BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15750.1

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355195 jgi|Araly1|355195|fgenesh1_pg.C_scaffold_7002368           473    6e-133


> Ahg355195 jgi|Araly1|355195|fgenesh1_pg.C_scaffold_7002368
Length=519

 Score =  473 bits (256),  Expect = 6e-133
 Identities = 442/527 (84%), Gaps = 31/527 (6%)
 Strand=Plus/Plus

Query  57   ATGACTAATCCCATGATCATGGTTATGCTGTTGTTGTTTCTTGTGATGTCGACTAGAGCA  116
            ||||||||||||||||||| ||||||||| ||||||||||||||| |||||| | |||||
Sbjct  1    ATGACTAATCCCATGATCAAGGTTATGCTATTGTTGTTTCTTGTGTTGTCGATTCGAGCA  60

Query  117  GACGAAGAGCTGATTAAGACAGAGTGTAATCACACA-GAATACCAAAACGTATGCCTCTT  175
            |||||||||||||| |||| |||||||| ||| ||| | | |||||||| ||||||||||
Sbjct  61   GACGAAGAGCTGATGAAGAAAGAGTGTAGTCAGACAGGGA-ACCAAAACTTATGCCTCTT  119

Query  176  CTGTCTTGAAGCCGATCCAATCTCCT-TCAATATCGACCGTGCTGGACTT-GTCAACATC  233
             ||||||||| | || ||||||||||  ||| | ||||||||||||| || |||| ||||
Sbjct  120  TTGTCTTGAATCTGACCCAATCTCCTACCAA-ACCGACCGTGCTGGA-TTCGTCAGCATC  177

Query  234  ATTATACACTGTCTCGGATCTCAACTTGATGTTCTTATCAAC-ACCGTCACGAGTCTAAA  292
            | |||||||||||||| ||||||||||||| |||| |||||| | ||||||||||||   
Sbjct  178  ACTATACACTGTCTCGAATCTCAACTTGATATTCTCATCAACGA-CGTCACGAGTCT---  233

Query  293  GTTGATGAAAGGAGAGGGTGAAGCAAA-TGAGAATGTTCTGAAAGATTGCGTCACAGGCT  351
            || |||||||||||||||||||| ||| ||||||||||||| ||||||||  |  |  ||
Sbjct  234  GTCGATGAAAGGAGAGGGTGAAG-AAATTGAGAATGTTCTGGAAGATTGCAACGTAAACT  292

Query  352  TTGCGATTGCACAATTACGA-CTTCAAG-G-AGCC-AACATCGATTTGATAACCCTTAAT  407
            || |||||||| |||||| | |||  || | |||| || | | | ||| |||||||||||
Sbjct  293  TTTCGATTGCAAAATTAC-ACCTT--AGCGAAGCCAAAGA-CAAGTTGGTAACCCTTAAT  348

Query  408  TACGATAAAGCGTACGAATTGGTGAAAACTGC-GTTAAACTATCCTCGGACTTGCGA-AG  465
             |||| ||||| | || ||||||||||||| | ||| | ||||| || ||||||| | ||
Sbjct  349  AACGAGAAAGCCTTCGGATTGGTGAAAACTTCGGTT-AGCTATCTTCAGACTTGC-AGAG  406

Query  466  AAAATCTCCAAAAACTCAAGTTCAAAGATTCATC-TGATGTTTATGACGATATC-TTGGC  523
             ||||||||||||| |||||||||| || ||| | |||||||||||||||||||  || |
Sbjct  407  GAAATCTCCAAAAAATCAAGTTCAACGAGTCA-CATGATGTTTATGACGATATCGATGTC  465

Query  524  ATATAG-CCAACTCACCTCTGTTGCTAAGACGTTGATCCACCGTCTC  569
             ||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct  466  -TAT-GTCGACCTCTCCTCTGTTGCTAAGACGTTGATCCACCGTCTC  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26533550232


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5