCGATGTGACATTTATGGCTTGTCTTCCTAACATGATAGTGATGGCT 1901
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1616 CATTGTGGAGCTTTTGATGTGACATTTATGGCTTGTCTTCCTAACATGATTGTGATGGCT 1675
Query 1902 CCATCAGATGAAGCAGATCTCTTTAACATGGTTGCAACTGCTGTTGCGATTGATGATCGT 1961
|||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1676 CCATCAGATGAAGCAGATCTGTTTAACATGGTTGCAACCGCTGCTGCGATTGATGATCGT 1735
Query 1962 CCTTCTTGTTTCCGTTACCCTAGAGGTAACGGTATTGGAGTTGCATTACCTCCCGGAAAC 2021
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1736 CCTTCTTGTTTCCGTTACCCTAGAGGTAATGGTATTGGAGTTGCATTACCTCCCGGTAAC 1795
Query 2022 AAAGGTGTTCCAATTGAGATTGGGAAAGGTAGAATTTTAAAGGAAGGAGAGAGAGTTGCG 2081
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1796 AAAGGTGTTCCAATTGAGATTGGAAAAGGTAGGATTTTAAAGGAAGGAGAGAGGGTTGCG 1855
Query 2082 TTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTCGAAGAA 2141
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1856 CTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTTGAAGAA 1915
Query 2142 CGCGGATTAAACGTAACTGTAGCGGATGCACGGTTTTGCAAGCCATTGGACCGTGCTCTC 2201
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1916 CGCGGATTAAACGTAACTGTAGCAGATGCACGATTTTGCAAGCCATTGGACCGTGCTCTC 1975
Query 2202 ATTCGCAGCTTAGCTAAGTCGCACGAGGTTCTGATCACGGTTGAAGAAGGTTCCATTGGA 2261
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1976 ATTCGCAGCTTAGCTAAGTCGCATGAGGTTCTGATCACGGTTGAAGAAGGTTCGATTGGA 2035
Query 2262 GGTTTTGGCTCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTTGATGGCAAACTC 2321
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2036 GGGTTTGGATCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTCGATGGCAAACTC 2095
Query 2322 AAGTGGAGACCAATGGTACTGCCTGATCGATACATTGATCACGGTGCACCAGCTGATCAA 2381
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2096 AAGTGGAGACCAATGGTACTGCCTGATCGGTACATTGATCACGGTGCACCAGCTGATCAA 2155
Query 2382 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2215
Query 2442 GCACCAAGGGAAGCTCTGTTTTGAGAGTAAGAATCTGTTGGCTAAAACATATGTATACAA 2501
|||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 2216 GCACCAAGGGAAGCTCTGTTTTGAGAACAAGAATCGGTTGGCTAAAACATATATATACAA 2275
Query 2502 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACT-GATCAGAATTCCCGCCGAGAAG 2560
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||
Sbjct 2276 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACTTGATGAAAATTCCCGCCGAAAAG 2335
Query 2561 TCCTTTGGCAACAGCTATATATATTTACTAAGATTGTGAAGAGAAAGGCAAAGGCAAAGG 2620
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 2336 TCCTTTGGCAACAGCTATATAT-TT-ACTAAGATGGTGAAGAGAAAGGCAAAGGCAAAGG 2393
Query 2621 TTGTGCAAAGATTAGTATTATGATAAAACTGGTATTTGTTTTGTAATTTT-GTTTAGGAT 2679
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 2394 TTGTGCAAAGATTAGTATTATGGTAAAACTGGTATTTGTTTTGTAATTTTTGGTTAGGGG 2453
Query 2680 TGTGATGGAGATCGTGTTGTACAATAATC-T--AACATCTTGTAAAAATCAATTACATCT 2736
|||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| |
Sbjct 2454 TGTGATGGAGATCGAGTTGTACAATAATCATCTAACATCTTGTAAAAATAAATTACATTT 2513
Query 2737 CTTTGTGTATCTTTCATAGCTTTGTGTGA 2765
|||||||||||||||||| | ||||||||
Sbjct 2514 CTTTGTGTATCTTTCATACCATTGTGTGA 2542
> Ahg479668 jgi|Araly1|479668|fgenesh2_kg.3__2369__AT3G21500.2
Length=2227
Score = 1055 bits (571), Expect = 0.0
Identities = 1029/1247 (83%), Gaps = 44/1247 (4%)
Strand=Plus/Plus
Query 1254 GGGACTGGATCGTCACTGTTTGAAGAACTCGGTCTTTACTATATTGGTCCAGTTGATGGG 1313
|||||||| || | |||||||||||||| ||||| | ||| |||||||||||||||||
Sbjct 817 GGGACTGGTTCAACTCTGTTTGAAGAACTTGGTCTCCATTATGTTGGTCCAGTTGATGGG 876
Query 1314 CACAACATAGATGATTTGGTAGCCATTCTT-AAAGAAGTTAAGAGTACCAGAA-CCACAG 1371
||||||||||||||| |||| |||||||| ||| |||| || || |||| || ||| ||
Sbjct 877 CACAACATAGATGATCTGGTCTCCATTCTTGAAA-AAGTAAAAAGCACCA-AATCCATAG 934
Query 1372 GACCTGTACTTATTCATGTGGTGACGGAGAAAGGTCGTGGTTATCCTTACGCGGAGAGAG 1431
|||| || ||||||||||| ||||| ||||||||||| || ||||| ||||| ||| |||
Sbjct 935 GACCGGTTCTTATTCATGTCGTGACTGAGAAAGGTCGCGGATATCCCTACGCAGAGGGAG 994
Query 1432 CTGATGACAAATACCATGGTGTTGTGAAATTTGATCCAGCAACGGGTAGACAGTTCAAAA 1491
|||||||||| || ||||| ||| | ||||| || |||||||| |||| |||||||||||
Sbjct 995 CTGATGACAAGTATCATGGAGTTTTAAAATTCGAACCAGCAACAGGTAAACAGTTCAAAA 1054
Query 1492 -CTACTAATAAGACTCAATCTTACACAACTTACTTTGCGGAGGCATT-AGTCGCAGAAGC 1549
| | | |||||||| | |||||| | | |||| |||||| || | | || |||||
Sbjct 1055 AC-ATTTCCAAGACTCAGTTTTACACTTCCTGTTTTGTGGAGGCCTTGACT-GCGGAAGC 1112
Query 1550 AGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGAACCGGGTTAAA 1609
||||| |||||||||| | ||||| ||||||||||||| |||||||||||| ||| ||
Sbjct 1113 AGAGGCAGACAAAGATATTGTTGCCATTCATGCAGCCACGGGAGGTGGAACAATGTTGAA 1172
Query 1610 TCTCTTTCAACGT-C-GCTTCCCAACAAGATGTTTCGATGTAGGAATAGCGGAACAACAC 1667
|||||| | | | | |||| || ||||| ||||||||||| || ||||| ||||||||
Sbjct 1173 TCTCTT-CGA-GAACCGCTTTCCTACAAGGTGTTTCGATGTTGGCATAGCAGAACAACAT 1230
Query 1668 GCAGTTACTTTTGCTGCGGGT-TTAGCCTGTGAAGGCCTTAAACCCTTCTGTGCAATCTA 1726
||||||||||| ||||| ||| || || || ||||| |||| ||||| ||| |||||||
Sbjct 1231 GCAGTTACTTTCGCTGCTGGTCTT-GCTTGCGAAGGACTTAGGCCCTTTTGTACAATCTA 1289
Query 1727 TTCGTCTTTCATGCAGCGTGCTTATGACCAGGTTGTCCATGATGTTGATTTGCAAAAATT 1786
|| ||||||||||| || |||||||| || ||||| |||||||||||| | || ||| |
Sbjct 1290 CTCTTCTTTCATGCAACGGGCTTATGATCAAGTTGTACATGATGTTGATCTACAGAAACT 1349
Query 1787 ACCGGTGAGATTTGCAATGGATAGAGCTGGACTCGTTGGAGCTGATGGTCCGACACATTG 1846
||| ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1350 ACCTGTGAGGTTTGCAATCGATAGAGCTGGACTTGTTGGAGCTGATGGTCCAACACATTG 1409
Query 1847 TGGAGC-TTTCGATGTGACATTTATGGCTTGTCTTCCTAACATGATAGTGATGGCTCCAT 1905
|||||| ||| |||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1410 TGGAGCATTT-GATGTGACGTTTATGGCATGTCTTCCAAACATGATAGTTATGGCTCCAT 1468
Query 1906 CAGATGAAGCAGATCTCTTTAACATGGTTGCAACTGCTGTTGCGATTGATGATCGTCCTT 1965
| ||||||||||| || ||||||||||||||||| |||| || |||||||| |||||||
Sbjct 1469 CTGATGAAGCAGAGCTTTTTAACATGGTTGCAACCGCTGCAGCTATTGATGACCGTCCTT 1528
Query 1966 CTTG-TTTCCGTTACCCTAGAGGTAACGGTATTGGAGTTGCA-TTACCTCCCGGAAACAA 2023
|||| |||| | || | |||||| |||||||| || ||| || || ||||| || |||||
Sbjct 1529 CTTGCTTTC-GATATCATAGAGGAAACGGTATCGGTGTTTCACTT-CCTCCAGGCAACAA 1586
Query 2024 AGGTGTTCCAATTGAGATTGGGAAAGGTAGAATTTTAAAGGAAGGAGAGAGAGTTGCG-T 2082
|||||| || || |||||||||||||||| || ||| |||||| ||||| |||||| |
Sbjct 1587 AGGTGTCCCTCTTCAGATTGGGAAAGGTAGGATACTAAGGGAAGGCGAGAGGGTTGCGCT 1646
Query 2083 TGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAG-GAGCGGCTG-TAATGCTC-GAAG 2139
| ||||| || || ||||||||||| || ||||||| || | ||| || |||| | |
Sbjct 1647 T-TTGGGCTACGGATCAGCAGTTCAAAGATGTTTAGAGA-CTGCTTCTA-TGCTTAGC-G 1702
Query 2140 AACGCGGATTAAACG-TAACTGTAGCGGATGCACGGTTTTGCAAGCCATTGGACCGT-GC 2197
||||||||||||| | ||||||||||||||||| | ||||| |||||||| || || ||
Sbjct 1703 AACGCGGATTAAA-GATAACTGTAGCGGATGCAAGATTTTGTAAGCCATTAGAT-GTTGC 1760
Query 2198 TCTCATTCGCAGCTTAGCTAAGTCGCACGAGGTTCTGATCACGGTTGAAGAAGGTTCCAT 2257
||||||||| ||||||||||| || ||||||||| | |||||||||||||||||||| ||
Sbjct 1761 TCTCATTCGTAGCTTAGCTAAATCACACGAGGTTTTAATCACGGTTGAAGAAGGTTCGAT 1820
Query 2258 TGGAGGTTTTGGCTCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTTGATGGCAA 2317
|||||| ||||| ||||| || || || |||||||| || |||||||||||||| || ||
Sbjct 1821 TGGAGGATTTGGATCGCATGTGGTACAATTTCTTGCACTTGATGGTCTTCTTGACGG-AA 1879
Query 2318 A-CTCAAGTGGAGACCAATGGTACTGCCTGATCGATACATTGATCACGG-TGCACCAGCT 2375
| ||||||||||| ||||||||||| ||||| || || || || ||||| | ||||| |
Sbjct 1880 AGCTCAAGTGGAGGCCAATGGTACTACCTGACCGGTATATCGAACACGGAT-CACCAA-T 1937
Query 2376 G-ATCAACTAGCTGAAGCTGGACTCAT-GCCATCTCACATCGCAGCAACCGCACTTAACT 2433
| ||||||| ||||||||||| |||| || ||||| || ||||| || ||||||||||
Sbjct 1938 GGATCAACTGGCTGAAGCTGGCCTCACAGCG-TCTCATATTGCAGCCACAGCACTTAACT 1996
Query 2434 TAATCGGTGCACCAAGGGAAGCTCT-GTTTTGAGAGTAA-GA-ATCT 2477
|||| || |||| || ||||| || |||||| |||||| || ||||
Sbjct 1997 TAATGGGAACACCTAGAGAAGC-CTTGTTTTGGGAGTAATGAGATCT 2042
Score = 592 bits (320), Expect = 6e-168
Identities = 535/640 (84%), Gaps = 10/640 (2%)
Strand=Plus/Plus
Query 493 TTGCAGAGAAGGGTGAATATTATTCAAACAGACCACCAACTCCATTACTTGACACTATTA 552
|||||||||| |||||||||||||||| |||||||||||||| ||||| ||||| || |
Sbjct 179 TTGCAGAGAAAGGTGAATATTATTCAAGTAGACCACCAACTCCTTTACTGGACACAATCA 238
Query 553 ACTACCCAATCCACATGAAAAATCTTTCTGTCAAGGAACTGAAACAACTTTCTGATGAGC 612
|| | ||||| |||||||| ||||| || |||| ||||| ||| |||||||| |||
Sbjct 239 ACCATCCAATGCACATGAAGAATCTGTCCATCAAAGAACTCAAAGTTCTTTCTGACGAGT 298
Query 613 TGAGATCAGACGTGATCTTTAATGTGTCGAAAACCGGTGGACATTTGGGGTC-AAGTCTT 671
||||||| || || ||||| ||||| || ||||| || ||||| ||||| || || |||
Sbjct 299 TGAGATCTGATGTTATCTTCAATGTTTCAAAAACTGGAGGACACTTGGGTTCGAA-TCTG 357
Query 672 GGTGTTGTGGAGCTTACTGTGGCTCTTCATTACATTTTCAATACTCCACAAGACAAGATT 731
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 358 GGTGTTGTTGAGCTCACTGTGGCCCTTCATTACATCTTCAATACTCCTCAAGATAAGATC 417
Query 732 CTTTGGGATGTTGGTCATCAGTCTTATCCTCATAAGATTCTTACTGGGA-GAAGAGGAAA 790
|||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||
Sbjct 418 CTTTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAAC-GGGAAGAAGAGGAAA 476
Query 791 GATGCCTACAATGAGGCAAACCAATGGTCTCTCTGGTTTCACCAA-ACGAGGAGAGAGTG 849
|||| ||||| ||||| ||| |||| ||||| || | |||||| | || |||||||||
Sbjct 477 GATGAAGACAATAAGGCAGACCGATGGCCTCTCCGGCTACACCAAGA-GAAGAGAGAGTG 535
Query 850 AACATGATTGCTTTGGTACTGGACACAGCTCAACCACAATATCTGCTGGTTTAGGAATGG 909
| ||||| | |||||| || || ||||| || |||||||||||||| || ||||| ||||
Sbjct 536 AGCATGACTCCTTTGGCACCGGGCACAGTTCTACCACAATATCTGCAGGCTTAGGGATGG 595
Query 910 CGGTAGGAAGGGATTTGAAGGGGAAGAACAACAATGTGGTTGCTGTGATTGGTGATGGTG 969
| || || |||||||||||||||| |||||||| |||||||| || || || ||||| |
Sbjct 596 CTGTGGGCAGGGATTTGAAGGGGATGAACAACAGCGTGGTTGCGGTTATAGGCGATGGCG 655
Query 970 CGATGACGGCAGGACAGGCTTATGAAGCCATGAACAACGCCGGATATCT-AGACTCTGAT 1028
| ||||| || ||||| ||||||||||| |||||||| || || || || |||||||||
Sbjct 656 CAATGACAGCTGGACAAGCTTATGAAGCTATGAACAATGCTGGCTA-CTTAGACTCTGAC 714
Query 1029 ATGATTGTGATTCTTAATGACAACAAGCAAGTCTCATTACCTACAGCTA-CTTTGGATGG 1087
|||||||||||||| || ||||| || |||||||| || ||||| |||| ||||| ||||
Sbjct 715 ATGATTGTGATTCTCAACGACAATAAACAAGTCTCTTTGCCTACTGCTAACTTTG-ATGG 773
Query 1088 ACCAAGTCCACCTGTTGGTGCATTGAGCAGTGCTCTTAGT 1127
||||| |||||||||||| || |||||| ||||||| |||
Sbjct 774 ACCAACTCCACCTGTTGGAGCTTTGAGCTGTGCTCTAAGT 813
> Ahg493338 jgi|Araly1|493338|fgenesh2_kg.7__2771__AT4G15510.1
Length=1071
Score = 185 bits (100), Expect = 1e-45
Identities = 149/171 (87%), Gaps = 9/171 (5%)
Strand=Plus/Plus
Query 262 CTTACATTCCTAAAGTTTTCAACTTTCT-TGAGCTTCAAAAAGTAC-CTCCAATGGCTTC 319
|||||||||| |||| |||||| ||| | ||||||||||||| | | || |||||||||
Sbjct 37 CTTACATTCCCAAAG-TTTCAA-TTTTTCTGAGCTTCAAAAA-TCCACTTTAATGGCTTC 93
Query 320 TTCTGCATTTGCTTTTCCTTCTTACATAATAACCAAAGGAGGACTTTCAACTGATTCTTG 379
|||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||
Sbjct 94 ATCTGCATTTGCTTTTCCTTCTTACATAATAACCATAGGAG--CTT-CAACAGATTCTTG 150
Query 380 TAAATCAACTTCTTTGTCTTCTTCTAGATCTTTGGTTACAGATCTTCCATC 430
||| |||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 151 CAAACCAACTTCTCTGGCTTCTTCTCGATCTTTGGTTACAGAT-TTCCATC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104748173750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5