BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15715.1
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493316 jgi|Araly1|493316|fgenesh2_kg.7__2749__AT4G15715.1 538 2e-152
Ahg946737 jgi|Araly1|946737|scaffold_702966.1 372 2e-102
> Ahg493316 jgi|Araly1|493316|fgenesh2_kg.7__2749__AT4G15715.1
Length=387
Score = 538 bits (291), Expect = 2e-152
Identities = 366/400 (92%), Gaps = 13/400 (3%)
Strand=Plus/Plus
Query 15 GGTTACGATGTTGATTGGAGTAAATGTTGACTACAACTTCCCTGCCGTGAATTTCGATTG 74
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1 GGTTACGATGTTGATTGGAGTAAA-GTTGACTACAACTTCCCTGCCGTCAATTTCGATTG 59
Query 75 GGGAAATGATTTTGATGATCAAATGAACAATAATGAGTTAATGAAACTGCTCATAGAGAC 134
||||| ||||||||||||||| |||| |||| | ||||||||||||| ||||||| ||||
Sbjct 60 GGGAAGTGATTTTGATGATCAGATGAGCAATGAGGAGTTAATGAAACAGCTCATAAAGAC 119
Query 135 TGCCATTGACGAAGAAAACGAAGAAACCGGAACAAGACTTGAGTTTGTCAAGTATGTGAG 194
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 120 TGCCATTGACGAAGAAAACGAAGAAACCGGAACAAAACTTGAGTTCGTCAAGTATGTGAG 179
Query 195 TGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTCTGGGCAAAAGATCT 254
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTTTGGGCAAAAGATCT 239
Query 255 TTCCTCACCAAATCCACAGCCACATTGTTACCAAGCAAAAGTGAGGAAGTTTGCGGCTGA 314
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||
Sbjct 240 TTCCTCACCAAATCCAGAGCCACAATGTTACCAAGCAAAAGTGAGGAAGTTTATGGGTGA 299
Query 315 GATCGACGTTAGTGAGTTTAGGCTAAGGCCAACAAAAGAATGATCAATTGTGAGGTGATA 374
|||||||||||||||||| ||||||||||||||| |||||||| | ||| | |
Sbjct 300 GATCGACGTTAGTGAGTTCAGGCTAAGGCCAACACAAGAATGAG-A-TTG--A--T---- 349
Query 375 ATCACTTCCAATTCTGTGCGCTTCCAGTGAGAAGACTCTT 414
||||||||| ||||||||||| ||||||||||||||||
Sbjct 350 --CACTTCCAACTCTGTGCGCTTGCAGTGAGAAGACTCTT 387
> Ahg946737 jgi|Araly1|946737|scaffold_702966.1
Length=599
Score = 372 bits (201), Expect = 2e-102
Identities = 312/364 (86%), Gaps = 13/364 (4%)
Strand=Plus/Plus
Query 13 AGGGTTACGATGTTGATT-GGAGTAAATGTTGACTACAACTTCCCTGCCGTGA-ATTTCG 70
|||||||||| ||||||| ||| ||||| | |||| ||||||||||||||| | | ||||
Sbjct 236 AGGGTTACGACGTTGATTGGGA-TAAAT-TGGACTTCAACTTCCCTGCCGTCAGA-TTCG 292
Query 71 ATTGGGGA-AATGAT-TTTGATGATC-AAATGAACAATAATGAGTTAATGAAACTGCTCA 127
| |||| | | | | | | | | || | || | |||| ||||||| | || ||||||
Sbjct 293 AATGGGCATCA-GGTCTATCA-GCTCGACAT-ACCAATCTTGAGTTACTCAATCTGCTCC 349
Query 128 TAGAGACTGCCATTGACGAAGAAAACGAAGAAACCGGAACAAGACTTGAGTTTGTCAAGT 187
||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||||
Sbjct 350 TAGAGACAGCCATTGAAGAAGAAAACGAAGAAAATGGAACAAAACTTGAGTTTGTCAAGT 409
Query 188 ATGTGAGTGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTCTGGGCAA 247
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 410 ATGTGAGTGCAAATGTACTTGGCGTCCAAGGTTTTCTGTTTTACATAACATTTTGGGCAA 469
Query 248 AAGATCTTTCCTCACCAAATCCACAGCCACA-TTGTTACCAAGCAAAAGTGAGGAAGTTT 306
| ||||||||||||||| ||||| ||||| | |||| |||||||||| ||| ||||||||
Sbjct 470 AGGATCTTTCCTCACCAGATCCAGAGCCAAAATTGT-ACCAAGCAAAGGTGCGGAAGTTT 528
Query 307 GCGGCTGAGATCGACGTTAGTGAGTTTAGGCTAAGGCCAACAAAAGAATGATCAATTGTG 366
|||| ||||||||| |||||||| || ||| ||||||||||| ||||||||||||| |||
Sbjct 529 GCGGATGAGATCGATGTTAGTGAATTCAGGTTAAGGCCAACACAAGAATGATCAATGGTG 588
Query 367 AGGT 370
||||
Sbjct 589 AGGT 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19421194801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5