BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15680.1
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 743 0.0
Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 496 1e-139
Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 416 9e-116
Ahg946744 jgi|Araly1|946744|scaffold_702973.1 403 7e-112
Ahg946741 jgi|Araly1|946741|scaffold_702970.1 392 2e-108
Ahg946739 jgi|Araly1|946739|scaffold_702968.1 344 4e-94
> Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1
Length=589
Score = 743 bits (402), Expect = 0.0
Identities = 470/502 (94%), Gaps = 7/502 (1%)
Strand=Plus/Plus
Query 144 TTTCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 203
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 TTTCACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 153
Query 204 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTT 263
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 154 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTT 213
Query 264 GGCGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAA 323
|| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 214 GGTGTGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAA 273
Query 324 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTT 383
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 274 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTT 333
Query 384 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTA 443
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 334 GTTGGTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTT 393
Query 444 AAGAGGGTTGGAGCACTATGGCTTTGATTTCAAGATAAGGGGATATTTACGTTATGAACG 503
||| | ||||||||||||||||||||||||||| |||| || || |||||| | |||||
Sbjct 394 AAGCGCGTTGGAGCACTATGGCTTTGATTTCAAAATAAAGGAATGCTTACGTAAAGAACG 453
Query 504 TAGCATGGTAATAATAATGTAATGAAAGTAATCAAAGATGACAAACAAAAACACATATAC 563
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 454 TAGCATGATAATAATAATGTAATGGAAGTAATCAAAGATGACAAACAAAAACACATATAC 513
Query 564 ATGTATGTTGTCTATCTAAGTTTTGGAA-GGATAGACTATGACTATAGGATACCTATTTT 622
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 514 ATGTATGTTGTCTATCTAAGTTTTG-AATGGATAGACTATGA-----GGATACCTATTTT 567
Query 623 GTAACGTGTGGGTAAACTTTAT 644
||||||||||||||||||||||
Sbjct 568 GTAACGTGTGGGTAAACTTTAT 589
Score = 148 bits (80), Expect = 4e-35
Identities = 89/93 (96%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 1 ATCAAAAACAAACTCTAAGTCATCTCTTATATATCGTCAGCC-AAAGACTTCAAGTTCTC 59
||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1 ATCAAAAACAAACTCAAAGTCATCTCTTATATATCTTCAGCCAAAAGACTTCAAGTTCTC 60
Query 60 TAGCTTACCAATTTCACCCCTTTTCTCTCATTT 92
||||||||||||||||||||| |||||||||||
Sbjct 61 TAGCTTACCAATTTCACCCCTCTTCTCTCATTT 93
> Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1
Length=580
Score = 496 bits (268), Expect = 1e-139
Identities = 382/437 (87%), Gaps = 8/437 (2%)
Strand=Plus/Plus
Query 107 ACCCATTTCATCCTCGGCGAGTCGCTCTTCGAACACA-TTTCACATTATAATACCAATGG 165
||| ||||||||||| ||||||||| ||| |||||| ||||| ||||||| | ||||||
Sbjct 2 ACCTATTTCATCCTCCTCGAGTCGCTTTTCAAACACACTTTCAAATTATAACAACAATGG 61
Query 166 ATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAAAACTCATGTT 225
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 62 AGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGCT 121
Query 226 GCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTGAATCCAACGATCTATG 285
||||||| ||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 122 GCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTATG 181
Query 286 AGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAGCTTGGCTGCA 345
| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 182 AACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGTA 241
Query 346 GCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCA 405
|||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 242 GCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCA 301
Query 406 TGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGG-GTTGGAGCACTATGG 464
||||||||||||||||||| ||||| |||| ||||| || | | | ||| || |||||
Sbjct 302 TGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAA-ACGCGCTGGGGCTTTATGG 360
Query 465 CTTTGATTTCAAGATAAGGGGATATTTACGTTAT-GAAC-GTAGCATGGTAATAATAATG 522
|||||| | || |||| || ||| |||| |||| || | ||||| ||||||||||||||
Sbjct 361 CTTTGACTA-AATATAAAGGAATACTTAC-TTATTGA-CTGTAGCTTGGTAATAATAATG 417
Query 523 TAATGAAAGTAATCAAA 539
| |||||| ||||||||
Sbjct 418 TCATGAAACTAATCAAA 434
> Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1
Length=487
Score = 416 bits (225), Expect = 9e-116
Identities = 304/343 (89%), Gaps = 1/343 (0%)
Strand=Plus/Plus
Query 146 TCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGAT 205
|||| |||||| || |||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 138 TCACGTTATAACACTAATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGAT 197
Query 206 CTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGG 265
||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 198 CTTTAGCAAGAACTCTTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGG 257
Query 266 CGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGC 325
| |||| || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 258 CATGAACCCGACGATATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGC 317
Query 326 ATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGT 385
|||||||||||| || |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 318 ATTGGCTCAGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 377
Query 386 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAA 445
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 378 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAA 437
Query 446 GAGGGTTGGAGCACTATGGCTTTGATTTCAAGATAAG-GGGAT 487
| | | ||||||| ||||||||||| ||||| |||| |||||
Sbjct 438 GCGCGCTGGAGCATTATGGCTTTGACTTCAAAATAAATGGGAT 480
> Ahg946744 jgi|Araly1|946744|scaffold_702973.1
Length=350
Score = 403 bits (218), Expect = 7e-112
Identities = 293/330 (89%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 144 TTTCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 203
||| ||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 4 TTTTACATTATAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTG 63
Query 204 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTT 263
||||||||||| || || || |||||||| ||||| ||||||||||||||| ||||| ||
Sbjct 64 ATCTTTAGCAAGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTT 123
Query 264 GGCGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAA 323
|||||||| || |||||||||||| |||| ||||||||||||||||| ||| |||||||
Sbjct 124 GGCGTGAACCCGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCAT 183
Query 324 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTT 383
||||| |||||||||||||| ||||| |||||||| |||||||| || ||||||||||||
Sbjct 184 GCATTAGCTCAGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTT 243
Query 384 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTA 443
||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 244 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTT 303
Query 444 AAGAGG-GTTGGAGCACTATGGCTTTGATT 472
|| | | ||||| || |||||||||||||
Sbjct 304 AA-ACGCGTTGGGGCTTTATGGCTTTGATT 332
> Ahg946741 jgi|Araly1|946741|scaffold_702970.1
Length=353
Score = 392 bits (212), Expect = 2e-108
Identities = 293/333 (88%), Gaps = 2/333 (1%)
Strand=Plus/Plus
Query 150 ATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTT 209
|||| || | ||||||| || ||||| ||||||||| | |||||||| ||||| || |||
Sbjct 12 ATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTT 71
Query 210 AGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTG 269
||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 72 AGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTG 131
Query 270 AATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTG 329
|| || |||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 132 AACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTG 191
Query 330 GCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGT 389
|||||||| || |||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 192 GCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGT 251
Query 390 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGG 449
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |
Sbjct 252 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA-ACG 310
Query 450 -GTTGGAGCACTATGGCTTTGATTTCAAGATAA 481
| ||||||| ||||||||| | ||||| ||||
Sbjct 311 TGCTGGAGCATTATGGCTTTAACTTCAAAATAA 343
> Ahg946739 jgi|Araly1|946739|scaffold_702968.1
Length=350
Score = 344 bits (186), Expect = 4e-94
Identities = 274/317 (86%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 158 ACCAATGGATAAGCTACAGAA-GATGATCTCCGAGAAGTCGGTAGTGATCTTT-AGCAAA 215
||||||||| |||||||| || |||| ||| ||||||| | || ||||| ||| || ||
Sbjct 18 ACCAATGGAGAAGCTACA-AACGATGGTCTACGAGAAGCCTGTGGTGAT-TTTCAGTAAG 75
Query 216 AACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTGAATCCA 275
|| || || |||||||||||||| ||||||||||||||| | |||||||| ||||| |||
Sbjct 76 AATTCGTGCTGCATGTCTCACACAATCAAGACTCTCTTCCTTGACTTTGGTGTGAACCCA 135
Query 276 ACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAG 335
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACGATTTATGAGCTCGACGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAA 195
Query 336 CTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGTGGAGCC 395
|| ||||||||||| ||||| || |||||||| || ||||||||||| || |||||||||
Sbjct 196 CTCGGCTGCAGCCCGACCGTACCAGTGGTGTTCATAGGAGGGCAGCTCGTAGGTGGAGCC 255
Query 396 AATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGGGTTGGA 455
|||||||||||||| |||||||||||||| ||||| || || ||||| ||| | ||||||
Sbjct 256 AATCAAGTCATGAGCCTCCATCTCAATCGTTCTCTCGTCCCAATGCTTAAGCGCGTTGGA 315
Query 456 GCACTATGGCTTTGATT 472
|| ||||| |||||||
Sbjct 316 GCGTTATGGGTTTGATT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23598085623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5