BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15610.1
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946749 jgi|Araly1|946749|scaffold_702978.1 977 0.0
> Ahg946749 jgi|Araly1|946749|scaffold_702978.1
Length=627
Score = 977 bits (529), Expect = 0.0
Identities = 595/627 (95%), Gaps = 3/627 (0%)
Strand=Plus/Plus
Query 79 TAACAATTCAAGATTAAGCTATGGG-T-T-ATGAAACCAAATCGACTTTGGACACCGAGA 135
|||||| ||||||||||| |||||| | | |||||||||||||||| |||||||||||||
Sbjct 1 TAACAAATCAAGATTAAGTTATGGGTTCTGATGAAACCAAATCGACGTTGGACACCGAGA 60
Query 136 GATCGACCGCGCCAGGAACCGGCACCACGACGAAGAGTTGTTCGATGACTCAAGTTGTCC 195
|||| |||| |||||||| |||||| ||||| |||||||||| |||||||||||||||||
Sbjct 61 GATCAACCGTGCCAGGAAGCGGCACAACGACAAAGAGTTGTTGGATGACTCAAGTTGTCC 120
Query 196 TAAGATTTGTTCTGTTTGCAGCCACTTTGACATCAATAGTGGTAATGGTTACAAGTAAAC 255
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAAGATTCGTTCTGTTTGCAGCCACTTTGACATCAATAGTGGTAATGGTTACAAGTAAAC 180
Query 256 AGACCAAGAATATATTCCTTCCTGGAACTCCCATTCGTATTCCTGCTGCAGAGTTCACCA 315
|||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AGACCAAGAACATTTTCATTCCTGGAACTCCCATTCGTATTCCTGCTGCAAAGTTCACCA 240
Query 316 ACTCACCGGCTCTTATATACTTTGTGGTAGCATTATCCGTGGCATGCTTTTACAGCATTG 375
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 241 ACTCACCGGCTCTTATATACTTTGTGGTAGCATTATCGGTGGCTTGCTTTTACAGCATTG 300
Query 376 TATCTACATTTGTCACCGTATCTGCTTTCAAGAAGCATTCCTGCTCTGCGGTTCTCTTGC 435
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TGTCTACATTTGTCACCGTATCTGCTTTCAAGAAGCATTCCTGCTCTGCGATTCTCTTGC 360
Query 436 TAAATCTTGCCATTATGGATGCGGTGATGGTGGGGATAGTGGCCTCAGCAACCGGGGCAG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TAAATCTTGCCATTATGGATGCGGTGATGGTGGGGATAGTGGCCTCAGCAACCGGAGCAG 420
Query 496 GAGGTGGAGTAGCTTACCTTGGTCTGAAGGGAAACAAAGAAGTTAGATGGGGCAAAATCT 555
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 GAGGTGGAGTAGCTTACCTTGGTCTGAAGGGAAACAAAGAAGTGAGATGGGGCAAAATCT 480
Query 556 GTCATATCTACGACAAGTTTTGCCGTCATGTTGGAGGAGCAATCGCCGTCTCATTGTTTG 615
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 481 GTAATATCTACGACAAGTTTTGCCGTCATGTCGGAGGCGCAATCGCCGTCTCATTGTTTG 540
Query 616 CTTCGGTTGTCCTCCTCCTCCTATCCATCATCTCTGTCCTCTCCCTCTACAAGAAAATCC 675
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTCGGTCATCCTCCTCCTCCTCTCCATCATCTCTGTCCTCTCCCTCTACAAGAAAATCC 600
Query 676 GTTGAGTCACTCTCTTTGTTTCGTTGT 702
||||| ||||| || ||||||||||||
Sbjct 601 GTTGATTCACTTTCCTTGTTTCGTTGT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35149329474
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5