BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15650.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329949 jgi|Araly1|329949|fgenesh1_pm.C_scaffold_7002176 760 0.0
> Ahg329949 jgi|Araly1|329949|fgenesh1_pm.C_scaffold_7002176
Length=702
Score = 760 bits (411), Expect = 0.0
Identities = 569/642 (89%), Gaps = 23/642 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGGAAAATCAAAACACGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTGGAAAATCGAAACATGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60
Query 61 CCTTCGGAAGCTGAATCAGTGAAGGGAAAAGATAGCGAAGCAATTAAAAGACAAGAAAGC 120
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 61 CCTTCGGAAGCTGAATCAGTGAAAGGAAAAGAGAGCGAAACAATTAAAAGACAAGAAAGC 120
Query 121 TGCCGGTGCCAGGAAACA-AACGACGTTTCCGCCGTAGTTCCCGGCGACCAGCCGGAGAC 179
|||||||||| ||||| | || ||| |||||| ||||||| |||| ||||||||||||||
Sbjct 121 TGCCGGTGCC-GGAAAAAGAATGACATTTCCGACGTAGTTTCCGGTGACCAGCCGGAGAC 179
Query 180 -AACCGTAGAAAACAATAGCAAGAAACCGGAGGAAAAGGAAGATGGAGGAGATTGTAGTG 238
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CAAC-GTAGAAACCAATAGCAAGAAACCGGAGGAAAAGGAAGGTGGAGGAGATTGTAGTG 238
Query 239 AGGA-GATGGCGGTAGACAATG-CGAATGGTGACAAACAACCGGAGGAAAAAGAGACGGC 296
| | | |||||||||| | || |||||||||||||||||||||||||||| || || |
Sbjct 239 AA-ACGGTGGCGGTAGAGA-TGACGAATGGTGACAAACAACCGGAGGAAAATGAAACAAC 296
Query 297 AGCCAGTTTTCCTCCGGTCACGGCGGTGGAGGC-GATAGTGCCGGAGAATATTGTGACGG 355
| | | |||||| ||||| ||| ||||| | | |||||||||||||||| |||||||||
Sbjct 297 AACAACTTTTCCGCCGGTGGCGGAGGTGGCG-CTGATAGTGCCGGAGAATGTTGTGACGG 355
Query 356 AGGAGACCGTCAACGACGT-AA--A--T-GAGAGTGTTTCGCCGGTTGAAGAACAAAAGG 409
|||||||||| |||||||| || | | ||||| |||||||||||||||| ||||||||
Sbjct 356 AGGAGACCGTTAACGACGTGAATGAGATTGAGAGCGTTTCGCCGGTTGAAGGACAAAAGG 415
Query 410 AAAAAATTGATATTGATACGGTGGTAGAAGA-GA-AAA-GTGTAGAGGATGAAAAA-GAT 465
|||||||||||||||| |||||||||||||| || ||| || |||||||| ||||| |||
Sbjct 416 AAAAAATTGATATTGAAACGGTGGTAGAAGAAGAGAAAAGTATAGAGGAT-AAAAATGAT 474
Query 466 G-GTGATGTTGATACCGAAATTGCATCTTCTGAGGTTGAAGAACCAATACCGGAGGTACA 524
| | |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 475 GAG-GATGTTGAAAGCGAAATTGCATCTTCTGAGGTTGAAGAACCTATACCTGAGGTACA 533
Query 525 TACTCCAGTAACAACGGAATTAGAAGCACAAGAAATTCCGACCACGGAAACTGACGAAAT 584
|||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 534 AACTCTAGTAACAACAGAATTAGAAGTTCAAGAAATTCCGACCACGGAAAATGACGAATT 593
Query 585 CGCAGCCACGGAAAATGACGATATCGCAGCCACGGAAAATGA 626
||||||||||||||||| |||||| ||||||||||||||
Sbjct 594 TGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAATGA 635
Score = 161 bits (87), Expect = 6e-39
Identities = 102/109 (94%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 638 CCACGGAAAATGACG-ATATCGCAGCCACGGACAATGATGATATCACGGCCAGGGAAAAT 696
||||||||||||||| || | ||||||||||| ||||||||||||| ||||| |||||||
Sbjct 575 CCACGGAAAATGACGAAT-TTGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAAT 633
Query 697 GATGAAATTCCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 745
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 634 GATGAAATTTCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5