BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15660.1
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 564 2e-160
Ahg946744 jgi|Araly1|946744|scaffold_702973.1 518 2e-146
Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 462 9e-130
Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 453 5e-127
Ahg946741 jgi|Araly1|946741|scaffold_702970.1 390 4e-108
> Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1
Length=580
Score = 564 bits (305), Expect = 2e-160
Identities = 379/414 (92%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 89 CGCTTTTCAAACAAC-CTATT-ACATTATAACACCAATGGAGAAGATACAAAAGATGATC 146
|||||||||||| || || || | ||||||||| ||||||||||| |||| |||||||||
Sbjct 24 CGCTTTTCAAAC-ACACT-TTCAAATTATAACAACAATGGAGAAGCTACAGAAGATGATC 81
Query 147 TCCGAGAAGTCGGTAGTAATATTTAGCAATAACTCTTGTTGCATGTCACACACAATCAAG 206
|| |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||
Sbjct 82 TCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGCTGCATGTCGCACACAATCAAG 141
Query 207 ACTCTCTTCTTAGACCTTGGCGTGAACCCGACAATCTATGAGCTAGACGAGATCAACAGA 266
||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 142 ACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTATGAACTAGACGAGATCAACAGG 201
Query 267 GGAAAAGAGATAGAGTATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTG 326
||||||||||||||| | ||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 202 GGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGTAGCCCGACCGTGCCAGTGGTG 261
Query 327 TTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGT 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 262 TTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGT 321
Query 387 TCTCTCATTCCAATGCTTAAACGCTTTGGGGCTTTATGGCTTTGA-TAAAATATAAAAGA 445
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||
Sbjct 322 TCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTTATGGCTTTGACTAAA-TATAAAGGA 380
Query 446 ATAGTTACTTATTGA-TCGTAGCTTGGTAATAATGATGTCATGAAACCAATCAA 498
||| ||||||||||| | |||||||||||||||| |||||||||||| ||||||
Sbjct 381 ATACTTACTTATTGACT-GTAGCTTGGTAATAATAATGTCATGAAACTAATCAA 433
> Ahg946744 jgi|Araly1|946744|scaffold_702973.1
Length=350
Score = 518 bits (280), Expect = 2e-146
Identities = 326/348 (94%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 103 CCTATTACATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAG 162
||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2 CCTTTTACATTATAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAG 61
Query 163 TAATATTTAGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACC 222
| || |||||||| || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 62 TGATCTTTAGCAAGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACC 121
Query 223 TTGGCGTGAACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGT 282
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 122 TTGGCGTGAACCCGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGC 181
Query 283 ATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGC 342
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 182 ATGCATTAGCTCAGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGC 241
Query 343 TTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGC 402
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 242 TTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGC 301
Query 403 TTAAACGCTTTGGGGCTTTATGGCTTTGATAAAATAT-A-AAAG-AAT 447
|||||||| ||||||||||||||||||||| |||||| | |||| |||
Sbjct 302 TTAAACGCGTTGGGGCTTTATGGCTTTGATTAAATATTATAAAGGAAT 349
> Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1
Length=589
Score = 462 bits (250), Expect = 9e-130
Identities = 351/400 (88%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 109 ACATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAGTAATAT 168
|||||||||||| |||||| ||| |||| |||||||||||||||||||||||||| || |
Sbjct 98 ACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCT 157
Query 169 TTAGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACCTTGGCG 228
||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |||| |
Sbjct 158 TTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTG 217
Query 229 TGAACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGTATGCAT 288
||||||| || |||||||||||||| ||||| ||||||||||| ||||||||| | ||||
Sbjct 218 TGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCAT 277
Query 289 TGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTG 348
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 278 TGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTG 337
Query 349 GTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAAC 408
|||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |
Sbjct 338 GTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGC 397
Query 409 GCTTTGGGGCTTTATGGCTTTGATA--AAATATAAAAGAATAG-TTACTTATTGATCGTA 465
|| |||| || |||||||||||| ||| ||||| |||| | |||| || || ||||
Sbjct 398 GCGTTGGAGCACTATGGCTTTGATTTCAAA-ATAAAGGAAT-GCTTACGTAAAGAACGTA 455
Query 466 GCTTGGTAATAATGATGTCATGAAACCAATCAAGGATGAC 505
|| || ||||||| |||| ||| || |||||| ||||||
Sbjct 456 GCATGATAATAATAATGTAATGGAAGTAATCAAAGATGAC 495
> Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1
Length=487
Score = 453 bits (245), Expect = 5e-127
Identities = 359/415 (87%), Gaps = 3/415 (1%)
Strand=Plus/Plus
Query 18 TCTAATTTTCCAATCTTTCATTTCTGATTTTGCAT-TGTAATCGAACATACCCACTAATA 76
|||| |||||| || ||| || ||| || | |||| | | | | |||| ||| | | ||
Sbjct 50 TCTAGTTTTCCCAT-TTTGATCTCTAATCTAGCATCT-TGACCAAACACACCTATTTTTA 107
Query 77 TCCTTTGCAAGCCGCTTTTCAAACAACCTATTACATTATAACACCAATGGAGAAGATACA 136
|||||||||| || |||||||| | ||||| || ||||||||| ||||||||| ||||
Sbjct 108 TCCTTTGCAATACGGTTTTCAAATATCCTATCACGTTATAACACTAATGGAGAATCTACA 167
Query 137 AAAGATGATCTCCGAGAAGTCGGTAGTAATATTTAGCAATAACTCTTGTTGCATGTCACA 196
||||||||| |||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct 168 AAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCAAGAACTCTTGTTGCATGTCTCA 227
Query 197 CACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACAATCTATGAGCTAGACGA 256
||||||||||||||||||||||||| ||||| |||||||||| || ||||| || || ||
Sbjct 228 CACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACCCGACGATATATGAACTCGATGA 287
Query 257 GATCAACAGAGGAAAAGAGATAGAGTATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGT 316
||| ||||||||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 288 GATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACCGT 347
Query 317 GCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCA 407
Query 377 TCTCAACCGTTCTCTCATTCCAATGCTTAAACGCTTTGGGGCTTTATGGCTTTGA 431
||| || |||||||| ||||||||||||| ||| ||| || ||||||||||||
Sbjct 408 TCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTGGAGCATTATGGCTTTGA 462
> Ahg946741 jgi|Araly1|946741|scaffold_702970.1
Length=353
Score = 390 bits (211), Expect = 4e-108
Identities = 284/320 (89%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 111 ATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAGTAATATTT 170
|||| |||| |||||||||| |||||||||||||| | |||||||| |||||||| |||
Sbjct 12 ATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTT 71
Query 171 AGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACCTTGGCGTG 230
||||| ||||| || || ||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 72 AGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTG 131
Query 231 AACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGTATGCATTG 290
||||| || ||||||||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 132 AACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTG 191
Query 291 GCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGT 350
|||||||| || ||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 192 GCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGT 251
Query 351 GGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGC 410
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 252 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAACG- 310
Query 411 TT-TGGGGCTTTATGGCTTT 429
| ||| || ||||||||||
Sbjct 311 TGCTGGAGCATTATGGCTTT 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18352838309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5