BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15563.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329955 jgi|Araly1|329955|fgenesh1_pm.C_scaffold_7002182 721 0.0
> Ahg329955 jgi|Araly1|329955|fgenesh1_pm.C_scaffold_7002182
Length=504
Score = 721 bits (390), Expect = 0.0
Identities = 468/506 (92%), Gaps = 4/506 (1%)
Strand=Plus/Plus
Query 312 ATGCAACACAAGGAAATGGCATCAAGAGCTTCCGAGGTGATTAAATATGTGACTAAGT-C 370
||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||| |
Sbjct 1 ATGCAGCACAAGGAAATGGCATCTAGAGCTTATGAGGTGATTACATATGTGACTAA-TAG 59
Query 371 TCCTGCTACGTTGTCTTTAGAGGCAGGTATATATCTGCACGCGGTTGAAACCATGAGCTC 430
|||||||||||||||| ||||||| |||| ||||||||| || |||||||||||||||||
Sbjct 60 TCCTGCTACGTTGTCTCTAGAGGCCGGTAAATATCTGCAGGCAGTTGAAACCATGAGCTC 119
Query 431 GATGCGGTTTGGATTTCAAGATGTGGAGTTATTTTTCTTCAAACCAAACTTAAGTGTGCT 490
||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 120 GATGCGGTTAGGATTTCAAGATGTGGAGTTATTTCTCTTCAAACCAAACTTGAGTGTGCT 179
Query 491 GCTCAACCTCATTGGACTCATTTACTGCATACAACACTTGAAACCGCGGCGAGAGCAAGT 550
|||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||| |
Sbjct 180 GCTCAATCTCATTGGACTCATCTACTGCATACAACACTTGAAACCGTTGCGAGATCAAAT 239
Query 551 CGTGGATGTGCTA-AGGCAATGTGGAATCTCAGAGCAGCTAGTTTGGGTGAAATGGTTAA 609
| |||||| |||| | || ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 240 CTTGGATGCGCTACA-GCGATGTGGAATCTCACAGCAGCTAGTTTGGGTGAAATGGTTGA 298
Query 610 CGTTAGGTCGATGGTCAGGTGGGAGTCGAATGAGAGACGACATCGTGTCGCGTCAGGTCT 669
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 299 CGTTAGGTCGATGGTCAGGTGGGAGAAGAATGAGAGACGAAATCGTGTCGCGTCAGGTCT 358
Query 670 CTCTAGTCGATGTTGTAACAGGGAAAGAAGAAACGGTTCTACGAGTGCTTCAACGAGGAG 729
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 CTCTAGTCGATGTTGTAACAGGGAAAGAAGAGACGGTTCTACGAGTGCTTCAACGAGGAG 418
Query 730 TTGTTCACGAAGTTCTACGTGTTTGTATCTCAACCGTTGATCTTGCCTGTGCACCTTGCA 789
||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||||
Sbjct 419 TTGTTCACGAAGTTCTACGCGTTTGTATCTCGACCGTTGATCTTGCGTGTACGCCTTGCA 478
Query 790 GCAGTAGCACCATCAGAAACTACTAA 815
||||||||||||||||||||||||||
Sbjct 479 GCAGTAGCACCATCAGAAACTACTAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5