BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15670.1
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 830 0.0
Ahg946744 jgi|Araly1|946744|scaffold_702973.1 468 2e-131
Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 442 1e-123
Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 394 4e-109
Ahg946741 jgi|Araly1|946741|scaffold_702970.1 375 1e-103
> Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1
Length=580
Score = 830 bits (449), Expect = 0.0
Identities = 542/586 (92%), Gaps = 10/586 (2%)
Strand=Plus/Plus
Query 4 AACCTATTTCATCCTCCTCAAGTCACTTTTCAAACACACTTTCAAA-T-TAACAAAAATG 61
||||||||||||||||||| |||| ||||||||||||||||||||| | |||||| ||||
Sbjct 1 AACCTATTTCATCCTCCTCGAGTCGCTTTTCAAACACACTTTCAAATTATAACAACAATG 60
Query 62 GAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCAAAAACTCATGC 121
||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||
Sbjct 61 GAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGC 120
Query 122 TGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATCCGACGATTTAT 181
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 121 TGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTAT 180
Query 182 GAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTCAGCTTGGCTGC 241
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGT 240
Query 242 AGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAGCCAATCAAGTC 301
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTC 300
Query 302 ATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCGTTATGG 361
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 301 ATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTTATGG 360
Query 362 CTTTGACAAAATATAAAGAAATAGTTACTTATTGATTGTAGATTGGTAATAATAATGT-A 420
||||||| |||||||||| |||| ||||||||||| ||||| |||||||||||||||| |
Sbjct 361 CTTTGACTAAATATAAAGGAATACTTACTTATTGACTGTAGCTTGGTAATAATAATGTCA 420
Query 421 TTGAAACCAATCATATACATATGAATGTTTTGTGTCTATCTAAGTTTTGAAAGGATAGAT 480
|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 -TGAAACTAATCAAATACGTATGAATGTTTTGTGTCTATCTAAGTTTTGAAAGGATAGAT 479
Query 481 TATGAGGCAGGGTACTGATTTC-GTAACGTTCTTGGTATACTTAGTGTTGTATTTCTATT 539
|||| || | ||| | |||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 480 TATGTGG--G--TACCG-TTTCCGTAACGTGCTTGGTATACTTAGTGGTGTATTTCTATT 534
Query 540 TTCAGTTTTTATGAATACAAACATGCATTTAAGAAAAGTGTATGCC 585
|||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 535 TTCAGTTTTTATAAATACATACATGCATTTAAGAAAAGTGTATGCC 580
> Ahg946744 jgi|Araly1|946744|scaffold_702973.1
Length=350
Score = 468 bits (253), Expect = 2e-131
Identities = 309/336 (92%), Gaps = 3/336 (1%)
Strand=Plus/Plus
Query 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
||||| ||||||||||||||| ||||||| ||| ||||||||| ||||||| |||||||
Sbjct 14 TAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCA 73
Query 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
| || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 74 AGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACC 133
Query 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
||||||| |||||| |||| ||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 134 CGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTC 193
Query 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 194 AGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 253
Query 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 254 CCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTG 313
Query 351 GGGCGTTATGGCTTTGAC-AAA-AT-ATAAAGAAAT 383
|||| |||||||||||| ||| || |||||| |||
Sbjct 314 GGGCTTTATGGCTTTGATTAAATATTATAAAGGAAT 349
> Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1
Length=589
Score = 442 bits (239), Expect = 1e-123
Identities = 340/388 (88%), Gaps = 9/388 (2%)
Strand=Plus/Plus
Query 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
||||| ||||||| |||||||||||||||| ||| ||||||||| ||||||| |||||||
Sbjct 104 TAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCA 163
Query 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
|||||||||| |||||||| ||||||||||||||||||||| ||||| |||| || || |
Sbjct 164 AAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTGTGAACC 223
Query 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
| || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 224 CAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTC 283
Query 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 284 AGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 343
Query 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
|||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||||
Sbjct 344 CCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGCGCGTTG 403
Query 351 GGGCGTTATGGCTTTGA---CAAAATATAAAGAAATAG-TTACTTATTGATTGTAG-ATT 405
| || ||||||||||| ||||||| || ||| | | |||| || || |||| ||
Sbjct 404 GAGCACTATGGCTTTGATTTCAAAATA-AAGGAA-T-GCTTACGTAAAGAACGTAGCAT- 459
Query 406 GGTAATAATAATGTATTGAAACCAATCA 433
| ||||||||||||| || || |||||
Sbjct 460 GATAATAATAATGTAATGGAAGTAATCA 487
> Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1
Length=487
Score = 394 bits (213), Expect = 4e-109
Identities = 283/318 (89%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
||||| ||||||||| ||||| ||||||| || ||||| ||| ||||||| |||||||
Sbjct 146 TAACACTAATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCA 205
Query 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
| ||||| || |||||||| ||||||||||||||||||||||||||| ||||| | || |
Sbjct 206 AGAACTCTTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACC 265
Query 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
||||||| ||||| || |||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 266 CGACGATATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTC 325
Query 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 326 AGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 385
Query 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
||||||||||||||||||||||||| || |||||||| ||||||||||||| |||| ||
Sbjct 386 CCAATCAAGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTG 445
Query 351 GGGCGTTATGGCTTTGAC 368
| || |||||||||||||
Sbjct 446 GAGCATTATGGCTTTGAC 463
> Ahg946741 jgi|Araly1|946741|scaffold_702970.1
Length=353
Score = 375 bits (203), Expect = 1e-103
Identities = 286/326 (88%), Gaps = 5/326 (2%)
Strand=Plus/Plus
Query 44 TTC-AAATT--AACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTC-GTTAGT 99
||| ||||| ||||| ||||||||| ||||| ||||||| | | |||||||| | ||||
Sbjct 6 TTCAAAATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAG-TAGT 64
Query 100 GATATTTAGCAAAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCT 159
|| |||||||| ||||| ||||| ||||| |||||||||||||||||||| |||||| |
Sbjct 65 AATTTTTAGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTT 124
Query 160 TGGCGTAAATCCGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCA 219
|||||| || || ||||| |||||||| || |||||||||||||||| |||||||||||
Sbjct 125 TGGCGTGAACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCA 184
Query 220 AGCATTGGCTCAGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCT 279
||||||||||||||| || |||||||||||||| || ||||||||||| |||||||||||
Sbjct 185 AGCATTGGCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCT 244
Query 280 TGTCGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCT 339
||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 245 TGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCT 304
Query 340 TAAACGCGTTGGGGCGTTATGGCTTT 365
|||||| | ||| || ||||||||||
Sbjct 305 TAAACGTGCTGGAGCATTATGGCTTT 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21481596607
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5