BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15735.1

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890707 jgi|Araly1|890707|Al_scaffold_0007_2693                    505    1e-142


> Ahg890707 jgi|Araly1|890707|Al_scaffold_0007_2693
Length=324

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 308/325 (95%), Gaps = 2/325 (1%)
 Strand=Plus/Plus

Query  45   ATGAAGGTTGTGGCAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCCCACCCAC  104
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGGTTGCGGCAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCCCACCCAC  60

Query  105  TTATCACATGAAGAACCAAAGGTTGCACCAACAGAAGAACTAATGTTTGCACCAA-GCAA  163
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct  61   TTATCACATGAAGAACCAACGGTTGCACCAACAGAAGAACTAATGTTTGCACCAATG-AA  119

Query  164  TCAACCAAGGTACTGTCGTTCGAGACAAGTGTTTGATGGATCATGCACAGACAGAGGCAC  223
              |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  120  GGAACCAAAGTACTGTCGTTCGAGACAAGTGTTTGATGGATCATGCACAGACAGAGGCAG  179

Query  224  TCCACGCACGACTTGTTTCCTTGACTTCTTAGGTGCGCGAAGTGCAAGTGAGATGCCTAA  283
            |||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct  180  TCCACGCATGACTTGTTTCCTTGATTTCTTGGGTGCACGAAGTGCAAGTGAGATGCCTAA  239

Query  284  GAACTGCGATTGTACCCCTCAGCCCAATAACAAGCGTCTTTGTGAATGTTCAGTTATTTG  343
            ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GAACTGCAATTGTACTCCTCAGCCCAATAACAAGCGTCTTTGTGAATGTTCAGTTATTTG  299

Query  344  CACCGATTGTTGTGTAAAAAATTAA  368
            ||||||||||||| || | ||||||
Sbjct  300  CACCGATTGTTGTATACATAATTAA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15720102668


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5