BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15690.1 Length=598 Score E Sequences producing significant alignments: (Bits) Value Ahg946741 jgi|Araly1|946741|scaffold_702970.1 520 6e-147 Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 425 1e-118 Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 401 2e-111 Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 392 1e-108 Ahg946744 jgi|Araly1|946744|scaffold_702973.1 372 2e-102 > Ahg946741 jgi|Araly1|946741|scaffold_702970.1 Length=353 Score = 520 bits (281), Expect = 6e-147 Identities = 320/339 (94%), Gaps = 1/339 (0%) Strand=Plus/Plus Query 105 AAAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAAT 164 |||| |||||| |||||||||||||||||| ||||||||| |||||||||| |||||||| Sbjct 9 AAAA-TTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAAT 67 Query 165 TTTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGG 224 ||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 68 TTTTAGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGG 127 Query 225 CGTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGC 284 ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 128 CGTGAACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGC 187 Query 285 ATTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGT 344 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 188 ATTGGCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGT 247 Query 345 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAA 404 |||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct 248 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 307 Query 405 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 443 ||||||||||||||||||||||||||||||||||||||| Sbjct 308 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 346 > Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 Length=487 Score = 425 bits (230), Expect = 1e-118 Identities = 300/335 (90%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179 ||||||||| ||||| |||||||| || ||||| |||||||| || |||||||||||||| Sbjct 153 AATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCAAGAACTC 212 Query 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239 || ||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || Sbjct 213 TTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACCCGACGAT 272 Query 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299 ||||| ||||| ||||| |||| ||||| |||||||||||| ||||||||||||||||| Sbjct 273 ATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 332 Query 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359 |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 333 GTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 392 Query 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419 |||||||||||||||||| || || || |||||||| |||||||| || ||||||||||| Sbjct 393 AGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTGGAGCATT 452 Query 420 ATGGCTTTAACTTCAAAATAAATGTAATTTCAAAT 454 |||||||| ||||||||||||||| ||| ||||| Sbjct 453 ATGGCTTTGACTTCAAAATAAATGGGATTGCAAAT 487 > Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 Length=589 Score = 401 bits (217), Expect = 2e-111 Identities = 287/322 (89%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179 |||||| || ||||||||||||||||| |||||||||||||| || |||||||| ||||| Sbjct 111 AATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAAAACTC 170 Query 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239 ||| ||||||||||| ||||| |||||||||||| |||||||||| |||||||| || || Sbjct 171 ATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTGTGAACCCAACCAT 230 Query 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299 ||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||| || Sbjct 231 CTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAGCTTGG 290 Query 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359 |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 291 CTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 350 Query 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419 ||||||||| ||||||||||| ||||| || ||||| |||||||| || | ||||||| | Sbjct 351 AGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGCGCGTTGGAGCACT 410 Query 420 ATGGCTTTAACTTCAAAATAAA 441 |||||||| | ||||||||||| Sbjct 411 ATGGCTTTGATTTCAAAATAAA 432 > Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 Length=580 Score = 392 bits (212), Expect = 1e-108 Identities = 296/337 (88%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 106 AAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATT 165 ||| ||| || |||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 44 AAA-TTATAACAACAATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATC 102 Query 166 TTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGC 225 |||||||| ||||| ||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct 103 TTTAGCAAAAACTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGC 162 Query 226 GTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCA 285 ||||| ||||| |||||||| || ||||||||||||| |||| ||||||||||||||| Sbjct 163 GTGAATCCGACGATCTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCA 222 Query 286 TTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTT 345 |||||||| || || || ||||||||||| || ||||||||||| ||||||||||||||| Sbjct 223 TTGGCTCAACTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTT 282 Query 346 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAA 405 ||||||||||||||||||||||||||||||||||| || || || |||| ||||||||| Sbjct 283 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAA 342 Query 406 CGTGCTGGAGCATTATGGCTTTAACTTCAAA-ATAAA 441 || ||||| || |||||||||| ||| ||| ||||| Sbjct 343 CGCGCTGGGGCTTTATGGCTTTGACT--AAATATAAA 377 > Ahg946744 jgi|Araly1|946744|scaffold_702973.1 Length=350 Score = 372 bits (201), Expect = 2e-102 Identities = 273/309 (88%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 119 CAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACT 178 |||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| | Sbjct 20 CAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATT 79 Query 179 CATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTA 238 | ||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| | Sbjct 80 CTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGA 139 Query 239 TCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCG 298 |||||||| | ||||||||||||| ||||| ||| ||||||| ||||| |||||||| | Sbjct 140 TCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTG 199 Query 299 GATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATC 358 | || ||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 200 GCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATC 259 Query 359 AAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCAT 418 |||||||||||||||||||||| || || || |||| ||||||||||| | ||| || | Sbjct 260 AAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTT 319 Query 419 TATGGCTTT 427 ||||||||| Sbjct 320 TATGGCTTT 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21901308086 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5