BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15733.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890708 jgi|Araly1|890708|Al_scaffold_0007_2694 399 4e-111
> Ahg890708 jgi|Araly1|890708|Al_scaffold_0007_2694
Length=261
Score = 399 bits (216), Expect = 4e-111
Identities = 246/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGGCATTGCGATGTTATTGGTTTCATGTCTTCTTTTCTCCTTTCTCTCAACCAAC 60
||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAAAGCCGTTGCGATTTTATTGGTTTCATGTCTTCTTTTCTCCCTTCTCTCAACCAAC 60
Query 61 CTAGCCAAAGAGTTAAAGTGGTGTCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC 120
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGCCAAAGAGTTGGAGTGGTGCCCATCAAAGGACGTGTTCAATGGATCGTGCACAGAC 120
Query 121 ACAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGGAAGTCCAAGCTACACATGTTTTCTAGATTTGTTGGGATCTAAGAGTGCAAGTGCT 180
Query 181 ATGCCTAAGAATTGCAAATGCACTCCTCTTCCTCACAATCGTCGTCAATGTGACTGTTTT 240
|||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||
Sbjct 181 ATGCCTAAGAATTGCAAATGTACTCCTCTTCCTCACAACCATCGTCAATGCGACTGTTTT 240
Query 241 GTCGTTTGTGACAGCAATTAA 261
||| |||| | ||||||||||
Sbjct 241 GTCATTTGCGGCAGCAATTAA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9088806118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5