BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15733.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value Ahg890708 jgi|Araly1|890708|Al_scaffold_0007_2694 399 4e-111 > Ahg890708 jgi|Araly1|890708|Al_scaffold_0007_2694 Length=261 Score = 399 bits (216), Expect = 4e-111 Identities = 246/261 (94%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 1 ATGAAAGGCATTGCGATGTTATTGGTTTCATGTCTTCTTTTCTCCTTTCTCTCAACCAAC 60 ||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGAAAGCCGTTGCGATTTTATTGGTTTCATGTCTTCTTTTCTCCCTTCTCTCAACCAAC 60 Query 61 CTAGCCAAAGAGTTAAAGTGGTGTCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC 120 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 CTAGCCAAAGAGTTGGAGTGGTGCCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC 120 Query 121 ACAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT 180 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT 180 Query 181 ATGCCTAAGAATTGCAAATGCACTCCTCTTCCTCACAATCGTCGTCAATGTGACTGTTTT 240 |||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||| Sbjct 181 ATGCCTAAGAATTGCAAATGTACTCCTCTTCCTCACAACCATCGTCAATGCGACTGTTTT 240 Query 241 GTCGTTTGTGACAGCAATTAA 261 ||| |||| | |||||||||| Sbjct 241 GTCATTTGCGGCAGCAATTAA 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9088806118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5