BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15690.1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946741 jgi|Araly1|946741|scaffold_702970.1 520 6e-147
Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 425 1e-118
Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 401 2e-111
Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 392 1e-108
Ahg946744 jgi|Araly1|946744|scaffold_702973.1 372 2e-102
> Ahg946741 jgi|Araly1|946741|scaffold_702970.1
Length=353
Score = 520 bits (281), Expect = 6e-147
Identities = 320/339 (94%), Gaps = 1/339 (0%)
Strand=Plus/Plus
Query 105 AAAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAAT 164
|||| |||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 9 AAAA-TTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAAT 67
Query 165 TTTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGG 224
||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 68 TTTTAGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGG 127
Query 225 CGTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGC 284
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 128 CGTGAACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGC 187
Query 285 ATTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGT 344
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 ATTGGCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGT 247
Query 345 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAA 404
|||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 248 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 307
Query 405 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 443
|||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 346
> Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1
Length=487
Score = 425 bits (230), Expect = 1e-118
Identities = 300/335 (90%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179
||||||||| ||||| |||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 153 AATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCAAGAACTC 212
Query 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239
|| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 213 TTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACCCGACGAT 272
Query 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299
||||| ||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||
Sbjct 273 ATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 332
Query 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 333 GTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 392
Query 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419
|||||||||||||||||| || || || |||||||| |||||||| || |||||||||||
Sbjct 393 AGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTGGAGCATT 452
Query 420 ATGGCTTTAACTTCAAAATAAATGTAATTTCAAAT 454
|||||||| ||||||||||||||| ||| |||||
Sbjct 453 ATGGCTTTGACTTCAAAATAAATGGGATTGCAAAT 487
> Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1
Length=589
Score = 401 bits (217), Expect = 2e-111
Identities = 287/322 (89%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179
|||||| || ||||||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 111 AATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAAAACTC 170
Query 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239
||| ||||||||||| ||||| |||||||||||| |||||||||| |||||||| || ||
Sbjct 171 ATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTGTGAACCCAACCAT 230
Query 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299
||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 231 CTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAGCTTGG 290
Query 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359
|||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 291 CTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 350
Query 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419
||||||||| ||||||||||| ||||| || ||||| |||||||| || | ||||||| |
Sbjct 351 AGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGCGCGTTGGAGCACT 410
Query 420 ATGGCTTTAACTTCAAAATAAA 441
|||||||| | |||||||||||
Sbjct 411 ATGGCTTTGATTTCAAAATAAA 432
> Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1
Length=580
Score = 392 bits (212), Expect = 1e-108
Identities = 296/337 (88%), Gaps = 4/337 (1%)
Strand=Plus/Plus
Query 106 AAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATT 165
||| ||| || |||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 44 AAA-TTATAACAACAATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATC 102
Query 166 TTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGC 225
|||||||| ||||| ||||||||||| || ||||| |||||||||||||||||| |||||
Sbjct 103 TTTAGCAAAAACTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGC 162
Query 226 GTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCA 285
||||| ||||| |||||||| || ||||||||||||| |||| |||||||||||||||
Sbjct 163 GTGAATCCGACGATCTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCA 222
Query 286 TTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTT 345
|||||||| || || || ||||||||||| || ||||||||||| |||||||||||||||
Sbjct 223 TTGGCTCAACTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTT 282
Query 346 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAA 405
||||||||||||||||||||||||||||||||||| || || || |||| |||||||||
Sbjct 283 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAA 342
Query 406 CGTGCTGGAGCATTATGGCTTTAACTTCAAA-ATAAA 441
|| ||||| || |||||||||| ||| ||| |||||
Sbjct 343 CGCGCTGGGGCTTTATGGCTTTGACT--AAATATAAA 377
> Ahg946744 jgi|Araly1|946744|scaffold_702973.1
Length=350
Score = 372 bits (201), Expect = 2e-102
Identities = 273/309 (88%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 119 CAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACT 178
|||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |
Sbjct 20 CAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATT 79
Query 179 CATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTA 238
| ||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 80 CTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGA 139
Query 239 TCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCG 298
|||||||| | ||||||||||||| ||||| ||| ||||||| ||||| |||||||| |
Sbjct 140 TCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTG 199
Query 299 GATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATC 358
| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 200 GCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATC 259
Query 359 AAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCAT 418
|||||||||||||||||||||| || || || |||| ||||||||||| | ||| || |
Sbjct 260 AAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTT 319
Query 419 TATGGCTTT 427
|||||||||
Sbjct 320 TATGGCTTT 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21901308086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5