BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15650.1 Length=863 Score E Sequences producing significant alignments: (Bits) Value Ahg329949 jgi|Araly1|329949|fgenesh1_pm.C_scaffold_7002176 760 0.0 > Ahg329949 jgi|Araly1|329949|fgenesh1_pm.C_scaffold_7002176 Length=702 Score = 760 bits (411), Expect = 0.0 Identities = 569/642 (89%), Gaps = 23/642 (4%) Strand=Plus/Plus Query 1 ATGGGTTGTGGAAAATCAAAACACGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTTGTGGAAAATCGAAACATGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60 Query 61 CCTTCGGAAGCTGAATCAGTGAAGGGAAAAGATAGCGAAGCAATTAAAAGACAAGAAAGC 120 ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| Sbjct 61 CCTTCGGAAGCTGAATCAGTGAAAGGAAAAGAGAGCGAAACAATTAAAAGACAAGAAAGC 120 Query 121 TGCCGGTGCCAGGAAACA-AACGACGTTTCCGCCGTAGTTCCCGGCGACCAGCCGGAGAC 179 |||||||||| ||||| | || ||| |||||| ||||||| |||| |||||||||||||| Sbjct 121 TGCCGGTGCC-GGAAAAAGAATGACATTTCCGACGTAGTTTCCGGTGACCAGCCGGAGAC 179 Query 180 -AACCGTAGAAAACAATAGCAAGAAACCGGAGGAAAAGGAAGATGGAGGAGATTGTAGTG 238 ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 CAAC-GTAGAAACCAATAGCAAGAAACCGGAGGAAAAGGAAGGTGGAGGAGATTGTAGTG 238 Query 239 AGGA-GATGGCGGTAGACAATG-CGAATGGTGACAAACAACCGGAGGAAAAAGAGACGGC 296 | | | |||||||||| | || |||||||||||||||||||||||||||| || || | Sbjct 239 AA-ACGGTGGCGGTAGAGA-TGACGAATGGTGACAAACAACCGGAGGAAAATGAAACAAC 296 Query 297 AGCCAGTTTTCCTCCGGTCACGGCGGTGGAGGC-GATAGTGCCGGAGAATATTGTGACGG 355 | | | |||||| ||||| ||| ||||| | | |||||||||||||||| ||||||||| Sbjct 297 AACAACTTTTCCGCCGGTGGCGGAGGTGGCG-CTGATAGTGCCGGAGAATGTTGTGACGG 355 Query 356 AGGAGACCGTCAACGACGT-AA--A--T-GAGAGTGTTTCGCCGGTTGAAGAACAAAAGG 409 |||||||||| |||||||| || | | ||||| |||||||||||||||| |||||||| Sbjct 356 AGGAGACCGTTAACGACGTGAATGAGATTGAGAGCGTTTCGCCGGTTGAAGGACAAAAGG 415 Query 410 AAAAAATTGATATTGATACGGTGGTAGAAGA-GA-AAA-GTGTAGAGGATGAAAAA-GAT 465 |||||||||||||||| |||||||||||||| || ||| || |||||||| ||||| ||| Sbjct 416 AAAAAATTGATATTGAAACGGTGGTAGAAGAAGAGAAAAGTATAGAGGAT-AAAAATGAT 474 Query 466 G-GTGATGTTGATACCGAAATTGCATCTTCTGAGGTTGAAGAACCAATACCGGAGGTACA 524 | | |||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 475 GAG-GATGTTGAAAGCGAAATTGCATCTTCTGAGGTTGAAGAACCTATACCTGAGGTACA 533 Query 525 TACTCCAGTAACAACGGAATTAGAAGCACAAGAAATTCCGACCACGGAAACTGACGAAAT 584 |||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| | Sbjct 534 AACTCTAGTAACAACAGAATTAGAAGTTCAAGAAATTCCGACCACGGAAAATGACGAATT 593 Query 585 CGCAGCCACGGAAAATGACGATATCGCAGCCACGGAAAATGA 626 ||||||||||||||||| |||||| |||||||||||||| Sbjct 594 TGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAATGA 635 Score = 161 bits (87), Expect = 6e-39 Identities = 102/109 (94%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 638 CCACGGAAAATGACG-ATATCGCAGCCACGGACAATGATGATATCACGGCCAGGGAAAAT 696 ||||||||||||||| || | ||||||||||| ||||||||||||| ||||| ||||||| Sbjct 575 CCACGGAAAATGACGAAT-TTGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAAT 633 Query 697 GATGAAATTCCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 745 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 634 GATGAAATTTCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 682 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31947004446 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5