BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15640.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493321 jgi|Araly1|493321|fgenesh2_kg.7__2754__AT4G15640.1 1982 0.0
Ahg905172 jgi|Araly1|905172|Al_scaffold_0003_2300 957 0.0
> Ahg493321 jgi|Araly1|493321|fgenesh2_kg.7__2754__AT4G15640.1
Length=1379
Score = 1982 bits (1073), Expect = 0.0
Identities = 1264/1353 (93%), Gaps = 26/1353 (2%)
Strand=Plus/Plus
Query 59 AACCAGTAG-AATCACGAGTCATGCAATTCCTCCAGAACTCTCGTAGAATCGCTACGGTC 117
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1 AACCAGT-GAAATCACGAGTCATGCAATTTCTCCAGAACTCTCGTAGAATCGCTAAGGTC 59
Query 118 TTAAAACCCATTGTTACCACCGAGACTAATCTGAGATTCTTCTCCTCTGCTTCTCAAATC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAAAACCCATTGTTACCACCGAGACTAATCTGAGATTCTTCTCCTCTGCTTCTCAAATC 119
Query 178 TCAAGATCCTTCCAATGGCGGAGTCAAGCATCTTCGTCTTCCTCTGTATTAAAAGGGATT 237
||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 120 TCAAGTTCCTTTCAATGGCGGAATCAAGCGTCTGCGTCTTCCTCTGTATTAAAAGGGATT 179
Query 238 GATAGTA-GTAGTCACTTGTCCTCTATGAGCTTGTTGATCCCCAGATCGAGCTTTACGTC 296
||||| | ||||||||| ||| |||||||||||| |||||||||||||||||||| | ||
Sbjct 180 GATAG-ATGTAGTCACTCGTCTTCTATGAGCTTGCTGATCCCCAGATCGAGCTTTTCTTC 238
Query 297 TGAAGCGGAAAAGCTTGCGGGAAATCCTACAGTGACTGTGAAGGATTTGCATGATAAAAT 356
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 TGAAGCGGAAAAGCTCGCGGGAAATCCTACAGTGACTGTCAAGGATTTGCATGATAAAAT 298
Query 357 GCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGTGGCT-GTTGA 415
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 299 GCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGTGG-TCGTTGA 357
Query 416 TTGAGAACTGTCAGAATCAGGATGATATTCATCTTCTCTTTGACGTTCTTCAGAATCTAC 475
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 358 TTGAGAACTGTCAGAATCAGGATGACATTCATCTTCTCTTCGACGTGCTTCAGAATCTAC 417
Query 476 GGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCAATCTATGCCAAC 535
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 GGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCAATTTATGCCAAC 477
Query 536 AAGTTGCTAAGACTTGTGTACGTGTTGGGGCTATTGACTCTGGAAAGAAGGCTTTGTGGA 595
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 AAGTTGCTAAGACTTGTGTACGTGTTGGGGCAATTGACTCTGGAAAGAAGGCTTTGTGGA 537
Query 596 AACATAATGTTCACGGTTTGACTCCCAGTGTTGCATCTGCACACCATCTTA-TGTCATAT 654
||||||||||||| |||||||| ||||||||| ||||||||||||||| || |||| ||
Sbjct 538 AACATAATGTTCATGGTTTGACACCCAGTGTTTCATCTGCACACCATC-TATTGTCGCAT 596
Query 655 GCACTAGAGCACAAGAATTCTGAACTCATGGAAGAAGTAATGCAACTCCTGAAAACGAAT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 GCACTAGAGCACAAGAATTCTGAACTCATGGAAGAAGTAATGCAACTCCTGAAAACAAAT 656
Query 715 GATCTGCCTCTACAACCCGGTACAGCAGATTTAGTTTTTAGGATCTGTCATGATACAGAT 774
||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 657 GATTTGCCTCTACAACCGGGTACAGCAGATTTAGTTTTCAGGATCTGTCGTGATACAGAT 716
Query 775 AAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAGCTGGAGTTAAGTTGAGG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAGCTGGAGTTAAGTTGAGG 776
Query 835 AAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAGGTGATACAGAGTCGCTA 894
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 777 AAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAGGGGATACCGAGTCGCTA 836
Query 895 TGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACACTCTTTCTACTGCCTTT 954
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 TGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACACACTTTCTACTGCCTTT 896
Query 955 TCTTGTGCAAAGGGTTTCCTACTAGAAAGTAAACCTGAAGAAGCTGCTGCCGTCATCCAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCTTGTGCAAAGGGTTTCCTACTAGAAAGTAAACCTGAAGAAGCTGCTGCCGTCATCCAG 956
Query 1015 ATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCTGCAATTTCGACTGAATTTGAGAAA 1074
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 957 ATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCAGCGGTTTCGACTGAATTCGAGAAA 1016
Query 1075 CTTGTAAACGAGTGGCCTGTGGACGTTATCAAGCACCAAACCG-ACGAAGATAAGAAGGC 1133
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1017 CTTGTAAATGAGTGGCCTGTGGACGTTATCAAGCACCAAACCGGA-GAAGATAAGAAGGC 1075
Query 1134 TCTT-GCTGCTTCATTGAAATCTGTGATTCCTTCAATGGTTAATACATTGCTAAGCTCGG 1192
| || ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1076 T-TTAGCTGCTTCATTGAAATCTGTGATTCCTTCCATGGTTAATGCATTGCTAAGATCGG 1134
Query 1193 GTTTAAAAGTGAGCGTGGATCTGGATGAGTTAAACAAGAACGAAGCTCTTCTCAGCTGAA 1252
|||| || |||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTTTGAACGTGAACGTGGATTTAGATGAGTTAAACAAGAACGAAGCTCTTCTCAGCTGAA 1194
Query 1253 TGGTTGA-A-TCAAGATTTGCAG-AATCTCTTG-GCGGCTCCACATGAACACATTCTTGT 1308
|| || | | | ||| | ||| || | | | | | | | ||||||||||
Sbjct 1195 TGATTCATAGTAAAGGTG-GCAACAA-CG-TAGAGAAGAGGGA-ACGAACACATTC---- 1246
Query 1309 CCAGTTTCTTGCATCCTACGGTAACTCATTTTCTCATTTTGACCTATATGAACAAAACGC 1368
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1247 --AGTTTCTTGCATCCTACGATAACTCATTTTCTCGTTTTGACCTATATGAACAAAACGA 1304
Query 1369 CAAGAGTTGTCCTGTTTTGTAAGCCTCAAATAA 1401
|||||||||||||||||||||||||||||||||
Sbjct 1305 CAAGAGTTGTCCTGTTTTGTAAGCCTCAAATAA 1337
> Ahg905172 jgi|Araly1|905172|Al_scaffold_0003_2300
Length=1164
Score = 957 bits (518), Expect = 0.0
Identities = 828/976 (85%), Gaps = 27/976 (3%)
Strand=Plus/Plus
Query 288 CTTTACGTCTGAAGCGGAAAAGCTTG-CGGGAAATCCTACAGTGACTGTGAAGGATTTGC 346
|||||| |||||| | |||| | || || | |||||||||| | |||| ||||| || |
Sbjct 204 CTTTACCTCTGAAAC--AAAA-CATGTCGAG-AATCCTACAGAGGCTGTCAAGGAATTAC 259
Query 347 ATGATAAAATGCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGT 406
||| |||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 260 ATGGTAAAATACTTGATTCTGTGAATGTCAAGAGATCAATGCCTCCAAATGCTTGGTTGT 319
Query 407 GG-CTGTTGATTGAGAACTGTCAGAATC-AGGATGATATTCA-TCTTCTCTTTGACGTTC 463
|| | |||||||||||||||| ||| | ||||||| || | | |||| ||||| ||||
Sbjct 320 GGTCA-TTGATTGAGAACTGTCGGAA-CGAGGATGACGTT-AGTTTTCTGTTTGATGTTC 376
Query 464 TTCAGAATCTACGGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCA 523
| |||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 377 TGCAGAATCTCCGGAGATTTAGATTGTCCAATCTTCGTATTCATGACAACTTTAATTGCA 436
Query 524 ATCTATGCCAACAAGTTGCTAAGACTTGTGTACGTGTTGGGG-CTATTGACTC-TGGAAA 581
|||||||||| |||||||||||||||||||||||||| ||| | ||| || | ||| ||
Sbjct 437 ATCTATGCCAGCAAGTTGCTAAGACTTGTGTACGTGT-GGGTACAATTAAC-CATGGTAA 494
Query 582 GAAGG-CT-TTGTGGAAACATAATGTTCACGGTTTGACTCCCAGTGTTGCATCTGCACAC 639
|||| || || |||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 495 -AAGGGCTCTT-TGGAAACATAATGTTCACGGGCTAACTCCCAGCGTTGCATCTGCACAC 552
Query 640 CATCTTA-TGTCATATGCACTAGAGCACAAGAATTCTGAA-CTCATGGAAGAAGTAATGC 697
||| ||| ||||||| ||| ||||||||||| | | ||| |||||||| |||||||||
Sbjct 553 CAT-TTACTGTCATACGCATTAGAGCACAAGGACGC-GAAACTCATGGATGAAGTAATGA 610
Query 698 AACTCCTGAAAACGAATGATCTGCCTCTACAACCCGGTACAGCAGATTTAGTTTTTAGGA 757
|||||||||||| |||| | |||||| ||||||| || ||||| ||||||||||| ||||
Sbjct 611 AACTCCTGAAAATGAATAACCTGCCTTTACAACCTGGGACAGCGGATTTAGTTTTCAGGA 670
Query 758 TCTGTCATGATACAGATAAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAG 817
||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| |||||
Sbjct 671 TCTGTCATGATACAGATAACTGGGATCTATTAGCTAAGTACTCGAAGAAATTCTGCAAAG 730
Query 818 CTGGAGTTAAGTTGAGGAAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAG 877
||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 731 CTGGAGTCAAGCTCAGGAAGACCACATTTGATGTCTGGATGGAATTTGCTGCCAAAAGAG 790
Query 878 GTGATACAGAGTCGCTATGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACA 937
| || ||||||||| ||||||| || ||||||| |||||| ||||| |||| ||||||||
Sbjct 791 GAGACACAGAGTCGTTATGGAATGTTGATAAACTGAGATCTGAGACTTACACTCAACACA 850
Query 938 CTCTTTCTACTGCCTTTTCTTGTGCAAAGGG-TTTCCTACTAGAA-AGTAAACCTGAAGA 995
| ||||| ||| ||||| ||||||||||| |||| | |||||| | |||||||||||
Sbjct 851 CCCTTTCCGGTGCTTTTTCATGTGCAAAGGGCTTTC-TGCTAGAACA-TAAACCTGAAGC 908
Query 996 AGCTGCTGCCGTCATCCAGATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCTGCAAT 1055
||||||||| || ||||| || ||||| || || |||||||||||||| ||||| ||| |
Sbjct 909 AGCTGCTGCTGTAATCCAAATCATCTGTCAGGCGTATCCTGATGAGAAGAAGTCAGCACT 968
Query 1056 TTCGACTGAATTTGAGAAACTTGTAAACGAGTGGCCTGTGGACGTTATCAAGCACCAAAC 1115
| | ||||||| |||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 969 TGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGCCTGTGGACATTATCAAGCACCAAAA 1028
Query 1116 CGACGAAGATAAGAAGGCTCTTGCTGCTTCATTGAAATCTGTGATTCCTTCAATGGTTAA 1175
|| ||||| ||||||||| | ||||| ||| ||||||||| || ||| ||||||| ||
Sbjct 1029 TGAAGAAGACAAGAAGGCTGTAGCTGCATCACTGAAATCTGACATCCCTGCAATGGTCAA 1088
Query 1176 TACATTGCTAAGCTCGGGTTTAAAAGTGAGCGTGGATCTGGATGAGTTAAACAAGAACGA 1235
| | ||| ||| ||||||||| | |||||| |||||| | ||||||||||| ||||| ||
Sbjct 1089 TGCTTTGGTAAACTCGGGTTTGAGAGTGAGAGTGGATTTAGATGAGTTAAAGAAGAATGA 1148
Query 1236 AGCTCTTCTCAGCTGA 1251
||||||||||| ||||
Sbjct 1149 AGCTCTTCTCATCTGA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5