BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15700.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1 749 0.0
Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1 449 7e-126
Ahg946741 jgi|Araly1|946741|scaffold_702970.1 448 2e-125
Ahg946744 jgi|Araly1|946744|scaffold_702973.1 440 4e-123
Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1 433 7e-121
Ahg946739 jgi|Araly1|946739|scaffold_702968.1 363 9e-100
> Ahg493317 jgi|Araly1|493317|fgenesh2_kg.7__2750__AT4G15700.1
Length=487
Score = 749 bits (405), Expect = 0.0
Identities = 460/487 (94%), Gaps = 1/487 (0%)
Strand=Plus/Plus
Query 1 GTCACTTCTCATTTTCACCCAAATATATCAATAATCTCTCTATAAGTTATCTAGTTTTCC 60
|||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1 GTCACTTCTCATCTTCACCCAAAGATATCATTAATCTCTTTATAAGTTATCTAGTTTTCC 60
Query 61 CATATTCATCTCTAATCTAGCATTTTGACCAAACACACCTATTTTTCTCCTTTGCAAGAC 120
||| || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 61 CATTTTGATCTCTAATCTAGCATCTTGACCAAACACACCTATTTTTATCCTTTGCAATAC 120
Query 121 AGTTTTCAAATAT-CTATCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCC 179
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 121 GGTTTTCAAATATCCTATCACGTTATAACACTAATGGAGAATCTACAAAAGATGATATCC 180
Query 180 GAGAAGTCGGTAGTGATCTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACT 239
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAGAAATCGGTAGTGATCTTTAGCAAGAACTCTTGTTGCATGTCTCACACAATCAAGACT 240
Query 240 CTCTTCTTAGACCTTGGCGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGA 299
|||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||
Sbjct 241 CTCTTCTTAGACTTTGGCATGAACCCGACGATATATGAACTCGATGAGATTAACAGAGGA 300
Query 300 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTC 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTC 360
Query 360 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCC 419
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 361 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTGAATCGTTCT 420
Query 420 CTTGTTCCAATGCTTAAGCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 421 CTTGTTCCAATGCTTAAGCGCGCTGGAGCATTATGGCTTTGACTTCAAAATAAATGGGAT 480
Query 480 TGCAAAT 486
|||||||
Sbjct 481 TGCAAAT 487
> Ahg493318 jgi|Araly1|493318|fgenesh2_kg.7__2751__AT4G15680.1
Length=589
Score = 449 bits (243), Expect = 7e-126
Identities = 310/343 (90%), Gaps = 1/343 (0%)
Strand=Plus/Plus
Query 137 TCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGAT 196
|||| ||||| || |||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 96 TCACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGAT 155
Query 197 CTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGG 256
||||||||| ||||| || |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 156 CTTTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGG 215
Query 257 CGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGC 316
|||||||| || |||||||| || |||||||| | ||||||||||||||||||||| ||
Sbjct 216 TGTGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGC 275
Query 317 ATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 376
|||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 276 ATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 335
Query 377 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAA 436
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 336 TGGTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 395
Query 437 GCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479
||||| |||||| ||||||||||| ||||||||||| |||||
Sbjct 396 GCGCGTTGGAGCACTATGGCTTTGATTTCAAAATAAA-GGAAT 437
> Ahg946741 jgi|Araly1|946741|scaffold_702970.1
Length=353
Score = 448 bits (242), Expect = 2e-125
Identities = 298/326 (91%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
||||||||| ||||||||||||||| | |||||||| ||||| || ||||||||||||||
Sbjct 23 AATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTTAGCAAGAACTC 82
Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 83 GTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTGAACCCTACGAT 142
Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
|||||| ||||| ||||| | |||||||| |||||||||||| |||||||||||||||||
Sbjct 143 CTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 202
Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 203 GTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 262
Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
||||||||||||||||||||| ||||| || |||||||||||||| || |||||||| ||
Sbjct 263 AGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAACGTGCTGGAGCATT 322
Query 452 ATGGCTTTGACTTCAAAATAAATGGA 477
|||||||| |||||||||||||||||
Sbjct 323 ATGGCTTTAACTTCAAAATAAATGGA 348
> Ahg946744 jgi|Araly1|946744|scaffold_702973.1
Length=350
Score = 440 bits (238), Expect = 4e-123
Identities = 301/331 (91%), Gaps = 5/331 (2%)
Strand=Plus/Plus
Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 21 AATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATTC 80
Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 140
Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
|||||| | || ||||| | ||||||||| ||| ||||||||||||| |||||||| ||
Sbjct 141 CTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTGG 200
Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 260
Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
||||||||||||||||||||| || || || ||||||||||||| |||| ||| |||||
Sbjct 261 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTTT 320
Query 452 ATGGCTTTGACTTCAA-A--ATAAATGGAAT 479
|||||||||| || || | ||||| |||||
Sbjct 321 ATGGCTTTGA-TTAAATATTATAAA-GGAAT 349
> Ahg493319 jgi|Araly1|493319|fgenesh2_kg.7__2752__AT4G15670.1
Length=580
Score = 433 bits (234), Expect = 7e-121
Identities = 298/329 (91%), Gaps = 4/329 (1%)
Strand=Plus/Plus
Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 57 AATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTC 116
Query 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 117 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGAT 176
Query 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
||||||||| || ||||| | ||| ||||| ||||||||||| ||||||||||| || ||
Sbjct 177 CTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGG 236
Query 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 296
Query 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
||||||||||||||||||||| || || || ||||||||||||| |||||||| |||||
Sbjct 297 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTT 356
Query 452 ATGGCTTTGACTTCAAA-ATAAATGGAAT 479
|||||||||||| ||| ||||| |||||
Sbjct 357 ATGGCTTTGACT--AAATATAAA-GGAAT 382
> Ahg946739 jgi|Araly1|946739|scaffold_702968.1
Length=350
Score = 363 bits (196), Expect = 9e-100
Identities = 274/312 (88%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTT-AGCAAGAACT 210
||||||||| ||||||| |||| ||| ||||||| | || ||||| ||| || ||||| |
Sbjct 21 AATGGAGAAGCTACAAACGATGGTCTACGAGAAGCCTGTGGTGAT-TTTCAGTAAGAATT 79
Query 211 CTTGCTGCATGTCTCACACAATCAAGACTCTCTTC-TTAGACCTTGGCGTGAACCCGACG 269
| ||||||||||||||||||||||||||||||||| || ||| |||| |||||||| |||
Sbjct 80 CGTGCTGCATGTCTCACACAATCAAGACTCTCTTCCTT-GACTTTGGTGTGAACCCAACG 138
Query 270 ATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTC 329
|| ||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||| |||
Sbjct 139 ATTTATGAGCTCGACGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAACTC 198
Query 330 GGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAAT 389
|| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 199 GGCTGCAGCCCGACCGTACCAGTGGTGTTCATAGGAGGGCAGCTCGTAGGTGGAGCCAAT 258
Query 390 CAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCT 449
||||||||||| ||||||||||| || || || || |||||||||||||||| ||||||
Sbjct 259 CAAGTCATGAGCCTCCATCTCAATCGTTCTCTCGTCCCAATGCTTAAGCGCGTTGGAGCG 318
Query 450 TTATGGCTTTGA 461
|||||| |||||
Sbjct 319 TTATGGGTTTGA 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18162060364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5