BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15590.1
Length=7011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946753 jgi|Araly1|946753|scaffold_702982.1 630 3e-179
> Ahg946753 jgi|Araly1|946753|scaffold_702982.1
Length=1591
Score = 630 bits (341), Expect = 3e-179
Identities = 451/502 (90%), Gaps = 16/502 (3%)
Strand=Plus/Plus
Query 6520 CCGCTTATATGAACACCGTTCTTGAGGGTTTTCTTGAACGTATTCTAT-GGATCGTGTTC 6578
|||| ||||||| | || ||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1072 CCGCCTATATGACCGCCATTCTTGAGGCTTTTCTCGAACGTATTCTATGGGATCATGTTC 1131
Query 6579 -GCGAGCATAAGTGGCTTGAAGGAGGGGAGAATTCTATGATTGAGTGGCATAATTCTGTG 6637
| |||| ||| |||||||| ||||||||||||||||||||||| |||||||| |||| |
Sbjct 1132 AG-GAGCTTAAATGGCTTGATGGAGGGGAGAATTCTATGATTGAATGGCATAACTCTGCG 1190
Query 6638 TCCAAAGATTTTGTGGAGGATCAAGAGTTGCTACCTAAGCTTGAAATGCCTCCTCCT--A 6695
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |
Sbjct 1191 TCCAAAGATTTTGTGGAGGATCATGAGTTGCTACCTATGCTTGAAATGTCTCCTCCTGCA 1250
Query 6696 -CA---CCTCCACAAAAGAGACCAGAGTTGGATGAGTCAGCCCTTGTTCCACTTGAGCCA 6751
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CCACTTCCTCCACAGAAGAGACCAGAGTTGGATGAGTCAGCCCTTGTTCCACTTGAGCCA 1310
Query 6752 GAAGACCAGTTTCTTGCCCAACATGAGGGTTTGTCTATTTTCAGGGTGATTTGTGTTCCC 6811
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1311 GAAGACCAGTTTCTTGCACAACATGAGGGTTTGTCTATAATCAGGGTGATTTGTGTTCCC 1370
Query 6812 GACGGAGGGGAAGTCATTAAGATCACAGTGCAGTCATTGTCTGAAAACGTAGCAAGTTTG 6871
||||| | |||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1371 GACGG-GC--AAGTAATTAAGATCACAGTGCAGTCGTTGTCCGAAAACGTAGCAAGTTTG 1427
Query 6872 AAGGAGAAAATAGCTGAGGTGGTTCAAATTCAAGCAAACAAACAGACGTTAAGGGGGT-T 6930
||||||||||||||||||||||| || |||| |||||||||||| | |||||| || |
Sbjct 1428 AAGGAGAAAATAGCTGAGGTGGTCCAGATTCCAGCAAACAAACACATGTTAAGTGGAAAT 1487
Query 6931 AAGAGCGGTTTTAAAGGACAATAATAGGTCACTTGCTTATTACAATGTGAAAGCAGGAGA 6990
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1488 A-GAGCGGTTTTAAAGGACAATGATAGGTCACTTGCTTATTACAATGTGAAATCAGGAGC 1546
Query 6991 TATTCT-AATACTGGACGTGGT 7011
||| || |||||||||||||||
Sbjct 1547 TAT-CTTAATACTGGACGTGGT 1567
Score = 279 bits (151), Expect = 1e-73
Identities = 193/213 (91%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 6309 AGGGTCCAGTCTCAAAGACTTGTTCTGCCTAATCTTCTACAGTGTAGACTTCTTAAAGGG 6368
||||| |||||||||||||||| |||||||||| ||||| | |||||| ||||| |||||
Sbjct 789 AGGGTTCAGTCTCAAAGACTTGATCTGCCTAATTTTCTAGATTGTAGAGTTCTTGAAGGG 848
Query 6369 ATGAC-CTTC-ACCGAGCTTGATACTGTTAAGGTCACAGCTCAGTTTGTGGCGTGGTATG 6426
||||| | || | ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 849 ATGACGC-TCGA-GGAGCTTGATACCGTTAAGGTCACAGGGCAGTTTGTGGCGTGGTATG 906
Query 6427 GGGATGCTTTTCGTGGGAAACTGATGGAAAGAGTGATGATGGACAATCAGTTTGAGTTTA 6486
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 907 GGGATGTTTTTCGTGGGAAACTGATGGAAAGAGTGATGATGAACCATCAGTTTGAGTTTA 966
Query 6487 TGAAGCAAACTGATTACATGTTCGCTTTCTTCA 6519
|||||||||||||||||| |||| |||||||||
Sbjct 967 TGAAGCAAACTGATTACAGGTTCTCTTTCTTCA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 265794089832
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5