BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15630.1
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493322 jgi|Araly1|493322|fgenesh2_kg.7__2755__AT4G15630.1 1105 0.0
Ahg493323 jgi|Araly1|493323|fgenesh2_kg.7__2756__AT4G15620.1 658 0.0
> Ahg493322 jgi|Araly1|493322|fgenesh2_kg.7__2755__AT4G15630.1
Length=785
Score = 1105 bits (598), Expect = 0.0
Identities = 733/795 (92%), Gaps = 22/795 (3%)
Strand=Plus/Plus
Query 52 CTCTTTCCTCTCATTTTGACCCTCTTCACTTCTTTTTGATCCCTAAATGGAACACGAGAG 111
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTTCTTCTCATTTTGACTCTCTTCACTTCTTTTTGATCCCTAAATGGAACACGAGAG 60
Query 112 CAAGAACAAGGTGGATGGGATGGAGATGGAGAAAGGaaaaaaaGAGAGTGGGTCGAGAAA 171
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAAGACCAAAATGGATGGGATGGAGATGGAGAAAGGAAAAAAAGAGAATGGGTCGAGAAA 120
Query 172 AGGACTTGAGTTAACGATGAGAGTTTTGGCTTTGGTCCTAACAATGGTAGCTGCGACAGT 231
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAGTTGAGATAACGATGAGAGTGCTGGCTTTGGTCCTAACAATGGTAGCTGCGACAGT 180
Query 232 ACTTGGTGTTGCGAAACAAACAAAGGTTGTGCCTATAAAGCTTATTCCTACTTTACCTCC 291
||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 181 ACTTGGTGTCGCGAAACAGACAGAGGTTGTACCTATAAAGCTTATTCCTACTTTGCCTCC 240
Query 292 TCTTAATGTCTCTACAACCGCCAAAGCCTCTTACTTGTCTGCTTTTGTGTACAACATTTC 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTAATGTCGCTACAACCGCCAAAGCCTCTTACTTGTCTGCTTTTGTGTACAACATTTC 300
Query 352 TGCAAACGCGATAGCTTGCGGTTACACCGCGATCTCAATAGTGATTGTGATGATCAGCAA 411
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 301 TGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGTGAGTGTGATGATCAGCAA 360
Query 412 AGGCAAAAGAAGCAAAAGTTTGTTGATGGCGGTCTTGATAGGAGATCTTATGATGGTGGC 471
||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 361 AGGCAGAAGAAGCAAAGGCTTGTTAATGGCGGTATTGATAGGAGATCTTATGATGGTGGC 420
Query 472 TTTACTGTTTTCCAGCACTGGAGCCGCCGGAGCAATCGGGCTAATGGGTAGGCATGGGAA 531
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTACTATTTTCGAGCACCGGAGCCGCCGGAGCAATCGGGCTAATGGGTAGGCATGGGAA 480
Query 532 CAAACATGTTATGTGGAAAAAAGTTTGTGGAGTGTTTGGCAAATTCTGTAACCAAGCTGC 591
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAACATGTTATGTGGAAGAAAGTTTGTGGAGTGTTTGGCAAATTCTGTAACCAAGCTGC 540
Query 592 TGTTTCTGTTGCTATCACTCTTATTGCTTCAGTTGTGTTTATGCTTCTTGTTGTTCTTGA 651
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TGTTTCTGTTGCTATCACTCTTATTGCTTCAGTTGTTTTTATGCTTCTTGTTGTTCTTGA 600
Query 652 TGCTTTGAAACTTCCTTAAT--CTTAAGTACACGCAACTTTAAACCAGAAAA-CACAAAA 708
||||||||| |||||||||| |||||||| || | |||| |||||||||| |||| ||
Sbjct 601 TGCTTTGAAGCTTCCTTAATTTCTTAAGTAAAC-C--CTTTTAACCAGAAAAACACAGAA 657
Query 709 TAAGTTTT-TTCTCTTAATTTGCATGTTTCTATTTCTTGTCGTTTTTTGTGTTATGTAAA 767
|| |||| || |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 658 CAAATTTTCTT-TCTTAATTTGCATGTTTCTATTTCTTGTCGTTTT--GTGTTATGTGAA 714
Query 768 GTCATTA-TCATCA--AT---TA-TGTAGTTGTCTATTTGTTTGtttttttAA-GTTTTA 819
||||||| |||| | || || |||| |||||||||||||| |||| || ||||||
Sbjct 715 GTCATTACTCATTATCATCAATAATGTAATTGTCTATTTGTTT-TTTT---AACGTTTTA 770
Query 820 AATTTCATTGCCTAT 834
|||| ||||| ||||
Sbjct 771 AATTCCATTGTCTAT 785
> Ahg493323 jgi|Araly1|493323|fgenesh2_kg.7__2756__AT4G15620.1
Length=752
Score = 658 bits (356), Expect = 0.0
Identities = 512/586 (87%), Gaps = 15/586 (3%)
Strand=Plus/Plus
Query 97 AATGGAACACGAGAGCAAGAACAAGGTGGATGGGATGGAGATGGAGAAAGGaaaaaaaGA 156
|||| |||||||| |||||||||| || ||||||||||||||||||||||||| | |||
Sbjct 66 AATGAAACACGAGGGCAAGAACAATATGAATGGGATGGAGATGGAGAAAGGAAAGAGAGA 125
Query 157 GAGTGGGTCGAGAAAAGGACTTGAGTTAACGATGAGAGTTTTGGCTTTGGTCCTAACAAT 216
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 126 GAGTGGGTCGAGAAAAGGAGTTGAGTTAACGATGAGAGTGTTGGCTTTGGTCCTAACAAT 185
Query 217 GGTAGCTGCGACAGTACTTGGTGTTGCGAAA-CAAACAAAGGTTGTGCCTATAAAGCTTA 275
|| ||||| |||||||||||||| || ||| ||||||||||||||| |||| |||||||
Sbjct 186 GGCGGCTGCAACAGTACTTGGTGTCGC-AAAGCAAACAAAGGTTGTGTCTATTAAGCTTA 244
Query 276 TTCCTACTTTACCTCCTCTTAATGTCTCTACAACCGCCAAAGCCTCTTACTTGTCTGCTT 335
|||| |||| ||||||||| || || |||||||||||||||||||||||||||| || |
Sbjct 245 TTCCCGCTTTGCCTCCTCTTGATATCACTACAACCGCCAAAGCCTCTTACTTGTCGGCCT 304
Query 336 TTGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACCGCGATCTCAATAGTGA 395
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 305 TTGTGTACAACATTTCTGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGCGA 364
Query 396 TTGTGATGATCAGCAAAGGCAA-AAGAAGCAAAA-GTTTGTTGATGGCGGTCTTGATAGG 453
|| |||||||||| | || || ||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 365 TTCTGATGATCAGTAGGGG-AAGAAGAAGCAAAAAGTT-GTTAATGGCGGTTTTGCTAGG 422
Query 454 AGATCTTA-TGATGGTGGCTTTACTGTTTTCCAG-CACTGGAGCCGCCGGAGCAATCGGG 511
|||||| | | ||||||||||| |||||||| || ||| ||||||||| | ||||| |||
Sbjct 423 AGATCT-AGTAATGGTGGCTTTGCTGTTTTC-AGGCACCGGAGCCGCCAGCGCAATTGGG 480
Query 512 CTAATGGGTAGGCATGGGAACAAACATGTTATGTGGAAAAAAGTTTGTGGAGTGTTTGGC 571
||||||||| ||| |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 481 CTAATGGGTTTGCAAGGGAACAAGCATGTTATGTGGAATAAAGTTTGTGGCGTTTTTGGA 540
Query 572 AAATTCTGTAACCAAGCTGCTGTTTCTG-TTGCTATCACTCTTATTGCTTCAGTTGTGTT 630
||||||||| ||| ||||||| ||| | || || ||||| || ||||| ||||||||||
Sbjct 541 AAATTCTGTCACCGAGCTGCTCCTTC-GCTTCCTCTCACTTTTCTTGCTGCAGTTGTGTT 599
Query 631 TATGCTTCTTGTTGTTCTTGATGCT-TTGAAACTTCCTTAATCTTA 675
|||| |||||||||||||||||||| || || ||||| |||| |||
Sbjct 600 TATGTTTCTTGTTGTTCTTGATGCTATT-AAGCTTCCCTAAT-TTA 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5