BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15740.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493311 jgi|Araly1|493311|fgenesh2_kg.7__2744__AT4G15740.1 2032 0.0
> Ahg493311 jgi|Araly1|493311|fgenesh2_kg.7__2744__AT4G15740.1
Length=1557
Score = 2032 bits (1100), Expect = 0.0
Identities = 1419/1569 (90%), Gaps = 38/1569 (2%)
Strand=Plus/Plus
Query 1 ATGTCCACACATAAATTGTATATAAATATCTT--TGTA--TGGCAATATGCCAAGATAAA 56
|||||||||||||||||||||||||||||||| | || || ||| ||| |||||| |
Sbjct 1 ATGTCCACACATAAATTGTATATAAATATCTTGGTATATTTGAAAAT-TGCGAAGATATA 59
Query 57 ACAAAACAATACTATCTTGAAAATGTCTTCACCACAGTTGCAAAGAGCTATGGAGAATCC 116
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 60 ACAAAACAATACTCTCTTGAAAATGTCTTCACCACAGTTGCAAAGCGCCATGGAGAACCC 119
Query 117 AACTCTTGAGCTCAAAATTGTATCAGCTAGTGACGTCAACCATATCGATGCCACGGACAA 176
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 120 AACTCTTGAGCTCAAAATTGTATCAGCCAGTGAAGTCAACCATATCGATGCCACGGACAA 179
Query 177 AATGGACGTATACGCAGTCGTTTCAATCAACGGCGACACAACACAACAAAAACAAGCGGC 236
||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 180 AATGGACGTATACGCGGTCGTTTCAATCAACGGAGACACAACTCAACAGAAACAAGCGGC 239
Query 237 CAAAACTCCCATTGATTACGATGGTGGTTCTAATCCGACGTGGAATCACACCGTTAAGTT 296
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 240 CAAAACTCCCATTGATTACGACGGTGGTTCCAATCCAACGTGGAATCACACCGTTAAGTT 299
Query 297 CTCCGTCAACGAGAGAGAAGCCAACGAAGGCCTA-TTAACTATAACGGTCAAGCTATTTA 355
|||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 300 CTCCGTCAACGAGACAGAAGCCAACGAAGGCCTACTT-ACTATTACGGTCAAGCTATTTA 358
Query 356 GCTACTGGCTAGAAGGTGATAATGACCTGTATTTGGGAGAAGTCAACGTCTCGGTTCAGG 415
|||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||| |
Sbjct 359 GCTATTGGCTACAAGGTGATAGTGACCTTTATTTGGGAGAAGTCAACATCTCGGTTCAAG 418
Query 416 ATCTTCTTGCCTCAAATCCGATTCCACCGTTTACTAACGGTAACATCAACAAAATGAAGT 475
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 AGCTTCTTGCCTCAAATCCGATTCCACCGTTTACTAACGGTAACGTCAACAAAATGAAGT 478
Query 476 CAATGACTTGCCCTATCAAGGCCACCGAAAAAAGTACCAACACAACGG-TGAGCCTTTCA 534
||||||||||||||||||||||||| ||| |||| |||||| ||| || | |||||||||
Sbjct 479 CAATGACTTGCCCTATCAAGGCCACAGAAGAAAGGACCAACGCAA-GGCTAAGCCTTTCA 537
Query 535 TACCGGTTTAAACCTGTACCGGTTGAGGAATTTTACCCTCCGTCACCGGATTCTTTGCCA 594
|||||||||||||||||||||||||||||| ||| ||||| ||||||||| || ||||
Sbjct 538 TACCGGTTTAAACCTGTACCGGTTGAGGAACCTTATCCTCCATCACCGGATAATTCGCCA 597
Query 595 TCGATTGGTAAACCCGTTTACCGAGACCTGGATCCAGCAAAATTAAGTCAGCCTCTTGTA 654
||||| ||||||||||||||||||||| |||||||| |||||||| |||| ||||| |||
Sbjct 598 TCGATCGGTAAACCCGTTTACCGAGACTTGGATCCAACAAAATTAGGTCAACCTCTCGTA 657
Query 655 TTTTCTCCTCGGTTTCAAGCCACCACGACGAAACTGATCCTAGAGCTCGTGATCAAATTC 714
||||| |||||||||||| |||||||| ||| || ||||||||||||||||||||||||
Sbjct 658 TTTTCCCCTCGGTTTCAATCCACCACGGGGAAGCTTATCCTAGAGCTCGTGATCAAATTC 717
Query 715 GCCAAGAACATCGAAGATGTCAACGCCTTCTCGTCCATGGACGTATACGCTTCGGTTGCG 774
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 GCCAAGAACATCGAAGATGTCAACGCCTTCTCGTCCATGGACGTATACGCCTCGGTTGCG 777
Query 775 ATTCTTAAGGACAGAAAAGTTAAGAATAGGATCAACACACCGGTGGCTTT-TGCCGCTTA 833
|||||||| ||||||||||||||||||||| |||| || || |||||||| | | |||||
Sbjct 778 ATTCTTAAAGACAGAAAAGTTAAGAATAGGGTCAATACCCCTGTGGCTTTCT-CTGCTTA 836
Query 834 TACAAATCCAAAGTGGAATCA-AATGATGAAATTTTCTATTGATGAGAAGTCAGCTCAAG 892
||||| |||| ||||||||| || |||||| |||||| |||||||||||||||||||||
Sbjct 837 CACAAACCCAACGTGGAATCAGAA-GATGAAGTTTTCTCTTGATGAGAAGTCAGCTCAAG 895
Query 893 AAGGGCGGTTGATGCTCCTTGTGGAGTTGATGAGCCACCGGCCTTTCCTTGGTGATAAGG 952
||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||||||
Sbjct 896 AAGGGCGTTTGATGCTTCTCGTGGAATTGATGAGCCACCGGCCTTTTCTTGGTGATAAGG 955
Query 953 AGATTGGATTTGTTAGACTTCCGATGCAACAGTTATTGG-TCTCAAATCCGCCTTATCCG 1011
| ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 956 AAATTGGATTTGTCAGACTTCCGATGCAACAGTTATTGGGT-TCAAATCCGCCTTATCCG 1014
Query 1012 TTGACCGACAATGGTGATGCTAACGGTATGAAGTTGGAGACACATGCTTTGACGGGTCCT 1071
|||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 TTGACCAATAGTGGTGATGCTAACGGTATGAAGTTGGAGACACACGCTTTGACGGGTCCT 1074
Query 1072 TATGGaaaaaaaGGTGTCGTGAGCTTCACGTATAGGTTTCTTGCAGAACAAGTTACA-GC 1130
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1075 TATGGAAAAAAAGGTGTCGTGAGCTTCACGTATAGGTTTCTTGCAGATCAAGTTACAAGC 1134
Query 1131 --A-C-C-ATCTACACCAGGCCAGCCATATATTATGTATGTACCGGTATCGCCTCAGCCA 1185
| | | ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 1135 CCAACACCATCCACACCAGGCCAGCCATATATAATGTATTTACCGGTATCGCCTCAGTCA 1194
Query 1186 TACGCGTCACCTGATCAGCTTCAGGTGACCTCGAGTTACGTGACTGTTCAACCAGGGGCT 1245
|| |||||| | ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TATGCGTCATCGGATAAGATTCAGGTGACCTCGAGTTACGTGACTGTTCAACCAGGGGCT 1254
Query 1246 AATTCTGGGCCAAGCAACGGTCTAGTACCAATATTTATGCCGCCTACATATCAATCACAT 1305
||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1255 AATTCTGGGACAAGCAATGGTCTAGTACCAATATATATGCCGCCTACTTATCAATCACAT 1314
Query 1306 GGATACCAACAATATTCACCAAGGAAGTC-GAAATCGCAACTACAACCGTCACCACGACA 1364
||||||||||||||||||||| |||| || |||| ||| || || || |||||| |||
Sbjct 1315 GGATACCAACAATATTCACCACGGAA-TCCGAAACCGCGACCGCAGTCGCCACCACAACA 1373
Query 1365 GTTGCAGCTTCAACCCCTGCGTCTGCAGCCGCTCTCGCAGTAAATACCGGATACACA--- 1421
|| |||||||||||| ||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1374 GTAGCAGCTTCAACCGCTGCGTCTGCATCCGCTCCCGCAGTAATTACCGGATACACAGTC 1433
Query 1422 A-T----CACATGGATACCAACAGGCAATTACAATCCTTAGCATAATGTGTCGCACCCGt 1476
| | |||||||| |||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1434 ACTGAGTCACATGGACACCAACAGGCAA--A-AATCCTTAGCATGATGTGTCGCACCCGT 1490
Query 1477 tttttatttatatg-acttggcttatca-tttcattttattttgttccttgtttttaatt 1534
||| |||||||||| | |||| || | |||| |||||||||||||||| |||||||||
Sbjct 1491 TTTATATTTATATGTA-TTGGGAAAT-AGTTTCTTTTTATTTTGTTCCTTTTTTTTAATT 1548
Query 1535 aGCTTGAAA 1543
|| ||||||
Sbjct 1549 AGTTTGAAA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5